
PMC:7039714 / 1374-3785
Annnotations
LitCovid-PubTator
Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
---|---|---|---|---|---|
51 | 586-604 | Gene | denotes | C-reactive protein | Gene:1401 |
52 | 158-164 | Species | denotes | People | Tax:9606 |
53 | 181-188 | Species | denotes | patient | Tax:9606 |
54 | 623-630 | Species | denotes | patient | Tax:9606 |
55 | 698-725 | Species | denotes | respiratory syncytial virus | Tax:12814 |
56 | 727-737 | Species | denotes | adenovirus | Tax:10508 |
57 | 739-756 | Species | denotes | influenza A virus | Tax:11320 |
58 | 758-779 | Species | denotes | Mycoplasma pneumoniae | Tax:2104 |
59 | 781-801 | Species | denotes | Chlamydia pneumoniae | Tax:83558 |
60 | 852-869 | Species | denotes | influenza B virus | Tax:11520 |
61 | 959-968 | Species | denotes | 2019-nCoV | Tax:2697049 |
62 | 664-675 | Species | denotes | respiratory | Tax:12814 |
63 | 879-888 | Species | denotes | influenza | Tax:11520 |
64 | 551-558 | Chemical | denotes | glucose | MESH:D005947 |
65 | 53-58 | Disease | denotes | fever | MESH:D005334 |
66 | 74-79 | Disease | denotes | cough | MESH:D003371 |
67 | 357-362 | Disease | denotes | fever | MESH:D005334 |
70 | 1332-1348 | Disease | denotes | pleural effusion | MESH:D010996 |
71 | 1353-1368 | Disease | denotes | lymphadenopathy | MESH:D008206 |
81 | 2010-2013 | Gene | denotes | CRP | Gene:1401 |
82 | 1496-1502 | Species | denotes | People | Tax:9606 |
83 | 1610-1617 | Species | denotes | patient | Tax:9606 |
84 | 1687-1694 | Species | denotes | patient | Tax:9606 |
85 | 2058-2067 | Species | denotes | 2019-nCoV | Tax:2697049 |
86 | 1977-1984 | Chemical | denotes | glucose | MESH:D005947 |
87 | 1422-1427 | Disease | denotes | fever | MESH:D005334 |
88 | 1514-1519 | Disease | denotes | fever | MESH:D005334 |
89 | 1744-1749 | Disease | denotes | fever | MESH:D005334 |
93 | 2191-2201 | Disease | denotes | lung lobes | MESH:D008171 |
94 | 2364-2380 | Disease | denotes | pleural effusion | MESH:D010996 |
95 | 2385-2400 | Disease | denotes | lymphadenopathy | MESH:D008206 |
LitCovid_Glycan-Motif-Structure
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1 | 551-558 | https://glytoucan.org/Structures/Glycans/G15021LG | denotes | glucose |
T2 | 889-898 | https://glytoucan.org/Structures/Glycans/G71832QJ | denotes | A antigen |
T3 | 1977-1984 | https://glytoucan.org/Structures/Glycans/G15021LG | denotes | glucose |
LitCovid-PD-FMA-UBERON
Id | Subject | Object | Predicate | Lexical cue | fma_id |
---|---|---|---|---|---|
T6 | 371-375 | Body_part | denotes | body | http://purl.org/sig/ont/fma/fma256135 |
T7 | 453-462 | Body_part | denotes | leukocyte | http://purl.org/sig/ont/fma/fma62852 |
T8 | 490-501 | Body_part | denotes | neutrophils | http://purl.org/sig/ont/fma/fma62860 |
T9 | 521-532 | Body_part | denotes | lymphocytes | http://purl.org/sig/ont/fma/fma62863 |
T10 | 551-558 | Body_part | denotes | glucose | http://purl.org/sig/ont/fma/fma82743 |
T11 | 597-604 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
T12 | 1077-1080 | Body_part | denotes | DNA | http://purl.org/sig/ont/fma/fma74412 |
T13 | 1088-1094 | Body_part | denotes | sputum | http://purl.org/sig/ont/fma/fma312401 |
T14 | 1212-1217 | Body_part | denotes | lungs | http://purl.org/sig/ont/fma/fma68877 |
T15 | 1301-1305 | Body_part | denotes | lung | http://purl.org/sig/ont/fma/fma7195 |
T16 | 1432-1438 | Body_part | denotes | throat | http://purl.org/sig/ont/fma/fma228738 |
T17 | 1837-1846 | Body_part | denotes | leukocyte | http://purl.org/sig/ont/fma/fma62852 |
T18 | 1871-1882 | Body_part | denotes | neutrophils | http://purl.org/sig/ont/fma/fma62860 |
T19 | 1899-1910 | Body_part | denotes | lymphocytes | http://purl.org/sig/ont/fma/fma62863 |
T20 | 1977-1984 | Body_part | denotes | glucose | http://purl.org/sig/ont/fma/fma82743 |
T21 | 2103-2109 | Body_part | denotes | sputum | http://purl.org/sig/ont/fma/fma312401 |
T22 | 2191-2195 | Body_part | denotes | lung | http://purl.org/sig/ont/fma/fma7195 |
T23 | 2221-2236 | Body_part | denotes | left lower lobe | http://purl.org/sig/ont/fma/fma7371 |
T24 | 2295-2311 | Body_part | denotes | right lower lobe | http://purl.org/sig/ont/fma/fma7337 |
LitCovid-PD-UBERON
Id | Subject | Object | Predicate | Lexical cue | uberon_id |
---|---|---|---|---|---|
T4 | 1088-1094 | Body_part | denotes | sputum | http://purl.obolibrary.org/obo/UBERON_0007311 |
T5 | 1301-1305 | Body_part | denotes | lung | http://purl.obolibrary.org/obo/UBERON_0002048 |
T6 | 1332-1348 | Body_part | denotes | pleural effusion | http://purl.obolibrary.org/obo/UBERON_0000175 |
T7 | 1432-1438 | Body_part | denotes | throat | http://purl.obolibrary.org/obo/UBERON_0000341 |
T8 | 2103-2109 | Body_part | denotes | sputum | http://purl.obolibrary.org/obo/UBERON_0007311 |
T9 | 2191-2195 | Body_part | denotes | lung | http://purl.obolibrary.org/obo/UBERON_0002048 |
T10 | 2232-2236 | Body_part | denotes | lobe | http://purl.obolibrary.org/obo/UBERON_3010752 |
T11 | 2307-2311 | Body_part | denotes | lobe | http://purl.obolibrary.org/obo/UBERON_3010752 |
T12 | 2364-2380 | Body_part | denotes | pleural effusion | http://purl.obolibrary.org/obo/UBERON_0000175 |
LitCovid-PD-MONDO
Id | Subject | Object | Predicate | Lexical cue | mondo_id |
---|---|---|---|---|---|
T7 | 739-748 | Disease | denotes | influenza | http://purl.obolibrary.org/obo/MONDO_0005812 |
T8 | 758-779 | Disease | denotes | Mycoplasma pneumoniae | http://purl.obolibrary.org/obo/MONDO_0005867 |
T9 | 781-801 | Disease | denotes | Chlamydia pneumoniae | http://purl.obolibrary.org/obo/MONDO_0025598 |
T10 | 803-813 | Disease | denotes | Legionella | http://purl.obolibrary.org/obo/MONDO_0005824 |
T11 | 852-861 | Disease | denotes | influenza | http://purl.obolibrary.org/obo/MONDO_0005812 |
T12 | 879-888 | Disease | denotes | influenza | http://purl.obolibrary.org/obo/MONDO_0005812 |
T13 | 937-939 | Disease | denotes | he | http://purl.obolibrary.org/obo/MONDO_0017319 |
T14 | 1353-1368 | Disease | denotes | lymphadenopathy | http://purl.obolibrary.org/obo/MONDO_0005833 |
T15 | 1505-1519 | Disease | denotes | Hospital fever | http://purl.obolibrary.org/obo/MONDO_0001246 |
T16 | 1650-1652 | Disease | denotes | he | http://purl.obolibrary.org/obo/MONDO_0017319 |
T17 | 2036-2038 | Disease | denotes | he | http://purl.obolibrary.org/obo/MONDO_0017319 |
T18 | 2385-2400 | Disease | denotes | lymphadenopathy | http://purl.obolibrary.org/obo/MONDO_0005833 |
LitCovid-PD-CLO
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T14 | 20-21 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
T15 | 22-24 | http://purl.obolibrary.org/obo/CLO_0001000 | denotes | 35 |
T16 | 193-194 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T17 | 369-370 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T18 | 444-445 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T19 | 631-637 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | tested |
T20 | 720-725 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
T21 | 749-750 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
T22 | 751-756 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
T23 | 841-846 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
T24 | 862-863 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | B |
T25 | 864-869 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
T26 | 889-890 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
T27 | 1086-1087 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T28 | 1212-1217 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lungs |
T29 | 1301-1305 | http://purl.obolibrary.org/obo/UBERON_0002048 | denotes | lung |
T30 | 1301-1305 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lung |
T31 | 1332-1348 | http://purl.obolibrary.org/obo/UBERON_0000175 | denotes | pleural effusion |
T32 | 1388-1389 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
T33 | 1535-1536 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T34 | 1657-1658 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T35 | 1756-1757 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T36 | 1828-1829 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T37 | 2101-2102 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T38 | 2191-2195 | http://purl.obolibrary.org/obo/UBERON_0002048 | denotes | lung |
T39 | 2191-2195 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lung |
T40 | 2364-2380 | http://purl.obolibrary.org/obo/UBERON_0000175 | denotes | pleural effusion |
LitCovid-PD-CHEBI
Id | Subject | Object | Predicate | Lexical cue | chebi_id |
---|---|---|---|---|---|
T1 | 551-558 | Chemical | denotes | glucose | http://purl.obolibrary.org/obo/CHEBI_17234|http://purl.obolibrary.org/obo/CHEBI_4167 |
T3 | 597-604 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
T4 | 889-898 | Chemical | denotes | A antigen | http://purl.obolibrary.org/obo/CHEBI_139352 |
T5 | 891-898 | Chemical | denotes | antigen | http://purl.obolibrary.org/obo/CHEBI_59132 |
T6 | 1077-1080 | Chemical | denotes | DNA | http://purl.obolibrary.org/obo/CHEBI_16991 |
T7 | 1930-1939 | Chemical | denotes | aspartate | http://purl.obolibrary.org/obo/CHEBI_132943|http://purl.obolibrary.org/obo/CHEBI_29995|http://purl.obolibrary.org/obo/CHEBI_72314 |
T10 | 1977-1984 | Chemical | denotes | glucose | http://purl.obolibrary.org/obo/CHEBI_17234|http://purl.obolibrary.org/obo/CHEBI_4167 |
LitCovid-PD-GO-BP
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1 | 1000-1013 | http://purl.obolibrary.org/obo/GO_0003968 | denotes | transcriptase |
T2 | 1000-1013 | http://purl.obolibrary.org/obo/GO_0003899 | denotes | transcriptase |
LitCovid-sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T14 | 0-11 | Sentence | denotes | CASE REPORT |
T15 | 13-19 | Sentence | denotes | Case 1 |
T16 | 20-176 | Sentence | denotes | A 35-year-old man presented with fever for 3 days and cough for 2 days and was admitted to the emergency department of Jiangxi Provincial People's Hospital. |
T17 | 177-328 | Sentence | denotes | The patient had a history of good physical health with no underlying diseases but had returned to Nanchang, Jiangxi Province, from Wuhan 1 week before. |
T18 | 329-618 | Sentence | denotes | Physical examination showed fever, with a body temperature of 38.7℃, and the laboratory examination results showed a normal leukocyte count (5520/µL), increased neutrophils (76.2%), decreased lymphocytes (16.1%), elevated glucose (7.4 mmol/L), and elevated C-reactive protein (14.00 mg/L). |
T19 | 619-927 | Sentence | denotes | The patient tested negative for eight common respiratory pathogens, which were respiratory syncytial virus, adenovirus, influenza A virus, Mycoplasma pneumoniae, Chlamydia pneumoniae, Legionella pneumophila, parainfluenza virus, and influenza B virus, and the influenza A antigen screening was also negative. |
T20 | 928-1102 | Sentence | denotes | Finally, he was diagnosed with 2019-nCoV based on the real-time reverse-transcriptase-polymerase chain reaction (rRT-PCR) amplification of the viral DNA from a sputum sample. |
T21 | 1103-1218 | Sentence | denotes | CT showed multiple regions of patchy consolidation and ground-glass opacities with indistinct border in both lungs. |
T22 | 1219-1323 | Sentence | denotes | The lesions were distributed along the bronchial bundles or within the subpleural lung regions (Fig. 1). |
T23 | 1324-1379 | Sentence | denotes | Neither pleural effusion nor lymphadenopathy was found. |
T24 | 1381-1387 | Sentence | denotes | Case 2 |
T25 | 1388-1527 | Sentence | denotes | A 39-year-old man presenting with fever and throat discomfort for 2 days was admitted to Jiangxi Provincial People's Hospital fever clinic. |
T26 | 1528-1596 | Sentence | denotes | He had a history of good physical health and no underlying diseases. |
T27 | 1597-1715 | Sentence | denotes | Although the patient had not visited Wuhan recently, he had a history of contact with the patient described in Case 1. |
T28 | 1716-2026 | Sentence | denotes | Physical examination showed fever, with a temperature of 39.3℃, and laboratory examination results demonstrated a normal leukocyte count (5320/µL), normal neutrophils (67.6%), normal lymphocytes (24.5%), decreased aspartate aminotransferase (14 IU/L), elevated glucose (6.8 mmol/L), and normal CRP (4.00 mg/L). |
T29 | 2027-2117 | Sentence | denotes | Finally, he was diagnosed with 2019-nCoV based on the rRT-PCR analysis of a sputum sample. |
T30 | 2118-2202 | Sentence | denotes | CT imaging showed small ill-defined ground-glass opacities in both lower lung lobes. |
T31 | 2203-2355 | Sentence | denotes | The lesion in the left lower lobe was located in the subpleural region while the one in the right lower lobe was distributed along the bundles (Fig. 2). |
T32 | 2356-2411 | Sentence | denotes | Neither pleural effusion nor lymphadenopathy was found. |
LitCovid-PD-HP
Id | Subject | Object | Predicate | Lexical cue | hp_id |
---|---|---|---|---|---|
T5 | 53-58 | Phenotype | denotes | fever | http://purl.obolibrary.org/obo/HP_0001945 |
T6 | 74-79 | Phenotype | denotes | cough | http://purl.obolibrary.org/obo/HP_0012735 |
T7 | 357-362 | Phenotype | denotes | fever | http://purl.obolibrary.org/obo/HP_0001945 |
T8 | 769-779 | Phenotype | denotes | pneumoniae | http://purl.obolibrary.org/obo/HP_0002090 |
T9 | 791-801 | Phenotype | denotes | pneumoniae | http://purl.obolibrary.org/obo/HP_0002090 |
T10 | 1332-1348 | Phenotype | denotes | pleural effusion | http://purl.obolibrary.org/obo/HP_0002202 |
T11 | 1353-1368 | Phenotype | denotes | lymphadenopathy | http://purl.obolibrary.org/obo/HP_0002716 |
T12 | 1422-1427 | Phenotype | denotes | fever | http://purl.obolibrary.org/obo/HP_0001945 |
T13 | 1514-1519 | Phenotype | denotes | fever | http://purl.obolibrary.org/obo/HP_0001945 |
T14 | 1744-1749 | Phenotype | denotes | fever | http://purl.obolibrary.org/obo/HP_0001945 |
T15 | 2364-2380 | Phenotype | denotes | pleural effusion | http://purl.obolibrary.org/obo/HP_0002202 |
T16 | 2385-2400 | Phenotype | denotes | lymphadenopathy | http://purl.obolibrary.org/obo/HP_0002716 |