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PMC:7039714 / 1374-3785 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
51 586-604 Gene denotes C-reactive protein Gene:1401
52 158-164 Species denotes People Tax:9606
53 181-188 Species denotes patient Tax:9606
54 623-630 Species denotes patient Tax:9606
55 698-725 Species denotes respiratory syncytial virus Tax:12814
56 727-737 Species denotes adenovirus Tax:10508
57 739-756 Species denotes influenza A virus Tax:11320
58 758-779 Species denotes Mycoplasma pneumoniae Tax:2104
59 781-801 Species denotes Chlamydia pneumoniae Tax:83558
60 852-869 Species denotes influenza B virus Tax:11520
61 959-968 Species denotes 2019-nCoV Tax:2697049
62 664-675 Species denotes respiratory Tax:12814
63 879-888 Species denotes influenza Tax:11520
64 551-558 Chemical denotes glucose MESH:D005947
65 53-58 Disease denotes fever MESH:D005334
66 74-79 Disease denotes cough MESH:D003371
67 357-362 Disease denotes fever MESH:D005334
70 1332-1348 Disease denotes pleural effusion MESH:D010996
71 1353-1368 Disease denotes lymphadenopathy MESH:D008206
81 2010-2013 Gene denotes CRP Gene:1401
82 1496-1502 Species denotes People Tax:9606
83 1610-1617 Species denotes patient Tax:9606
84 1687-1694 Species denotes patient Tax:9606
85 2058-2067 Species denotes 2019-nCoV Tax:2697049
86 1977-1984 Chemical denotes glucose MESH:D005947
87 1422-1427 Disease denotes fever MESH:D005334
88 1514-1519 Disease denotes fever MESH:D005334
89 1744-1749 Disease denotes fever MESH:D005334
93 2191-2201 Disease denotes lung lobes MESH:D008171
94 2364-2380 Disease denotes pleural effusion MESH:D010996
95 2385-2400 Disease denotes lymphadenopathy MESH:D008206

LitCovid_Glycan-Motif-Structure

Id Subject Object Predicate Lexical cue
T1 551-558 https://glytoucan.org/Structures/Glycans/G15021LG denotes glucose
T2 889-898 https://glytoucan.org/Structures/Glycans/G71832QJ denotes A antigen
T3 1977-1984 https://glytoucan.org/Structures/Glycans/G15021LG denotes glucose

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T6 371-375 Body_part denotes body http://purl.org/sig/ont/fma/fma256135
T7 453-462 Body_part denotes leukocyte http://purl.org/sig/ont/fma/fma62852
T8 490-501 Body_part denotes neutrophils http://purl.org/sig/ont/fma/fma62860
T9 521-532 Body_part denotes lymphocytes http://purl.org/sig/ont/fma/fma62863
T10 551-558 Body_part denotes glucose http://purl.org/sig/ont/fma/fma82743
T11 597-604 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T12 1077-1080 Body_part denotes DNA http://purl.org/sig/ont/fma/fma74412
T13 1088-1094 Body_part denotes sputum http://purl.org/sig/ont/fma/fma312401
T14 1212-1217 Body_part denotes lungs http://purl.org/sig/ont/fma/fma68877
T15 1301-1305 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T16 1432-1438 Body_part denotes throat http://purl.org/sig/ont/fma/fma228738
T17 1837-1846 Body_part denotes leukocyte http://purl.org/sig/ont/fma/fma62852
T18 1871-1882 Body_part denotes neutrophils http://purl.org/sig/ont/fma/fma62860
T19 1899-1910 Body_part denotes lymphocytes http://purl.org/sig/ont/fma/fma62863
T20 1977-1984 Body_part denotes glucose http://purl.org/sig/ont/fma/fma82743
T21 2103-2109 Body_part denotes sputum http://purl.org/sig/ont/fma/fma312401
T22 2191-2195 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T23 2221-2236 Body_part denotes left lower lobe http://purl.org/sig/ont/fma/fma7371
T24 2295-2311 Body_part denotes right lower lobe http://purl.org/sig/ont/fma/fma7337

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T4 1088-1094 Body_part denotes sputum http://purl.obolibrary.org/obo/UBERON_0007311
T5 1301-1305 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T6 1332-1348 Body_part denotes pleural effusion http://purl.obolibrary.org/obo/UBERON_0000175
T7 1432-1438 Body_part denotes throat http://purl.obolibrary.org/obo/UBERON_0000341
T8 2103-2109 Body_part denotes sputum http://purl.obolibrary.org/obo/UBERON_0007311
T9 2191-2195 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T10 2232-2236 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T11 2307-2311 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T12 2364-2380 Body_part denotes pleural effusion http://purl.obolibrary.org/obo/UBERON_0000175

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T7 739-748 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T8 758-779 Disease denotes Mycoplasma pneumoniae http://purl.obolibrary.org/obo/MONDO_0005867
T9 781-801 Disease denotes Chlamydia pneumoniae http://purl.obolibrary.org/obo/MONDO_0025598
T10 803-813 Disease denotes Legionella http://purl.obolibrary.org/obo/MONDO_0005824
T11 852-861 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T12 879-888 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T13 937-939 Disease denotes he http://purl.obolibrary.org/obo/MONDO_0017319
T14 1353-1368 Disease denotes lymphadenopathy http://purl.obolibrary.org/obo/MONDO_0005833
T15 1505-1519 Disease denotes Hospital fever http://purl.obolibrary.org/obo/MONDO_0001246
T16 1650-1652 Disease denotes he http://purl.obolibrary.org/obo/MONDO_0017319
T17 2036-2038 Disease denotes he http://purl.obolibrary.org/obo/MONDO_0017319
T18 2385-2400 Disease denotes lymphadenopathy http://purl.obolibrary.org/obo/MONDO_0005833

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T14 20-21 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T15 22-24 http://purl.obolibrary.org/obo/CLO_0001000 denotes 35
T16 193-194 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T17 369-370 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T18 444-445 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T19 631-637 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T20 720-725 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T21 749-750 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T22 751-756 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T23 841-846 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T24 862-863 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T25 864-869 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T26 889-890 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T27 1086-1087 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T28 1212-1217 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lungs
T29 1301-1305 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T30 1301-1305 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T31 1332-1348 http://purl.obolibrary.org/obo/UBERON_0000175 denotes pleural effusion
T32 1388-1389 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T33 1535-1536 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T34 1657-1658 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T35 1756-1757 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T36 1828-1829 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T37 2101-2102 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T38 2191-2195 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T39 2191-2195 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T40 2364-2380 http://purl.obolibrary.org/obo/UBERON_0000175 denotes pleural effusion

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 551-558 Chemical denotes glucose http://purl.obolibrary.org/obo/CHEBI_17234|http://purl.obolibrary.org/obo/CHEBI_4167
T3 597-604 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T4 889-898 Chemical denotes A antigen http://purl.obolibrary.org/obo/CHEBI_139352
T5 891-898 Chemical denotes antigen http://purl.obolibrary.org/obo/CHEBI_59132
T6 1077-1080 Chemical denotes DNA http://purl.obolibrary.org/obo/CHEBI_16991
T7 1930-1939 Chemical denotes aspartate http://purl.obolibrary.org/obo/CHEBI_132943|http://purl.obolibrary.org/obo/CHEBI_29995|http://purl.obolibrary.org/obo/CHEBI_72314
T10 1977-1984 Chemical denotes glucose http://purl.obolibrary.org/obo/CHEBI_17234|http://purl.obolibrary.org/obo/CHEBI_4167

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 1000-1013 http://purl.obolibrary.org/obo/GO_0003968 denotes transcriptase
T2 1000-1013 http://purl.obolibrary.org/obo/GO_0003899 denotes transcriptase

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T14 0-11 Sentence denotes CASE REPORT
T15 13-19 Sentence denotes Case 1
T16 20-176 Sentence denotes A 35-year-old man presented with fever for 3 days and cough for 2 days and was admitted to the emergency department of Jiangxi Provincial People's Hospital.
T17 177-328 Sentence denotes The patient had a history of good physical health with no underlying diseases but had returned to Nanchang, Jiangxi Province, from Wuhan 1 week before.
T18 329-618 Sentence denotes Physical examination showed fever, with a body temperature of 38.7℃, and the laboratory examination results showed a normal leukocyte count (5520/µL), increased neutrophils (76.2%), decreased lymphocytes (16.1%), elevated glucose (7.4 mmol/L), and elevated C-reactive protein (14.00 mg/L).
T19 619-927 Sentence denotes The patient tested negative for eight common respiratory pathogens, which were respiratory syncytial virus, adenovirus, influenza A virus, Mycoplasma pneumoniae, Chlamydia pneumoniae, Legionella pneumophila, parainfluenza virus, and influenza B virus, and the influenza A antigen screening was also negative.
T20 928-1102 Sentence denotes Finally, he was diagnosed with 2019-nCoV based on the real-time reverse-transcriptase-polymerase chain reaction (rRT-PCR) amplification of the viral DNA from a sputum sample.
T21 1103-1218 Sentence denotes CT showed multiple regions of patchy consolidation and ground-glass opacities with indistinct border in both lungs.
T22 1219-1323 Sentence denotes The lesions were distributed along the bronchial bundles or within the subpleural lung regions (Fig. 1).
T23 1324-1379 Sentence denotes Neither pleural effusion nor lymphadenopathy was found.
T24 1381-1387 Sentence denotes Case 2
T25 1388-1527 Sentence denotes A 39-year-old man presenting with fever and throat discomfort for 2 days was admitted to Jiangxi Provincial People's Hospital fever clinic.
T26 1528-1596 Sentence denotes He had a history of good physical health and no underlying diseases.
T27 1597-1715 Sentence denotes Although the patient had not visited Wuhan recently, he had a history of contact with the patient described in Case 1.
T28 1716-2026 Sentence denotes Physical examination showed fever, with a temperature of 39.3℃, and laboratory examination results demonstrated a normal leukocyte count (5320/µL), normal neutrophils (67.6%), normal lymphocytes (24.5%), decreased aspartate aminotransferase (14 IU/L), elevated glucose (6.8 mmol/L), and normal CRP (4.00 mg/L).
T29 2027-2117 Sentence denotes Finally, he was diagnosed with 2019-nCoV based on the rRT-PCR analysis of a sputum sample.
T30 2118-2202 Sentence denotes CT imaging showed small ill-defined ground-glass opacities in both lower lung lobes.
T31 2203-2355 Sentence denotes The lesion in the left lower lobe was located in the subpleural region while the one in the right lower lobe was distributed along the bundles (Fig. 2).
T32 2356-2411 Sentence denotes Neither pleural effusion nor lymphadenopathy was found.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T5 53-58 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T6 74-79 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T7 357-362 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T8 769-779 Phenotype denotes pneumoniae http://purl.obolibrary.org/obo/HP_0002090
T9 791-801 Phenotype denotes pneumoniae http://purl.obolibrary.org/obo/HP_0002090
T10 1332-1348 Phenotype denotes pleural effusion http://purl.obolibrary.org/obo/HP_0002202
T11 1353-1368 Phenotype denotes lymphadenopathy http://purl.obolibrary.org/obo/HP_0002716
T12 1422-1427 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T13 1514-1519 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T14 1744-1749 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T15 2364-2380 Phenotype denotes pleural effusion http://purl.obolibrary.org/obo/HP_0002202
T16 2385-2400 Phenotype denotes lymphadenopathy http://purl.obolibrary.org/obo/HP_0002716