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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
2 0-9 Species denotes 2019-nCoV Tax:2697049
3 23-31 Species denotes children Tax:9606
11 155-166 Species denotes Coronavirus Tax:11118
12 188-193 Species denotes human Tax:9606
13 224-234 Species denotes 2019- nCoV Tax:2697049
14 283-292 Species denotes 2019-nCoV Tax:2697049
15 416-422 Species denotes people Tax:9606
16 777-783 Species denotes people Tax:9606
17 253-272 Disease denotes respiratory illness MESH:D012140
20 1041-1057 Species denotes novelcoronavirus Tax:2697049
21 962-968 Disease denotes deaths MESH:D003643
25 1196-1202 Species denotes people Tax:9606
26 1379-1385 Species denotes people Tax:9606
27 1444-1450 Species denotes people Tax:9606
30 1635-1643 Species denotes children Tax:9606
31 1809-1828 Disease denotes respiratory disease MESH:D012140
35 2190-2198 Species denotes patients Tax:9606
36 2239-2247 Species denotes children Tax:9606
37 2280-2300 Disease denotes Coronavirus diseases MESH:D018352
55 2421-2448 Species denotes SARS-associated coronavirus Tax:694009
56 2450-2458 Species denotes SARS-CoV Tax:694009
57 2725-2733 Species denotes patients Tax:9606
58 2864-2872 Species denotes patients Tax:9606
59 2951-2959 Species denotes children Tax:9606
60 3099-3107 Species denotes children Tax:9606
61 3180-3190 Species denotes SARS virus Tax:694009
62 3208-3215 Species denotes patient Tax:9606
63 3023-3029 Chemical denotes oxygen MESH:D010100
64 3049-3067 Chemical denotes methylprednisolone MESH:D008775
65 2302-2335 Disease denotes Severe acute respiratory syndrome MESH:D045169
66 2337-2341 Disease denotes SARS MESH:D045169
67 2477-2485 Disease denotes infected MESH:D007239
68 2570-2574 Disease denotes SARS MESH:D045169
69 2720-2724 Disease denotes SARS MESH:D045169
70 3072-3078 Disease denotes deaths MESH:D003643
71 3128-3132 Disease denotes SARS MESH:D045169
76 3372-3384 Species denotes Corona Virus Tax:11118
77 3440-3448 Species denotes children Tax:9606
78 3301-3333 Disease denotes Middle East Respiratory Syndrome MESH:D018352
79 3335-3339 Disease denotes MERS MESH:D018352
82 3600-3608 Species denotes children Tax:9606
83 3497-3508 Species denotes respiratory Tax:12814
97 3857-3865 Species denotes children Tax:9606
98 4007-4016 Species denotes 2019-nCov Tax:2697049
99 4029-4034 Species denotes child Tax:9606
100 4104-4113 Species denotes 2019-nCov Tax:2697049
101 4158-4165 Species denotes patient Tax:9606
102 4213-4218 Species denotes child Tax:9606
103 4315-4323 Species denotes children Tax:9606
104 3892-3901 Disease denotes infection MESH:D007239
105 3957-3966 Disease denotes infection MESH:D007239
106 4171-4180 Disease denotes pneumonia MESH:D011014
107 4198-4207 Disease denotes infection MESH:D007239
108 4302-4311 Disease denotes infection MESH:D007239
109 4431-4450 Disease denotes respiratory disease MESH:D012140
118 4650-4658 Species denotes children Tax:9606
119 4695-4708 Species denotes Coronaviruses Tax:11118
120 4710-4723 Species denotes Coronaviruses Tax:11118
121 4725-4729 Species denotes CoVs Tax:11118
122 4799-4826 Species denotes respiratory syncytial virus Tax:12814
123 4903-4911 Species denotes children Tax:9606
124 4984-4995 Species denotes respiratory Tax:12814
125 4828-4831 Species denotes RSV Tax:12814
128 5190-5198 Species denotes children Tax:9606
129 5052-5061 Disease denotes pneumonia MESH:D011014
132 5264-5272 Species denotes 2019-CoV Tax:2697049
133 5420-5428 Species denotes children Tax:9606

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T111 2337-2341 SP_10 denotes SARS
T110 2421-2425 SP_10 denotes SARS
T124 155-166 NCBITaxon:11118 denotes Coronavirus
T123 188-193 SP_6;NCBITaxon:9606 denotes human
T122 224-234 SP_7 denotes 2019- nCoV
T121 283-292 SP_7 denotes 2019-nCoV
T120 416-422 NCBITaxon:9606 denotes people
T119 777-783 NCBITaxon:9606 denotes people
T118 962-968 GO:0016265 denotes deaths
T117 1196-1202 NCBITaxon:9606 denotes people
T116 1379-1385 NCBITaxon:9606 denotes people
T115 1444-1450 NCBITaxon:9606 denotes people
T114 1809-1820 UBERON:0001004 denotes respiratory
T113 2280-2291 NCBITaxon:11118 denotes Coronavirus
T112 2315-2326 UBERON:0001004 denotes respiratory
T109 2437-2448 NCBITaxon:11118 denotes coronavirus
T108 2450-2458 SP_10 denotes SARS-CoV
T107 2486-2497 NCBITaxon:1 denotes individuals
T106 2570-2574 SP_10 denotes SARS
T105 2720-2724 SP_10 denotes SARS
T104 3049-3067 CHEBI:12071;DG_36;CHEBI:12071 denotes methylprednisolone
T3 0-9 SP_7 denotes 2019-nCoV
T103 3072-3078 GO:0016265 denotes deaths
T102 3128-3132 SP_10 denotes SARS
T101 3180-3190 NCBITaxon:10633 denotes SARS virus
T100 3335-3339 SP_9 denotes MERS
T99 3372-3378 NCBITaxon:859912 denotes Corona
T98 3497-3508 UBERON:0001004 denotes respiratory
T97 4007-4016 SP_7 denotes 2019-nCov
T96 4104-4113 SP_7 denotes 2019-nCov
T95 4431-4442 UBERON:0001004 denotes respiratory
T94 4695-4708 NCBITaxon:11118 denotes Coronaviruses
T93 4710-4723 NCBITaxon:11118 denotes Coronaviruses
T92 4725-4729 NCBITaxon:11886 denotes CoVs
T91 4752-4759 NCBITaxon:10239 denotes viruses
T90 4776-4781 UBERON:0000170 denotes lungs
T89 4785-4797 NCBITaxon:7729 denotes rhinoviruses
T88 4799-4810 NCBITaxon:12814;UBERON:0001004 denotes respiratory
T87 4811-4820 NCBITaxon:12814 denotes syncytial
T86 4821-4826 NCBITaxon:10239 denotes virus
T85 4828-4831 NCBITaxon:11886 denotes RSV
T84 4838-4847 NCBITaxon:7719 denotes influenza
T83 4871-4877 SO:0001026 denotes genome
T82 4913-4919 GO:0045087 denotes Innate
T81 4920-4926 GO:0045087;UBERON:0002405 denotes immune
T80 4948-4954 GO:0045087 denotes innate
T79 4955-4961 GO:0045087;UBERON:0002405 denotes immune
T78 4962-4971 GO:0045087 denotes responses
T77 4984-4995 GO:0045333;UBERON:0001004 denotes respiratory
T76 5012-5019 NCBITaxon:10239 denotes viruses
T75 5075-5080 NCBITaxon:10239 denotes virus
T74 5089-5095 UBERON:0002405;GO:0006955 denotes immune
T73 5096-5104 GO:0006955 denotes response
T72 5113-5127 GO:0016271 denotes destruction of
T71 5128-5137 UBERON:0002048 denotes pulmonary
T70 5138-5144 UBERON:0000479 denotes tissue
T69 5217-5224 CHEBI:33695;CHEBI:33695 denotes message

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 4776-4781 Body_part denotes lungs http://purl.org/sig/ont/fma/fma68877
T2 4867-4870 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T3 4871-4877 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T4 5007-5010 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T5 5138-5144 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 5138-5144 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 1809-1828 Disease denotes respiratory disease http://purl.obolibrary.org/obo/MONDO_0005087
T2 2302-2335 Disease denotes Severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T3 2337-2341 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T4 2421-2425 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T5 2450-2458 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T6 2450-2454 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T7 2570-2574 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T8 2720-2724 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T9 3128-3132 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T10 3180-3184 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T11 3892-3901 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T12 3957-3966 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T13 4171-4180 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T14 4198-4207 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T15 4302-4311 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T16 4431-4450 Disease denotes respiratory disease http://purl.obolibrary.org/obo/MONDO_0005087
T17 4838-4847 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T18 5052-5061 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 34-35 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T2 188-193 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T3 597-598 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T4 982-983 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T5 1038-1040 http://purl.obolibrary.org/obo/CLO_0037161 denotes en
T6 1086-1089 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T7 1268-1271 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T8 1292-1293 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T9 1855-1858 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T10 1868-1869 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T11 2036-2037 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T12 2148-2150 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T13 2158-2160 http://purl.obolibrary.org/obo/CLO_0001022 denotes Li
T14 2158-2160 http://purl.obolibrary.org/obo/CLO_0007314 denotes Li
T15 2510-2512 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T16 2531-2532 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T17 2760-2762 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T18 3185-3190 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T19 3196-3197 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T20 3379-3384 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes Virus
T21 3568-3569 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T22 4027-4028 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T23 4035-4038 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T24 4156-4157 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T25 4211-4212 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T26 4356-4365 http://www.ebi.ac.uk/efo/EFO_0000876 denotes extremely
T27 4752-4759 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T28 4776-4781 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lungs
T29 4821-4826 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T30 5012-5019 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T31 5075-5080 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T32 5203-5204 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T33 5447-5448 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T34 5519-5520 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 1038-1040 Chemical denotes en http://purl.obolibrary.org/obo/CHEBI_30347
T2 2158-2160 Chemical denotes Li http://purl.obolibrary.org/obo/CHEBI_30145
T3 3023-3029 Chemical denotes oxygen http://purl.obolibrary.org/obo/CHEBI_25805
T4 3049-3067 Chemical denotes methylprednisolone http://purl.obolibrary.org/obo/CHEBI_6888

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 549-557 http://purl.obolibrary.org/obo/GO_0015297 denotes exchange
T2 4920-4934 http://purl.obolibrary.org/obo/GO_0042783 denotes immune evasion
T3 4948-4971 http://purl.obolibrary.org/obo/GO_0045087 denotes innate immune responses
T4 5089-5104 http://purl.obolibrary.org/obo/GO_0006955 denotes immune response

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T1 0-10 Sentence denotes 2019-nCoV:
T2 11-32 Sentence denotes Polite with children!
T3 34-96 Sentence denotes A novel epidemic is challenging the global health care system.
T4 97-353 Sentence denotes Starting from probably November to December 2019, another Coronavirus entered the arena of human pathogens, to be then defined 2019- nCoV.1 The outbreak of respiratory illness caused by 2019-nCoV was initially detected in Wuhan City, Hubei Province, China.
T5 354-435 Sentence denotes China Republic arranged strong restrictions to limit domestic people circulation.
T6 436-667 Sentence denotes Within days, most European countries and the United States established an unrestricted scientific cooperation to exchange data and information, useful to design a defensive wall against the worldwide spreading of this new epidemic.
T7 668-886 Sentence denotes Spreading is favored by universal access to intercontinental mobility by airplane, and propensity of Chinese people to massively migrate within, but also outside, their subcontinent especially during national holidays.
T8 887-1065 Sentence denotes As of February 5, 2020, the number of confirmed cases was 24,554, with 492 deaths resulting in a crude fatality rate of 2% (https://www.ecdc.europa.eu/en/novelcoronavirus-china).
T9 1066-1190 Sentence denotes Spreading in Europe has been likely slowed down so far by the international coordinated effort, with only 28 cases reported.
T10 1191-1245 Sentence denotes Yet, people are scared by this novel, unknown disease.
T11 1246-1399 Sentence denotes Their daily lifestyle has been affected, with a marked decrease of unnecessary trips abroad, and reduction of events causing massive people accumulation.
T12 1400-1499 Sentence denotes Basic sanitary checks have been enforced on people entering European countries directly from China.
T13 1500-1576 Sentence denotes Questions have been raised even on the opportunity to keep the schools open.
T14 1577-1644 Sentence denotes The fear of unknown diseases is obviously even higher for children.
T15 1645-1829 Sentence denotes As an immediate result, parents are taking their kids to the emergency room of their local hospital more often and in the presence of minimal signs and symptoms of respiratory disease.
T16 1830-1954 Sentence denotes The public health system has arranged a sanitary chain to isolate and quickly screen all possible, but even suspected cases.
T17 1955-2053 Sentence denotes However, this emergency belt might result expensive and hard to be sustained for a very long time.
T18 2054-2301 Sentence denotes In their report of the characteristics of the first 425 cases observed in Wuhan as of January 22, 2020, Li et al. show that none of the patients had less than 15 years of age.2 Is this children-sparing pattern common to other Coronavirus diseases?
T19 2302-2460 Sentence denotes Severe acute respiratory syndrome (SARS) spread in Hong-Kong and then worldwide from March to June 2003, caused by the SARS-associated coronavirus (SARS-CoV).
T20 2461-2660 Sentence denotes Among over 1700 infected individuals, 6.9% were <18 years of age with a case fatality rate of 0%. (Source: e-SARS database, Hospital Authority, Hong Kong Special Administrative Region, data on file).
T21 2661-3068 Sentence denotes In their analysis of 6 case series reporting 135 pediatric SARS patients (80 laboratory-confirmed, 27 probable and 28 suspect) from Canada, Hong Kong, Taiwan and Singapore, Stockman et al. reported that patients 12 years of age or younger had milder disease and were less likely than older children to be admitted to an intensive care unit, receive supplemental oxygen or be treated with methylprednisolone.
T22 3069-3261 Sentence denotes No deaths were reported among children or adolescents with SARS.3 Only one published report of transmission of SARS virus from a pediatric patient was available at the time of writing in 2007.
T23 3262-3450 Sentence denotes In their retrospective analysis of the Middle East Respiratory Syndrome (MERS) spread in 2012, also caused by Corona Virus, Azhar et al. report that only 2% of cases occurred in children.4
T24 3451-3609 Sentence denotes This clearly shows that three different acute respiratory syndromes developed as epidemic in the last decades showed a reduced propensity to involve children.
T25 3610-3815 Sentence denotes Coming to the hottest topic, data from Wuhan show that at an early evaluation, the pediatric population, even in this very-high risk area, appears to be at an unexpectedly low risk to develop the disease.2
T26 3816-3852 Sentence denotes Why may this happen remains unclear.
T27 3853-3967 Sentence denotes Are children absolutely protected from infection or only from the risk to develop the disease following infection?
T28 3968-4067 Sentence denotes Formal demonstration of the ability of 2019-nCov to infect a child has been provided by Chan et al.
T29 4068-4474 Sentence denotes In their report, when screening for 2019-nCov the asymptomatic members of the family of a patient with pneumonia, they documented infection in a child who yet remained asymptomatic.5 Thus, this first and so far unique case shows that infection of children is possible although apparently extremely rare; furthermore, it was not followed by the development of the respiratory disease at the time of writing.
T30 4475-4579 Sentence denotes Persistence of maternal protective immunity extending to the entire pediatric age appears very unlikely.
T31 4580-4645 Sentence denotes No other positively protective effect may be easily hypothesized.
T32 4646-4709 Sentence denotes Are children cross-protected by having met other Coronaviruses?
T33 4710-4912 Sentence denotes Coronaviruses (CoVs) is one of the common viruses that invade the lungs as rhinoviruses, respiratory syncytial virus (RSV), and influenza, which all have an RNA genome and are very frequent in children.
T34 4913-5021 Sentence denotes Innate immune evasion links to the innate immune responses elicited by respiratory and other (RNA) viruses.6
T35 5022-5199 Sentence denotes One explanation could be that pneumonia results from virus-induced immune response causing destruction of pulmonary tissue.7 Such mechanisms could be less effective in children.
T36 5200-5534 Sentence denotes As a bottom-line message, although we do not know how massively 2019-CoV will spread and affect the population worldwide, we may try to reassure the population about the real risk represented by this novel ordeal: their children are apparently at a minimal risk to develop this new disease, and at virtually no risk of a fatal course.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 253-272 Phenotype denotes respiratory illness http://purl.obolibrary.org/obo/HP_0002086
T2 4171-4180 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T3 5052-5061 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090