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PMC:7039714 / 1387-2753 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
51 573-591 Gene denotes C-reactive protein Gene:1401
52 145-151 Species denotes People Tax:9606
53 168-175 Species denotes patient Tax:9606
54 610-617 Species denotes patient Tax:9606
55 685-712 Species denotes respiratory syncytial virus Tax:12814
56 714-724 Species denotes adenovirus Tax:10508
57 726-743 Species denotes influenza A virus Tax:11320
58 745-766 Species denotes Mycoplasma pneumoniae Tax:2104
59 768-788 Species denotes Chlamydia pneumoniae Tax:83558
60 839-856 Species denotes influenza B virus Tax:11520
61 946-955 Species denotes 2019-nCoV Tax:2697049
62 651-662 Species denotes respiratory Tax:12814
63 866-875 Species denotes influenza Tax:11520
64 538-545 Chemical denotes glucose MESH:D005947
65 40-45 Disease denotes fever MESH:D005334
66 61-66 Disease denotes cough MESH:D003371
67 344-349 Disease denotes fever MESH:D005334
70 1319-1335 Disease denotes pleural effusion MESH:D010996
71 1340-1355 Disease denotes lymphadenopathy MESH:D008206

LitCovid_Glycan-Motif-Structure

Id Subject Object Predicate Lexical cue
T1 538-545 https://glytoucan.org/Structures/Glycans/G15021LG denotes glucose
T2 876-885 https://glytoucan.org/Structures/Glycans/G71832QJ denotes A antigen

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T6 358-362 Body_part denotes body http://purl.org/sig/ont/fma/fma256135
T7 440-449 Body_part denotes leukocyte http://purl.org/sig/ont/fma/fma62852
T8 477-488 Body_part denotes neutrophils http://purl.org/sig/ont/fma/fma62860
T9 508-519 Body_part denotes lymphocytes http://purl.org/sig/ont/fma/fma62863
T10 538-545 Body_part denotes glucose http://purl.org/sig/ont/fma/fma82743
T11 584-591 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T12 1064-1067 Body_part denotes DNA http://purl.org/sig/ont/fma/fma74412
T13 1075-1081 Body_part denotes sputum http://purl.org/sig/ont/fma/fma312401
T14 1199-1204 Body_part denotes lungs http://purl.org/sig/ont/fma/fma68877
T15 1288-1292 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T4 1075-1081 Body_part denotes sputum http://purl.obolibrary.org/obo/UBERON_0007311
T5 1288-1292 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T6 1319-1335 Body_part denotes pleural effusion http://purl.obolibrary.org/obo/UBERON_0000175

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T7 726-735 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T8 745-766 Disease denotes Mycoplasma pneumoniae http://purl.obolibrary.org/obo/MONDO_0005867
T9 768-788 Disease denotes Chlamydia pneumoniae http://purl.obolibrary.org/obo/MONDO_0025598
T10 790-800 Disease denotes Legionella http://purl.obolibrary.org/obo/MONDO_0005824
T11 839-848 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T12 866-875 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T13 924-926 Disease denotes he http://purl.obolibrary.org/obo/MONDO_0017319
T14 1340-1355 Disease denotes lymphadenopathy http://purl.obolibrary.org/obo/MONDO_0005833

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T14 7-8 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T15 9-11 http://purl.obolibrary.org/obo/CLO_0001000 denotes 35
T16 180-181 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T17 356-357 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T18 431-432 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T19 618-624 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T20 707-712 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T21 736-737 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T22 738-743 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T23 828-833 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T24 849-850 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T25 851-856 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T26 876-877 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T27 1073-1074 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T28 1199-1204 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lungs
T29 1288-1292 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T30 1288-1292 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T31 1319-1335 http://purl.obolibrary.org/obo/UBERON_0000175 denotes pleural effusion

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 538-545 Chemical denotes glucose http://purl.obolibrary.org/obo/CHEBI_17234|http://purl.obolibrary.org/obo/CHEBI_4167
T3 584-591 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T4 876-885 Chemical denotes A antigen http://purl.obolibrary.org/obo/CHEBI_139352
T5 878-885 Chemical denotes antigen http://purl.obolibrary.org/obo/CHEBI_59132
T6 1064-1067 Chemical denotes DNA http://purl.obolibrary.org/obo/CHEBI_16991

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 987-1000 http://purl.obolibrary.org/obo/GO_0003968 denotes transcriptase
T2 987-1000 http://purl.obolibrary.org/obo/GO_0003899 denotes transcriptase

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T15 0-6 Sentence denotes Case 1
T16 7-163 Sentence denotes A 35-year-old man presented with fever for 3 days and cough for 2 days and was admitted to the emergency department of Jiangxi Provincial People's Hospital.
T17 164-315 Sentence denotes The patient had a history of good physical health with no underlying diseases but had returned to Nanchang, Jiangxi Province, from Wuhan 1 week before.
T18 316-605 Sentence denotes Physical examination showed fever, with a body temperature of 38.7℃, and the laboratory examination results showed a normal leukocyte count (5520/µL), increased neutrophils (76.2%), decreased lymphocytes (16.1%), elevated glucose (7.4 mmol/L), and elevated C-reactive protein (14.00 mg/L).
T19 606-914 Sentence denotes The patient tested negative for eight common respiratory pathogens, which were respiratory syncytial virus, adenovirus, influenza A virus, Mycoplasma pneumoniae, Chlamydia pneumoniae, Legionella pneumophila, parainfluenza virus, and influenza B virus, and the influenza A antigen screening was also negative.
T20 915-1089 Sentence denotes Finally, he was diagnosed with 2019-nCoV based on the real-time reverse-transcriptase-polymerase chain reaction (rRT-PCR) amplification of the viral DNA from a sputum sample.
T21 1090-1205 Sentence denotes CT showed multiple regions of patchy consolidation and ground-glass opacities with indistinct border in both lungs.
T22 1206-1310 Sentence denotes The lesions were distributed along the bronchial bundles or within the subpleural lung regions (Fig. 1).
T23 1311-1366 Sentence denotes Neither pleural effusion nor lymphadenopathy was found.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T5 40-45 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T6 61-66 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T7 344-349 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T8 756-766 Phenotype denotes pneumoniae http://purl.obolibrary.org/obo/HP_0002090
T9 778-788 Phenotype denotes pneumoniae http://purl.obolibrary.org/obo/HP_0002090
T10 1319-1335 Phenotype denotes pleural effusion http://purl.obolibrary.org/obo/HP_0002202
T11 1340-1355 Phenotype denotes lymphadenopathy http://purl.obolibrary.org/obo/HP_0002716