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PMC:7039714 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
181 6220-6228 Disease denotes fibrosis MESH:D005355
1 0-27 Disease denotes Novel Coronavirus Pneumonia MESH:C000657245
6 109-131 Species denotes 2019 novel coronavirus Tax:2697049
7 133-142 Species denotes 2019-nCoV Tax:2697049
8 199-207 Disease denotes COVID-19 MESH:C000657245
9 353-372 Disease denotes 2019-nCoV pneumonia MESH:C000657245
22 754-776 Species denotes 2019 novel coronavirus Tax:2697049
23 778-787 Species denotes 2019-nCoV Tax:2697049
24 1069-1077 Species denotes patients Tax:9606
25 1090-1099 Species denotes 2019-nCoV Tax:2697049
26 1142-1150 Species denotes patients Tax:9606
27 1208-1214 Species denotes People Tax:9606
28 1274-1280 Species denotes People Tax:9606
29 654-663 Disease denotes pneumonia MESH:D011014
30 844-852 Disease denotes COVID-19 MESH:C000657245
31 976-982 Disease denotes deaths MESH:D003643
32 1078-1086 Disease denotes infected MESH:D007239
33 1166-1185 Disease denotes 2019-nCoV pneumonia MESH:C000657245
51 1960-1978 Gene denotes C-reactive protein Gene:1401
52 1532-1538 Species denotes People Tax:9606
53 1555-1562 Species denotes patient Tax:9606
54 1997-2004 Species denotes patient Tax:9606
55 2072-2099 Species denotes respiratory syncytial virus Tax:12814
56 2101-2111 Species denotes adenovirus Tax:10508
57 2113-2130 Species denotes influenza A virus Tax:11320
58 2132-2153 Species denotes Mycoplasma pneumoniae Tax:2104
59 2155-2175 Species denotes Chlamydia pneumoniae Tax:83558
60 2226-2243 Species denotes influenza B virus Tax:11520
61 2333-2342 Species denotes 2019-nCoV Tax:2697049
62 2038-2049 Species denotes respiratory Tax:12814
63 2253-2262 Species denotes influenza Tax:11520
64 1925-1932 Chemical denotes glucose MESH:D005947
65 1427-1432 Disease denotes fever MESH:D005334
66 1448-1453 Disease denotes cough MESH:D003371
67 1731-1736 Disease denotes fever MESH:D005334
70 2706-2722 Disease denotes pleural effusion MESH:D010996
71 2727-2742 Disease denotes lymphadenopathy MESH:D008206
81 3384-3387 Gene denotes CRP Gene:1401
82 2870-2876 Species denotes People Tax:9606
83 2984-2991 Species denotes patient Tax:9606
84 3061-3068 Species denotes patient Tax:9606
85 3432-3441 Species denotes 2019-nCoV Tax:2697049
86 3351-3358 Chemical denotes glucose MESH:D005947
87 2796-2801 Disease denotes fever MESH:D005334
88 2888-2893 Disease denotes fever MESH:D005334
89 3118-3123 Disease denotes fever MESH:D005334
93 3565-3575 Disease denotes lung lobes MESH:D008171
94 3738-3754 Disease denotes pleural effusion MESH:D010996
95 3759-3774 Disease denotes lymphadenopathy MESH:D008206
117 3857-3868 Species denotes coronavirus Tax:11118
118 3874-3883 Species denotes 2019-nCoV Tax:2697049
119 3913-3924 Species denotes coronavirus Tax:11118
120 3946-3990 Species denotes Middle East Respiratory Syndrome Coronavirus Tax:1335626
121 3995-4040 Species denotes Severe Acute Respiratory Syndrome Coronavirus Tax:694009
122 4042-4050 Species denotes SARS-CoV Tax:694009
123 4071-4079 Species denotes patients Tax:9606
124 4218-4246 Species denotes Chinese rufous horseshoe bat Tax:89399
125 4248-4267 Species denotes Rhinolophus sinicus Tax:89399
126 4293-4302 Species denotes 2019-nCoV Tax:2697049
127 4359-4365 Species denotes People Tax:9606
128 4435-4443 Species denotes patients Tax:9606
129 4532-4541 Species denotes 2019-nCoV Tax:2697049
130 3807-3826 Disease denotes 2019-nCoV pneumonia MESH:C000657245
131 4164-4173 Disease denotes infection MESH:D007239
132 4399-4418 Disease denotes 2019-nCoV infection MESH:C000657245
133 4669-4674 Disease denotes fever MESH:D005334
134 4724-4731 Disease denotes fatigue MESH:D005221
135 4733-4742 Disease denotes dry cough MESH:D003371
136 4748-4756 Disease denotes diarrhea MESH:D003967
137 4762-4797 Disease denotes acute respiratory distress syndrome MESH:D012128
146 5101-5104 Gene denotes CRP Gene:1401
147 5192-5195 Gene denotes CRP Gene:1401
148 4839-4847 Species denotes patients Tax:9606
149 4994-5002 Species denotes patients Tax:9606
150 5290-5297 Species denotes patient Tax:9606
151 4904-4909 Disease denotes fever MESH:D005334
152 5129-5145 Disease denotes viral infections MESH:D001102
153 5372-5391 Disease denotes 2019-nCoV pneumonia MESH:C000657245
168 5546-5554 Species denotes patients Tax:9606
169 5791-5798 Species denotes patient Tax:9606
170 5882-5890 Species denotes patients Tax:9606
171 6339-6347 Species denotes patients Tax:9606
172 5806-5822 Disease denotes pleural effusion MESH:D010996
173 5826-5841 Disease denotes lymphadenopathy MESH:D008206
174 5850-5854 Disease denotes SARS MESH:D045169
175 5873-5881 Disease denotes infected MESH:D007239
176 5922-5934 Disease denotes lung lesions MESH:D008171
177 6035-6056 Disease denotes mediastinal emphysema MESH:D008478
178 6084-6096 Disease denotes lung lesions MESH:D008171
179 6148-6164 Disease denotes bronchopneumonia MESH:D001996
180 6179-6194 Disease denotes viral infection MESH:D001102
187 6476-6484 Species denotes patients Tax:9606
188 6716-6724 Species denotes patients Tax:9606
189 6853-6870 Species denotes novel coronavirus Tax:2697049
190 6490-6509 Disease denotes 2019-nCoV pneumonia MESH:C000657245
191 6743-6748 Disease denotes fever MESH:D005334
225 7068-7100 Disease denotes 2019-novel coronavirus pneumonia MESH:C000657245
227 7515-7547 Disease denotes 2019-novel coronavirus pneumonia MESH:C000657245

LitCovid_Glycan-Motif-Structure

Id Subject Object Predicate Lexical cue
T1 1925-1932 https://glytoucan.org/Structures/Glycans/G15021LG denotes glucose
T2 2263-2272 https://glytoucan.org/Structures/Glycans/G71832QJ denotes A antigen
T3 3351-3358 https://glytoucan.org/Structures/Glycans/G15021LG denotes glucose

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 378-383 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T2 492-497 Body_part denotes lungs http://purl.org/sig/ont/fma/fma68877
T3 587-592 Body_part denotes lungs http://purl.org/sig/ont/fma/fma68877
T4 1026-1031 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T5 1117-1122 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T6 1745-1749 Body_part denotes body http://purl.org/sig/ont/fma/fma256135
T7 1827-1836 Body_part denotes leukocyte http://purl.org/sig/ont/fma/fma62852
T8 1864-1875 Body_part denotes neutrophils http://purl.org/sig/ont/fma/fma62860
T9 1895-1906 Body_part denotes lymphocytes http://purl.org/sig/ont/fma/fma62863
T10 1925-1932 Body_part denotes glucose http://purl.org/sig/ont/fma/fma82743
T11 1971-1978 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T12 2451-2454 Body_part denotes DNA http://purl.org/sig/ont/fma/fma74412
T13 2462-2468 Body_part denotes sputum http://purl.org/sig/ont/fma/fma312401
T14 2586-2591 Body_part denotes lungs http://purl.org/sig/ont/fma/fma68877
T15 2675-2679 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T16 2806-2812 Body_part denotes throat http://purl.org/sig/ont/fma/fma228738
T17 3211-3220 Body_part denotes leukocyte http://purl.org/sig/ont/fma/fma62852
T18 3245-3256 Body_part denotes neutrophils http://purl.org/sig/ont/fma/fma62860
T19 3273-3284 Body_part denotes lymphocytes http://purl.org/sig/ont/fma/fma62863
T20 3351-3358 Body_part denotes glucose http://purl.org/sig/ont/fma/fma82743
T21 3477-3483 Body_part denotes sputum http://purl.org/sig/ont/fma/fma312401
T22 3565-3569 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T23 3595-3610 Body_part denotes left lower lobe http://purl.org/sig/ont/fma/fma7371
T24 3669-3685 Body_part denotes right lower lobe http://purl.org/sig/ont/fma/fma7337
T25 5014-5023 Body_part denotes leukocyte http://purl.org/sig/ont/fma/fma62852
T26 5076-5087 Body_part denotes lymphocytes http://purl.org/sig/ont/fma/fma62863
T27 5176-5187 Body_part denotes lymphocytes http://purl.org/sig/ont/fma/fma62863
T28 5650-5655 Body_part denotes lungs http://purl.org/sig/ont/fma/fma68877
T29 5922-5926 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T30 5946-5951 Body_part denotes lungs http://purl.org/sig/ont/fma/fma68877
T31 6024-6029 Body_part denotes lungs http://purl.org/sig/ont/fma/fma68877
T32 6084-6088 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T33 6511-6516 Body_part denotes Chest http://purl.org/sig/ont/fma/fma9576
T34 6706-6711 Body_part denotes lungs http://purl.org/sig/ont/fma/fma68877
T35 6871-6874 Body_part denotes DNA http://purl.org/sig/ont/fma/fma74412
T36 7167-7192 Body_part denotes lower lobes of right lung http://purl.org/sig/ont/fma/fma7337
T37 7182-7192 Body_part denotes right lung http://purl.org/sig/ont/fma/fma7309
T38 7197-7220 Body_part denotes lower lobe of left lung http://purl.org/sig/ont/fma/fma7371
T39 7466-7470 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T40 7649-7672 Body_part denotes bronchovascular bundles http://purl.org/sig/ont/fma/fma84474
T41 7688-7692 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T42 7785-7789 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 378-383 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T2 1026-1031 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T3 1117-1122 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T4 2462-2468 Body_part denotes sputum http://purl.obolibrary.org/obo/UBERON_0007311
T5 2675-2679 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T6 2706-2722 Body_part denotes pleural effusion http://purl.obolibrary.org/obo/UBERON_0000175
T7 2806-2812 Body_part denotes throat http://purl.obolibrary.org/obo/UBERON_0000341
T8 3477-3483 Body_part denotes sputum http://purl.obolibrary.org/obo/UBERON_0007311
T9 3565-3569 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T10 3606-3610 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T11 3681-3685 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T12 3738-3754 Body_part denotes pleural effusion http://purl.obolibrary.org/obo/UBERON_0000175
T13 5806-5822 Body_part denotes pleural effusion http://purl.obolibrary.org/obo/UBERON_0000175
T14 5922-5926 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T15 6084-6088 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T16 6413-6418 Body_part denotes scale http://purl.obolibrary.org/obo/UBERON_0002542
T17 6511-6516 Body_part denotes Chest http://purl.obolibrary.org/obo/UBERON_0001443
T18 7167-7192 Body_part denotes lower lobes of right lung http://purl.obolibrary.org/obo/UBERON_0002171
T19 7182-7192 Body_part denotes right lung http://purl.obolibrary.org/obo/UBERON_0002167
T20 7188-7192 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T21 7197-7220 Body_part denotes lower lobe of left lung http://purl.obolibrary.org/obo/UBERON_0008953
T22 7203-7207 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T23 7211-7220 Body_part denotes left lung http://purl.obolibrary.org/obo/UBERON_0002168
T24 7216-7220 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T25 7466-7470 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T26 7471-7475 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T27 7688-7692 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T28 7693-7697 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T29 7785-7789 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T30 7790-7794 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 18-27 Disease denotes Pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T2 199-207 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T3 363-372 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T4 654-663 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T5 844-852 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T6 1176-1185 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T7 2113-2122 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T8 2132-2153 Disease denotes Mycoplasma pneumoniae http://purl.obolibrary.org/obo/MONDO_0005867
T9 2155-2175 Disease denotes Chlamydia pneumoniae http://purl.obolibrary.org/obo/MONDO_0025598
T10 2177-2187 Disease denotes Legionella http://purl.obolibrary.org/obo/MONDO_0005824
T11 2226-2235 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T12 2253-2262 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T13 2311-2313 Disease denotes he http://purl.obolibrary.org/obo/MONDO_0017319
T14 2727-2742 Disease denotes lymphadenopathy http://purl.obolibrary.org/obo/MONDO_0005833
T15 2879-2893 Disease denotes Hospital fever http://purl.obolibrary.org/obo/MONDO_0001246
T16 3024-3026 Disease denotes he http://purl.obolibrary.org/obo/MONDO_0017319
T17 3410-3412 Disease denotes he http://purl.obolibrary.org/obo/MONDO_0017319
T18 3759-3774 Disease denotes lymphadenopathy http://purl.obolibrary.org/obo/MONDO_0005833
T19 3817-3826 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T20 3995-4028 Disease denotes Severe Acute Respiratory Syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T21 4042-4050 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T22 4164-4173 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T23 4399-4418 Disease denotes 2019-nCoV infection http://purl.obolibrary.org/obo/MONDO_0100096
T24 4409-4418 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T25 4748-4756 Disease denotes diarrhea http://purl.obolibrary.org/obo/MONDO_0001673
T26 4762-4797 Disease denotes acute respiratory distress syndrome http://purl.obolibrary.org/obo/MONDO_0006502
T27 4768-4797 Disease denotes respiratory distress syndrome http://purl.obolibrary.org/obo/MONDO_0009971
T28 5129-5145 Disease denotes viral infections http://purl.obolibrary.org/obo/MONDO_0005108
T29 5382-5391 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T30 5826-5841 Disease denotes lymphadenopathy http://purl.obolibrary.org/obo/MONDO_0005833
T31 5850-5854 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T32 6047-6056 Disease denotes emphysema http://purl.obolibrary.org/obo/MONDO_0004849
T33 6148-6164 Disease denotes bronchopneumonia http://purl.obolibrary.org/obo/MONDO_0005682
T34 6179-6194 Disease denotes viral infection http://purl.obolibrary.org/obo/MONDO_0005108
T35 6185-6194 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T36 6500-6509 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T37 7091-7100 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T38 7538-7547 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 183-195 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T2 275-276 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T3 378-383 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T4 492-497 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lungs
T5 587-592 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lungs
T6 629-630 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T7 684-687 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T8 828-840 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T9 901-906 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T10 931-933 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T11 1009-1010 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T12 1026-1031 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T13 1117-1122 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T14 1394-1395 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T15 1396-1398 http://purl.obolibrary.org/obo/CLO_0001000 denotes 35
T16 1567-1568 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T17 1743-1744 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T18 1818-1819 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T19 2005-2011 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T20 2094-2099 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T21 2123-2124 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T22 2125-2130 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T23 2215-2220 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T24 2236-2237 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T25 2238-2243 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T26 2263-2264 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T27 2460-2461 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T28 2586-2591 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lungs
T29 2675-2679 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T30 2675-2679 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T31 2706-2722 http://purl.obolibrary.org/obo/UBERON_0000175 denotes pleural effusion
T32 2762-2763 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T33 2909-2910 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T34 3031-3032 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T35 3130-3131 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T36 3202-3203 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T37 3475-3476 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T38 3565-3569 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T39 3565-3569 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T40 3738-3754 http://purl.obolibrary.org/obo/UBERON_0000175 denotes pleural effusion
T41 3841-3842 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T42 4084-4085 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T43 4196-4203 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animals
T44 4243-4246 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T45 4600-4605 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T46 4680-4681 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T47 5052-5053 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T48 5302-5303 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T49 5650-5655 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lungs
T50 5806-5822 http://purl.obolibrary.org/obo/UBERON_0000175 denotes pleural effusion
T51 5922-5926 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T52 5922-5926 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T53 5946-5951 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lungs
T54 5988-5989 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T55 6024-6029 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lungs
T56 6084-6088 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T57 6084-6088 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T58 6511-6516 http://www.ebi.ac.uk/efo/EFO_0000965 denotes Chest
T59 6706-6711 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lungs
T60 6730-6731 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T61 7102-7103 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T62 7182-7192 http://purl.obolibrary.org/obo/UBERON_0002167 denotes right lung
T63 7211-7220 http://purl.obolibrary.org/obo/UBERON_0002168 denotes left lung
T64 7466-7470 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T65 7466-7470 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T66 7549-7550 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T67 7552-7553 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T68 7688-7692 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T69 7688-7692 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T70 7699-7700 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T71 7785-7789 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T72 7785-7789 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T73 7796-7797 http://purl.obolibrary.org/obo/CLO_0001021 denotes B

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 1925-1932 Chemical denotes glucose http://purl.obolibrary.org/obo/CHEBI_17234|http://purl.obolibrary.org/obo/CHEBI_4167
T3 1971-1978 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T4 2263-2272 Chemical denotes A antigen http://purl.obolibrary.org/obo/CHEBI_139352
T5 2265-2272 Chemical denotes antigen http://purl.obolibrary.org/obo/CHEBI_59132
T6 2451-2454 Chemical denotes DNA http://purl.obolibrary.org/obo/CHEBI_16991
T7 3304-3313 Chemical denotes aspartate http://purl.obolibrary.org/obo/CHEBI_132943|http://purl.obolibrary.org/obo/CHEBI_29995|http://purl.obolibrary.org/obo/CHEBI_72314
T10 3351-3358 Chemical denotes glucose http://purl.obolibrary.org/obo/CHEBI_17234|http://purl.obolibrary.org/obo/CHEBI_4167
T12 6871-6874 Chemical denotes DNA http://purl.obolibrary.org/obo/CHEBI_16991

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 2374-2387 http://purl.obolibrary.org/obo/GO_0003968 denotes transcriptase
T2 2374-2387 http://purl.obolibrary.org/obo/GO_0003899 denotes transcriptase
T3 5129-5145 http://purl.obolibrary.org/obo/GO_0016032 denotes viral infections
T4 6179-6194 http://purl.obolibrary.org/obo/GO_0016032 denotes viral infection

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T1 0-45 Sentence denotes Novel Coronavirus Pneumonia Outbreak in 2019:
T2 46-88 Sentence denotes Computed Tomographic Findings in Two Cases
T3 90-98 Sentence denotes Abstract
T4 99-313 Sentence denotes Since the 2019 novel coronavirus (2019-nCoV or officially named by the World Health Organization as COVID-19) outbreak in Wuhan, Hubei Province, China in 2019, there have been a few reports of its imaging findings.
T5 314-498 Sentence denotes Here, we report two confirmed cases of 2019-nCoV pneumonia with chest computed tomography findings of multiple regions of patchy consolidation and ground-glass opacities in both lungs.
T6 499-593 Sentence denotes These findings were characteristically located along the bronchial bundle or subpleural lungs.
T7 595-607 Sentence denotes INTRODUCTION
T8 608-729 Sentence denotes Since December 2019, a succession of cases of pneumonia with unknown causes has appeared in Wuhan, Hubei Province, China.
T9 730-919 Sentence denotes On January 7, 2020, the 2019 novel coronavirus (2019-nCoV or officially named by the World Health Organization as COVID-19) was identified as the causative agent based on virus typing (12).
T10 920-983 Sentence denotes By January 27, 2020, 2823 cases were confirmed, with 81 deaths.
T11 984-1100 Sentence denotes To date, there have been a few reports of chest computed tomography (CT) findings in patients infected by 2019-nCoV.
T12 1101-1226 Sentence denotes Here, we report chest CT findings in two patients confirmed with 2019-nCoV pneumonia at Jiangxi Provincial People's Hospital.
T13 1227-1372 Sentence denotes This report was approved by Jiangxi Provincial People's Hospital Institutional Review Board, and the requirement for informed consent was waived.
T14 1374-1385 Sentence denotes CASE REPORT
T15 1387-1393 Sentence denotes Case 1
T16 1394-1550 Sentence denotes A 35-year-old man presented with fever for 3 days and cough for 2 days and was admitted to the emergency department of Jiangxi Provincial People's Hospital.
T17 1551-1702 Sentence denotes The patient had a history of good physical health with no underlying diseases but had returned to Nanchang, Jiangxi Province, from Wuhan 1 week before.
T18 1703-1992 Sentence denotes Physical examination showed fever, with a body temperature of 38.7℃, and the laboratory examination results showed a normal leukocyte count (5520/µL), increased neutrophils (76.2%), decreased lymphocytes (16.1%), elevated glucose (7.4 mmol/L), and elevated C-reactive protein (14.00 mg/L).
T19 1993-2301 Sentence denotes The patient tested negative for eight common respiratory pathogens, which were respiratory syncytial virus, adenovirus, influenza A virus, Mycoplasma pneumoniae, Chlamydia pneumoniae, Legionella pneumophila, parainfluenza virus, and influenza B virus, and the influenza A antigen screening was also negative.
T20 2302-2476 Sentence denotes Finally, he was diagnosed with 2019-nCoV based on the real-time reverse-transcriptase-polymerase chain reaction (rRT-PCR) amplification of the viral DNA from a sputum sample.
T21 2477-2592 Sentence denotes CT showed multiple regions of patchy consolidation and ground-glass opacities with indistinct border in both lungs.
T22 2593-2697 Sentence denotes The lesions were distributed along the bronchial bundles or within the subpleural lung regions (Fig. 1).
T23 2698-2753 Sentence denotes Neither pleural effusion nor lymphadenopathy was found.
T24 2755-2761 Sentence denotes Case 2
T25 2762-2901 Sentence denotes A 39-year-old man presenting with fever and throat discomfort for 2 days was admitted to Jiangxi Provincial People's Hospital fever clinic.
T26 2902-2970 Sentence denotes He had a history of good physical health and no underlying diseases.
T27 2971-3089 Sentence denotes Although the patient had not visited Wuhan recently, he had a history of contact with the patient described in Case 1.
T28 3090-3400 Sentence denotes Physical examination showed fever, with a temperature of 39.3℃, and laboratory examination results demonstrated a normal leukocyte count (5320/µL), normal neutrophils (67.6%), normal lymphocytes (24.5%), decreased aspartate aminotransferase (14 IU/L), elevated glucose (6.8 mmol/L), and normal CRP (4.00 mg/L).
T29 3401-3491 Sentence denotes Finally, he was diagnosed with 2019-nCoV based on the rRT-PCR analysis of a sputum sample.
T30 3492-3576 Sentence denotes CT imaging showed small ill-defined ground-glass opacities in both lower lung lobes.
T31 3577-3729 Sentence denotes The lesion in the left lower lobe was located in the subpleural region while the one in the right lower lobe was distributed along the bundles (Fig. 2).
T32 3730-3785 Sentence denotes Neither pleural effusion nor lymphadenopathy was found.
T33 3787-3797 Sentence denotes DISCUSSION
T34 3798-3869 Sentence denotes Cases of 2019-nCoV pneumonia are caused by a novel type of coronavirus.
T35 3870-4059 Sentence denotes The 2019-nCoV is the seventh member of the coronavirus family that includes Middle East Respiratory Syndrome Coronavirus and Severe Acute Respiratory Syndrome Coronavirus (SARS-CoV) (1234).
T36 4060-4149 Sentence denotes Most early patients had a history of exposure to the South China Seafood Market in Wuhan.
T37 4150-4276 Sentence denotes The source of infection is thought to be wild animals, possibly the Chinese rufous horseshoe bat (Rhinolophus sinicus) (5678).
T38 4277-4358 Sentence denotes Transmission of 2019-nCoV is mainly via droplets but can also be through contact.
T39 4359-4506 Sentence denotes People are generally susceptible to the 2019-nCoV infection and the elderly patients or those with underlying diseases are more seriously affected.
T40 4507-4648 Sentence denotes The incubation period of 2019-nCoV is generally 3–7 days but no longer than 14 days, and the virus is infective during the incubation period.
T41 4649-4700 Sentence denotes The main symptom is fever with a temperature > 38℃.
T42 4701-4830 Sentence denotes Other symptoms include fatigue, dry cough, and diarrhea, and acute respiratory distress syndrome can occur in severe cases (910).
T43 4831-4939 Sentence denotes The two patients described here were admitted to our hospital because of fever and relatively mild symptoms.
T44 4940-5031 Sentence denotes According to the laboratory examination results, both patients had normal leukocyte counts.
T45 5032-5146 Sentence denotes However, case 1 had a reduced percentage of lymphocytes and elevated CRP levels, consistent with viral infections.
T46 5147-5298 Sentence denotes In case 2, the percentage of lymphocytes and CRP levels were normal, although this difference may be attributed to the milder symptoms of this patient.
T47 5299-5362 Sentence denotes As a result, this case was prone to misdiagnosis in the clinic.
T48 5363-5540 Sentence denotes However, 2019-nCoV pneumonia was diagnosed in case 2 based on the characteristic CT findings, which were further confirmed using positive results of the timely rRT-PCR analysis.
T49 5541-5782 Sentence denotes Both patients reported here showed multiple areas of patchy consolidation and ground-glass opacities in both lungs, with most of the lesions distributed along the bronchial bundles or in the subpleural areas, particularly in the lower lobes.
T50 5783-5842 Sentence denotes Neither patient showed pleural effusion or lymphadenopathy.
T51 5843-6064 Sentence denotes In the SARS outbreak in 2003, infected patients exhibited rapid progression of lung lesions, with both lungs showing diffuse infiltration within a short period and producing “white lungs” and mediastinal emphysema (1112).
T52 6065-6195 Sentence denotes In contrast, these lung lesions are relatively mild and are easily misdiagnosed as bronchopneumonia or any common viral infection.
T53 6196-6427 Sentence denotes In addition, no obvious fibrosis was found in these cases, which may be related to the short course and mild intensity of the disease in these patients; this speculation remains to be confirmed using subsequent large-scale studies.
T54 6428-6510 Sentence denotes In conclusion, we report the CT findings in two patients with 2019-nCoV pneumonia.
T55 6511-6595 Sentence denotes Chest CT showed multiple regions of patchy consolidation and ground-glass opacities.
T56 6596-6712 Sentence denotes Furthermore, the lesions were typically distributed along the bronchial bundles or subpleural regions in both lungs.
T57 6713-6939 Sentence denotes In patients with a history of fever or contact with the epidemic area combined with the CT findings described here, timely detection of the novel coronavirus DNA is required to ensure early diagnosis, isolation, and treatment.
T58 6941-6963 Sentence denotes Conflicts of Interest:
T59 6964-7028 Sentence denotes The authors have no potential conflicts of interest to disclose.
T60 7030-7101 Sentence denotes Fig. 1 Thirty five-year-old man with 2019-novel coronavirus pneumonia.
T61 7102-7106 Sentence denotes A–D.
T62 7107-7371 Sentence denotes Axial computed tomography (CT) images of upper, middle, and lower lobes of right lung and lower lobe of left lung show multifocal regions of patchy consolidation and nodular ground-glass opacities, mainly distributed along bronchial bundles and subpleural regions.
T63 7372-7374 Sentence denotes E.
T64 7375-7476 Sentence denotes Coronal reformation CT image shows multifocal nodular groundglass opacities in right lower lung lobe.
T65 7477-7548 Sentence denotes Fig. 2 Thirty nine-year-old man with 2019-novel coronavirus pneumonia.
T66 7549-7554 Sentence denotes A, B.
T67 7555-7799 Sentence denotes High-resolution computed tomography images show ill-defined focal consolidation (arrow) along bronchovascular bundles in right lower lung lobe (A) and ill-defined ground-glass opacities (arrow) in subpleural regions of left lower lung lobe (B).

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 18-27 Phenotype denotes Pneumonia http://purl.obolibrary.org/obo/HP_0002090
T2 363-372 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T3 654-663 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T4 1176-1185 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T5 1427-1432 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T6 1448-1453 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T7 1731-1736 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T8 2143-2153 Phenotype denotes pneumoniae http://purl.obolibrary.org/obo/HP_0002090
T9 2165-2175 Phenotype denotes pneumoniae http://purl.obolibrary.org/obo/HP_0002090
T10 2706-2722 Phenotype denotes pleural effusion http://purl.obolibrary.org/obo/HP_0002202
T11 2727-2742 Phenotype denotes lymphadenopathy http://purl.obolibrary.org/obo/HP_0002716
T12 2796-2801 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T13 2888-2893 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T14 3118-3123 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T15 3738-3754 Phenotype denotes pleural effusion http://purl.obolibrary.org/obo/HP_0002202
T16 3759-3774 Phenotype denotes lymphadenopathy http://purl.obolibrary.org/obo/HP_0002716
T17 3817-3826 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T18 4669-4674 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T19 4724-4731 Phenotype denotes fatigue http://purl.obolibrary.org/obo/HP_0012378
T20 4733-4742 Phenotype denotes dry cough http://purl.obolibrary.org/obo/HP_0031246
T21 4748-4756 Phenotype denotes diarrhea http://purl.obolibrary.org/obo/HP_0002014
T22 4768-4788 Phenotype denotes respiratory distress http://purl.obolibrary.org/obo/HP_0002098
T23 4904-4909 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T24 5092-5104 Phenotype denotes elevated CRP http://purl.obolibrary.org/obo/HP_0011227
T25 5382-5391 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T26 5806-5822 Phenotype denotes pleural effusion http://purl.obolibrary.org/obo/HP_0002202
T27 5826-5841 Phenotype denotes lymphadenopathy http://purl.obolibrary.org/obo/HP_0002716
T28 6047-6056 Phenotype denotes emphysema http://purl.obolibrary.org/obo/HP_0002097
T29 6500-6509 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T30 6743-6748 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T31 7091-7100 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T32 7538-7547 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090

2_test

Id Subject Object Predicate Lexical cue
32056397-26798230-66065283 4053-4057 26798230 denotes 1234
32056397-31991541-66065284 4270-4273 31991541 denotes 567
32056397-31986259-66065285 4270-4274 31986259 denotes 5678
32056397-31953166-66065286 4825-4828 31953166 denotes 910
32056397-14990845-66065287 6058-6060 14990845 denotes 11
32056397-14684509-66065288 6058-6062 14684509 denotes 1112