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PMC:7036342 / 6170-7125 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
120 320-326 Gene denotes ORF1ab Gene:43740578
121 367-372 Gene denotes ORF3a Gene:43740569
122 343-344 Gene denotes S Gene:43740568
123 30-37 Species denotes BetaCoV Tax:694002
124 572-579 Species denotes BetaCoV Tax:694002
125 802-812 Species denotes SARS-CoV-2 Tax:2697049

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T98 145-151 SO:0001505 denotes genome
T97 249-254 SO:0000704 denotes genes
T96 273-278 SO:0000704 denotes genes
T95 345-349 SO:0000704 denotes gene
T94 395-399 SO:0000704 denotes gene
T93 802-812 SP_7 denotes SARS-CoV-2
T92 856-862 SO:0001026 denotes genome
T91 883-893 SO:0000853 denotes homologous

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T38 145-151 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T39 345-349 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T40 395-399 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T41 451-462 Body_part denotes amino acids http://purl.org/sig/ont/fma/fma82739
T42 685-689 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T43 856-862 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T39 802-810 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T40 802-806 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T61 249-254 http://purl.obolibrary.org/obo/OGG_0000000002 denotes genes
T62 273-278 http://purl.obolibrary.org/obo/OGG_0000000002 denotes genes
T63 345-349 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T64 395-399 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T65 685-689 http://purl.obolibrary.org/obo/GO_0005623 denotes cell

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T31 451-462 Chemical denotes amino acids http://purl.obolibrary.org/obo/CHEBI_33709
T32 451-456 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T33 457-462 Chemical denotes acids http://purl.obolibrary.org/obo/CHEBI_37527

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T33 0-77 Sentence denotes Next-generation sequencing of BetaCoV/Korea/SNU01/2020 (GenBank accession no.
T34 78-182 Sentence denotes MT039890) revealed 9 mutations compared to the NC_045512 reference genome isolated from Wuhan (Table 1).
T35 183-291 Sentence denotes Most of the mutations in our isolate consisted of 70% alternative genes and 30% reference genes (NC_045512).
T36 292-400 Sentence denotes Five variants were found in ORF1ab, one variant in S gene, two variants in ORF3a, and one variant in E gene.
T37 401-463 Sentence denotes Of the nine mutations, six also showed changes in amino acids.
T38 464-655 Sentence denotes When comparing our isolate with the one isolated from the Korea Centers for Disease Control and Prevention (BetaCoV/Korea/KCDC03/2020), 12 variants including the above 9 mutations were found.
T39 656-841 Sentence denotes These mutations may occur by cell culture-adaptation in that our culture isolate was obtained after first blind passage, or by micro-evolution of SARS-CoV-2 before acquisition in Wuhan.
T40 842-955 Sentence denotes Because those genome sequences are quite homologous each other, it is difficult to validate these two hypothesis.