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PMC:7036338 / 803-12066 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
60 4027-4033 Chemical denotes oxygen MESH:D010100
24 81-128 Species denotes severe acute respiratory syndrome coronavirus 2 Tax:2697049
25 130-140 Species denotes SARS-CoV-2 Tax:2697049
26 310-318 Species denotes patients Tax:9606
27 397-407 Species denotes SARS-CoV-2 Tax:2697049
28 714-719 Species denotes human Tax:9606
29 778-786 Species denotes patients Tax:9606
30 25-50 Disease denotes novel coronavirus disease MESH:C000657245
31 52-60 Disease denotes COVID-19 MESH:C000657245
36 904-912 Species denotes patients Tax:9606
37 1362-1372 Species denotes SARS-CoV-2 Tax:2697049
38 1486-1496 Species denotes SARS-CoV-2 Tax:2697049
39 946-966 Disease denotes SARS-CoV-2 infection MESH:C000657245
54 1707-1712 Species denotes woman Tax:9606
55 1852-1859 Species denotes patient Tax:9606
56 1917-1924 Species denotes Patient Tax:9606
57 2622-2632 Species denotes SARS-CoV-2 Tax:2697049
58 2859-2865 Chemical denotes oxygen MESH:D010100
59 3270-3276 Chemical denotes oxygen MESH:D010100
61 1757-1776 Disease denotes SARS-CoV-2 infected MESH:C000657245
62 2062-2067 Disease denotes fever MESH:D005334
63 2176-2181 Disease denotes fever MESH:D005334
64 2195-2202 Disease denotes myalgia MESH:D063806
65 2382-2402 Disease denotes respiratory symptoms MESH:D012818
66 2755-2766 Disease denotes sub-pleural MESH:D010995
67 2931-2936 Disease denotes cough MESH:D003371
78 4169-4176 Species denotes Patient Tax:9606
79 4358-4365 Species denotes patient Tax:9606
80 5041-5048 Species denotes patient Tax:9606
81 5112-5122 Species denotes SARS-CoV-2 Tax:2697049
82 5293-5300 Species denotes Patient Tax:9606
83 5424-5434 Species denotes SARS-CoV-2 Tax:2697049
84 4476-4487 Disease denotes sore throat MESH:D010608
85 4505-4512 Disease denotes myalgia MESH:D063806
86 4642-4662 Disease denotes SARS-CoV-2 infection MESH:C000657245
87 5555-5560 Disease denotes cough MESH:D003371
110 6213-6221 Species denotes patients Tax:9606
111 6333-6341 Species denotes patients Tax:9606
112 6382-6392 Species denotes SARS-CoV-2 Tax:2697049
113 6521-6526 Species denotes human Tax:9606
114 6531-6538 Species denotes Patient Tax:9606
115 7089-7096 Species denotes Patient Tax:9606
116 7717-7724 Species denotes patient Tax:9606
117 8030-8038 Species denotes MERS-CoV Tax:1335626
118 8294-8301 Species denotes patient Tax:9606
119 8387-8397 Species denotes SARS-CoV-2 Tax:2697049
120 6611-6617 Chemical denotes oxygen MESH:D010100
121 7630-7636 Chemical denotes oxygen MESH:D010100
122 6502-6517 Disease denotes virus infection MESH:D001102
123 6587-6606 Disease denotes shortness of breath MESH:D004417
124 6913-6931 Disease denotes SARS-CoV infection MESH:C000657245
125 7045-7050 Disease denotes fever MESH:D005334
126 7055-7062 Disease denotes myalgia MESH:D063806
127 7180-7185 Disease denotes cough MESH:D003371
128 7197-7216 Disease denotes shortness of breath MESH:D004417
129 7598-7603 Disease denotes cough MESH:D003371
130 7605-7624 Disease denotes shortness of breath MESH:D004417
131 8321-8330 Disease denotes infection MESH:D007239
139 8512-8519 Species denotes Patient Tax:9606
140 8747-8754 Species denotes patient Tax:9606
141 8824-8831 Species denotes patient Tax:9606
142 8956-8963 Species denotes patient Tax:9606
143 9311-9318 Species denotes patient Tax:9606
144 8851-8862 Disease denotes sore throat MESH:D010608
145 9344-9349 Disease denotes cough MESH:D003371
157 9490-9498 Species denotes patients Tax:9606
158 9547-9555 Species denotes patients Tax:9606
159 9672-9680 Species denotes patients Tax:9606
160 9954-9964 Species denotes SARS-CoV-2 Tax:2697049
161 10038-10046 Species denotes patients Tax:9606
162 10712-10720 Species denotes patients Tax:9606
163 10814-10822 Species denotes patients Tax:9606
164 9635-9654 Chemical denotes Lopinavir/ritonavir MESH:C558899
165 9837-9856 Chemical denotes Lopinavir/ritonavir MESH:C558899
166 9878-9886 Disease denotes diarrhea MESH:D003967
167 10692-10711 Disease denotes SARS-CoV-2 infected MESH:C000657245
170 10944-10954 Species denotes SARS-CoV-2 Tax:2697049
171 11010-11018 Species denotes patients Tax:9606
173 11254-11262 Species denotes patients Tax:9606

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 714-724 Body_part denotes human body http://purl.org/sig/ont/fma/fma305853
T2 797-820 Body_part denotes Upper respiratory tract http://purl.org/sig/ont/fma/fma45661
T3 822-825 Body_part denotes URT http://purl.org/sig/ont/fma/fma45661
T4 859-862 Body_part denotes LRT http://purl.org/sig/ont/fma/fma273029
T5 1130-1133 Body_part denotes URT http://purl.org/sig/ont/fma/fma45661
T6 1148-1154 Body_part denotes sputum http://purl.org/sig/ont/fma/fma312401
T7 1167-1170 Body_part denotes LRT http://purl.org/sig/ont/fma/fma273029
T8 1182-1187 Body_part denotes Serum http://purl.org/sig/ont/fma/fma63083
T9 1189-1195 Body_part denotes plasma http://purl.org/sig/ont/fma/fma62970
T10 1197-1202 Body_part denotes urine http://purl.org/sig/ont/fma/fma12274
T11 1208-1213 Body_part denotes stool http://purl.org/sig/ont/fma/fma64183
T12 1467-1470 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T13 1954-1957 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T14 2309-2312 Body_part denotes URT http://purl.org/sig/ont/fma/fma45661
T15 2404-2407 Body_part denotes LRT http://purl.org/sig/ont/fma/fma273029
T16 2430-2436 Body_part denotes sputum http://purl.org/sig/ont/fma/fma312401
T17 2557-2562 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T18 2592-2595 Body_part denotes LRT http://purl.org/sig/ont/fma/fma273029
T19 2759-2773 Body_part denotes pleural spaces http://purl.org/sig/ont/fma/fma9740
T20 2829-2832 Body_part denotes LRT http://purl.org/sig/ont/fma/fma273029
T21 3099-3102 Body_part denotes URT http://purl.org/sig/ont/fma/fma45661
T22 3107-3110 Body_part denotes LRT http://purl.org/sig/ont/fma/fma273029
T23 3182-3185 Body_part denotes LRT http://purl.org/sig/ont/fma/fma273029
T24 3205-3208 Body_part denotes URT http://purl.org/sig/ont/fma/fma45661
T25 3454-3459 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T26 3549-3552 Body_part denotes LRT http://purl.org/sig/ont/fma/fma273029
T27 3575-3578 Body_part denotes URT http://purl.org/sig/ont/fma/fma45661
T28 3677-3682 Body_part denotes stool http://purl.org/sig/ont/fma/fma64183
T29 3728-3732 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T30 3765-3770 Body_part denotes urine http://purl.org/sig/ont/fma/fma12274
T31 3775-3780 Body_part denotes stool http://purl.org/sig/ont/fma/fma64183
T32 3882-3887 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T33 4481-4487 Body_part denotes throat http://purl.org/sig/ont/fma/fma228738
T34 4840-4845 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T35 4976-4979 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T36 5144-5147 Body_part denotes URT http://purl.org/sig/ont/fma/fma45661
T37 5152-5155 Body_part denotes LRT http://purl.org/sig/ont/fma/fma273029
T38 5244-5247 Body_part denotes URT http://purl.org/sig/ont/fma/fma45661
T39 5274-5277 Body_part denotes LRT http://purl.org/sig/ont/fma/fma273029
T40 5329-5332 Body_part denotes URT http://purl.org/sig/ont/fma/fma45661
T41 5361-5364 Body_part denotes LRT http://purl.org/sig/ont/fma/fma273029
T42 5498-5501 Body_part denotes URT http://purl.org/sig/ont/fma/fma45661
T43 5506-5509 Body_part denotes LRT http://purl.org/sig/ont/fma/fma273029
T44 5579-5585 Body_part denotes sputum http://purl.org/sig/ont/fma/fma312401
T45 5587-5590 Body_part denotes LRT http://purl.org/sig/ont/fma/fma273029
T46 5644-5647 Body_part denotes URT http://purl.org/sig/ont/fma/fma45661
T47 5667-5670 Body_part denotes LRT http://purl.org/sig/ont/fma/fma273029
T48 5846-5849 Body_part denotes URT http://purl.org/sig/ont/fma/fma45661
T49 5928-5932 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T50 5943-5949 Body_part denotes plasma http://purl.org/sig/ont/fma/fma62970
T51 5954-5959 Body_part denotes stool http://purl.org/sig/ont/fma/fma64183
T52 7539-7542 Body_part denotes LRT http://purl.org/sig/ont/fma/fma273029
T53 7584-7587 Body_part denotes LRT http://purl.org/sig/ont/fma/fma273029
T54 7750-7753 Body_part denotes LRT http://purl.org/sig/ont/fma/fma273029
T55 7846-7849 Body_part denotes LRT http://purl.org/sig/ont/fma/fma273029
T56 7863-7868 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T57 7940-7943 Body_part denotes URT http://purl.org/sig/ont/fma/fma45661
T58 7948-7951 Body_part denotes LRT http://purl.org/sig/ont/fma/fma273029
T59 8082-8085 Body_part denotes LRT http://purl.org/sig/ont/fma/fma273029
T60 8131-8134 Body_part denotes URT http://purl.org/sig/ont/fma/fma45661
T61 8139-8142 Body_part denotes LRT http://purl.org/sig/ont/fma/fma273029
T62 8215-8219 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T63 8237-8242 Body_part denotes urine http://purl.org/sig/ont/fma/fma12274
T64 8247-8252 Body_part denotes stool http://purl.org/sig/ont/fma/fma64183
T65 8484-8489 Body_part denotes urine http://purl.org/sig/ont/fma/fma12274
T66 8494-8499 Body_part denotes stool http://purl.org/sig/ont/fma/fma64183
T67 8856-8862 Body_part denotes throat http://purl.org/sig/ont/fma/fma228738
T68 9059-9062 Body_part denotes URT http://purl.org/sig/ont/fma/fma45661
T69 9067-9070 Body_part denotes LRT http://purl.org/sig/ont/fma/fma273029
T70 9148-9151 Body_part denotes URT http://purl.org/sig/ont/fma/fma45661
T71 9196-9199 Body_part denotes LRT http://purl.org/sig/ont/fma/fma273029
T72 9257-9260 Body_part denotes URT http://purl.org/sig/ont/fma/fma45661
T73 9387-9393 Body_part denotes sputum http://purl.org/sig/ont/fma/fma312401
T74 9900-9922 Body_part denotes gastrointestinal tract http://purl.org/sig/ont/fma/fma71132
T75 10973-10976 Body_part denotes URT http://purl.org/sig/ont/fma/fma45661
T76 10981-10984 Body_part denotes LRT http://purl.org/sig/ont/fma/fma273029

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 797-820 Body_part denotes Upper respiratory tract http://purl.obolibrary.org/obo/UBERON_0001557
T2 803-820 Body_part denotes respiratory tract http://purl.obolibrary.org/obo/UBERON_0000065
T3 822-825 Body_part denotes URT http://purl.obolibrary.org/obo/UBERON_0001557
T4 1122-1126 Body_part denotes tube http://purl.obolibrary.org/obo/UBERON_0000025
T5 1130-1133 Body_part denotes URT http://purl.obolibrary.org/obo/UBERON_0001557
T6 1148-1154 Body_part denotes sputum http://purl.obolibrary.org/obo/UBERON_0007311
T7 1182-1187 Body_part denotes Serum http://purl.obolibrary.org/obo/UBERON_0001977
T8 1197-1202 Body_part denotes urine http://purl.obolibrary.org/obo/UBERON_0001088
T9 1208-1213 Body_part denotes stool http://purl.obolibrary.org/obo/UBERON_0001988
T10 2309-2312 Body_part denotes URT http://purl.obolibrary.org/obo/UBERON_0001557
T11 2430-2436 Body_part denotes sputum http://purl.obolibrary.org/obo/UBERON_0007311
T12 2557-2562 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T13 3099-3102 Body_part denotes URT http://purl.obolibrary.org/obo/UBERON_0001557
T14 3205-3208 Body_part denotes URT http://purl.obolibrary.org/obo/UBERON_0001557
T15 3454-3459 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T16 3575-3578 Body_part denotes URT http://purl.obolibrary.org/obo/UBERON_0001557
T17 3677-3682 Body_part denotes stool http://purl.obolibrary.org/obo/UBERON_0001988
T18 3765-3770 Body_part denotes urine http://purl.obolibrary.org/obo/UBERON_0001088
T19 3775-3780 Body_part denotes stool http://purl.obolibrary.org/obo/UBERON_0001988
T20 3882-3887 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T21 4481-4487 Body_part denotes throat http://purl.obolibrary.org/obo/UBERON_0000341
T22 4840-4845 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T23 5144-5147 Body_part denotes URT http://purl.obolibrary.org/obo/UBERON_0001557
T24 5244-5247 Body_part denotes URT http://purl.obolibrary.org/obo/UBERON_0001557
T25 5329-5332 Body_part denotes URT http://purl.obolibrary.org/obo/UBERON_0001557
T26 5498-5501 Body_part denotes URT http://purl.obolibrary.org/obo/UBERON_0001557
T27 5579-5585 Body_part denotes sputum http://purl.obolibrary.org/obo/UBERON_0007311
T28 5644-5647 Body_part denotes URT http://purl.obolibrary.org/obo/UBERON_0001557
T29 5846-5849 Body_part denotes URT http://purl.obolibrary.org/obo/UBERON_0001557
T30 5954-5959 Body_part denotes stool http://purl.obolibrary.org/obo/UBERON_0001988
T31 7863-7868 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T32 7940-7943 Body_part denotes URT http://purl.obolibrary.org/obo/UBERON_0001557
T33 8131-8134 Body_part denotes URT http://purl.obolibrary.org/obo/UBERON_0001557
T34 8237-8242 Body_part denotes urine http://purl.obolibrary.org/obo/UBERON_0001088
T35 8247-8252 Body_part denotes stool http://purl.obolibrary.org/obo/UBERON_0001988
T36 8484-8489 Body_part denotes urine http://purl.obolibrary.org/obo/UBERON_0001088
T37 8494-8499 Body_part denotes stool http://purl.obolibrary.org/obo/UBERON_0001988
T38 8856-8862 Body_part denotes throat http://purl.obolibrary.org/obo/UBERON_0000341
T39 9059-9062 Body_part denotes URT http://purl.obolibrary.org/obo/UBERON_0001557
T40 9148-9151 Body_part denotes URT http://purl.obolibrary.org/obo/UBERON_0001557
T41 9257-9260 Body_part denotes URT http://purl.obolibrary.org/obo/UBERON_0001557
T42 9387-9393 Body_part denotes sputum http://purl.obolibrary.org/obo/UBERON_0007311
T43 10973-10976 Body_part denotes URT http://purl.obolibrary.org/obo/UBERON_0001557

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T9 52-60 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T10 81-128 Disease denotes severe acute respiratory syndrome coronavirus 2 http://purl.obolibrary.org/obo/MONDO_0100096
T11 81-114 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T12 130-138 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T13 397-405 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T14 946-954 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T15 957-966 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T16 1362-1370 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T17 1486-1494 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T18 1757-1765 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T19 2622-2630 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T20 3671-3682 Disease denotes loose stool http://purl.obolibrary.org/obo/MONDO_0001673
T21 4413-4415 Disease denotes he http://purl.obolibrary.org/obo/MONDO_0017319
T22 4476-4487 Disease denotes sore throat http://purl.obolibrary.org/obo/MONDO_0002258
T23 4642-4650 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T24 4653-4662 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T25 5112-5120 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T26 5424-5432 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T27 5538-5540 Disease denotes he http://purl.obolibrary.org/obo/MONDO_0017319
T28 6094-6096 Disease denotes he http://purl.obolibrary.org/obo/MONDO_0017319
T29 6382-6390 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T30 6502-6517 Disease denotes virus infection http://purl.obolibrary.org/obo/MONDO_0005108
T31 6508-6517 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T32 6913-6931 Disease denotes SARS-CoV infection http://purl.obolibrary.org/obo/MONDO_0005091
T33 6922-6931 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T34 8321-8330 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T35 8387-8395 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T36 8851-8862 Disease denotes sore throat http://purl.obolibrary.org/obo/MONDO_0002258
T37 9878-9886 Disease denotes diarrhea http://purl.obolibrary.org/obo/MONDO_0001673
T38 9954-9962 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T39 10441-10451 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T40 10692-10700 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T41 10944-10952 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T2 176-179 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T3 371-383 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T4 417-418 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T5 621-626 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T6 705-710 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T7 714-719 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T8 1026-1031 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T9 1122-1126 http://purl.obolibrary.org/obo/UBERON_0000025 denotes tube
T10 1189-1195 http://purl.obolibrary.org/obo/UBERON_0001969 denotes plasma
T11 1604-1609 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T12 1685-1686 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T13 1687-1689 http://purl.obolibrary.org/obo/CLO_0001000 denotes 35
T14 1826-1827 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T15 2246-2248 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T16 2285-2290 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T17 2456-2462 http://purl.obolibrary.org/obo/UBERON_0001005 denotes airway
T18 2557-2562 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T19 3446-3447 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T20 3454-3459 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T21 3728-3732 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T22 4183-4184 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T23 4288-4290 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T24 4332-4333 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T25 4599-4605 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T26 4840-4845 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T27 5062-5070 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test was
T28 5378-5386 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test was
T29 5448-5449 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T30 5621-5622 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T31 5812-5817 http://purl.obolibrary.org/obo/OGG_0000000002 denotes genes
T32 5928-5932 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T33 5943-5949 http://purl.obolibrary.org/obo/UBERON_0001969 denotes plasma
T34 5978-5983 http://purl.obolibrary.org/obo/OGG_0000000002 denotes genes
T35 6119-6121 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T36 6502-6507 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T37 6521-6526 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T38 7010-7013 http://purl.obolibrary.org/obo/CLO_0001000 denotes 3–5
T39 7359-7360 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T40 7515-7520 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T41 7768-7773 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T42 7863-7868 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T43 8073-8078 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T44 8215-8219 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T45 8769-8772 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T46 8822-8823 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T47 8954-8955 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T48 9027-9032 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T49 9215-9220 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T50 9411-9418 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T51 9900-9922 http://purl.obolibrary.org/obo/UBERON_0005409 denotes gastrointestinal tract
T52 10063-10068 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T53 10103-10108 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T54 10199-10204 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T55 10287-10292 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T56 10293-10296 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T57 10425-10430 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T58 10512-10517 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T59 10559-10564 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T60 10584-10585 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T61 10892-10897 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T62 10924-10925 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T63 11163-11168 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 2859-2865 Chemical denotes oxygen http://purl.obolibrary.org/obo/CHEBI_25805
T2 3270-3276 Chemical denotes oxygen http://purl.obolibrary.org/obo/CHEBI_25805
T3 4027-4033 Chemical denotes oxygen http://purl.obolibrary.org/obo/CHEBI_25805
T4 4554-4590 Chemical denotes nonsteroidal anti-inflammatory agent http://purl.obolibrary.org/obo/CHEBI_35475
T5 4567-4590 Chemical denotes anti-inflammatory agent http://purl.obolibrary.org/obo/CHEBI_67079
T6 6611-6617 Chemical denotes oxygen http://purl.obolibrary.org/obo/CHEBI_25805
T7 7428-7437 Chemical denotes antiviral http://purl.obolibrary.org/obo/CHEBI_22587
T8 7630-7636 Chemical denotes oxygen http://purl.obolibrary.org/obo/CHEBI_25805
T9 9635-9644 Chemical denotes Lopinavir http://purl.obolibrary.org/obo/CHEBI_31781
T10 9645-9654 Chemical denotes ritonavir http://purl.obolibrary.org/obo/CHEBI_45409
T11 9837-9846 Chemical denotes Lopinavir http://purl.obolibrary.org/obo/CHEBI_31781
T12 9847-9856 Chemical denotes ritonavir http://purl.obolibrary.org/obo/CHEBI_45409
T13 9968-9972 Chemical denotes drug http://purl.obolibrary.org/obo/CHEBI_23888

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 689-697 http://purl.obolibrary.org/obo/GO_0007610 denotes behavior
T2 1293-1306 http://purl.obolibrary.org/obo/GO_0003968 denotes transcriptase
T3 1293-1306 http://purl.obolibrary.org/obo/GO_0003899 denotes transcriptase
T4 10132-10142 http://purl.obolibrary.org/obo/GO_0046903 denotes secretions

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T8 0-353 Sentence denotes As of February 2020, the novel coronavirus disease (COVID-19) outbreak caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) started in China in December 2019 has been spreading in many countries over the world.123 The numbers of confirmed cases are increasing over 70,000 including 31 Korean patients as of third week of February 2020.
T9 354-670 Sentence denotes The World Health Organization declared the SARS-CoV-2 outbreak a public health emergency of international concern on January 30, 2020.4 While the information on epidemiologic investigation and clinical manifestation are being accumulated, viral kinetics of the novel virus have not been systematically evaluated yet.
T10 671-796 Sentence denotes To understand the behavior of the virus in human body, we present the viral load kinetics of the first two patients in Korea.
T11 797-1044 Sentence denotes Upper respiratory tract (URT) and lower respiratory specimen (LRT) specimens were collected from confirmed patients every day after the diagnosis of SARS-CoV-2 infection and sent to Korea Center for Disease Control for follow-up tests and culture.
T12 1045-1274 Sentence denotes Nasopharyngeal and oropharyngeal swabs were collected and placed in the same tube as URT specimen, and sputum was used as LRT specimen.5 Serum, plasma, urine, and stool samples were also collected sequentially during the illness.
T13 1275-1497 Sentence denotes Real-time reverse transcriptase polymerase chain reaction (rRT-PCR) was used to detect SARS-CoV-2 using the published sequences.6 The cycle threshold (Ct) values of rRT-PCR was converted into RNA copy number of SARS-CoV-2.
T14 1498-1567 Sentence denotes The detection limit of quantitative PCR reaction was 2,690 copies/mL.
T15 1568-1684 Sentence denotes Detailed methods and values for the tests are presented in the Supplementary Data 1 and Supplementary Tables 1 to 3.
T16 1685-1791 Sentence denotes A 35-year-old Chinese woman from Wuhan, China was confirmed to be first SARS-CoV-2 infected case in Korea.
T17 1792-2010 Sentence denotes The detailed exposure history and a clinical course of this patient is described in previous report.7 Viral load kinetics of Patient 1 is shown in Fig. 1A (viral RNA copies) and Supplementary Fig. 1 (reverse Ct value).
T18 2011-2121 Sentence denotes Briefly, she was quarantined at the airport due to fever (38.3°C) at the entry inspection on January 19, 2020.
T19 2122-2280 Sentence denotes She had no significant exposure history and developed fever, chills, and myalgia one day before the entry to Korea (January 18, 2020, day 1 of symptom onset).
T20 2281-2349 Sentence denotes The virus was detected from URT specimens on day 2 of symptom onset.
T21 2350-2507 Sentence denotes As she did not have significant respiratory symptoms, LRT specimen (spontaneous sputum) was obtained with airway clearance techniques of percussion on day 3.
T22 2508-2633 Sentence denotes Although any infiltration was not noticed on her chest X-ray (CXR) on the same day, LRT specimen was positive for SARS-CoV-2.
T23 2634-2905 Sentence denotes On day 4, high resolution computed tomography (HRCT) was taken and multiple ground-glass opacities were observed in both sub-pleural spaces.7 On day 5, the viral load was increased from day 3 in LRT specimen and she required oxygen supplement via nasal cannula (3 L/min).
T24 2906-3002 Sentence denotes She eventually developed cough on day 7, and infiltration was observed on CXR from the next day.
T25 3003-3220 Sentence denotes However, it appeared that the viral loads already started to decrease from around day 7 in both URT and LRT specimens. rRT-PCR continued to be positive at low level until day 13 (LRT specimens) and 14 (URT specimens).
T26 3221-3373 Sentence denotes On day 12, her CXR was worsened with increase in oxygen requirement up to 10 L/min, while the viral loads dropped significantly from the initial values.
T27 3374-3535 Sentence denotes Therefore, by the time when the significant infiltration was visible on a plain chest radiography, the viral load might be already on its lower end of detection.
T28 3536-3657 Sentence denotes From day 14 (LRT specimen) and day 15 (URT specimen), rRT-PCR became undetectable for two consecutive days, respectively.
T29 3658-3704 Sentence denotes She had mild loose stool from day 4 to day 19.
T30 3705-3872 Sentence denotes Although RdRp and/or E gene were detected occasionally from urine and stool specimens collected from day 5 to 12, none of specimen satisfied conditions for positivity.
T31 3873-4012 Sentence denotes Only one serum sample collected on day 8 showed positive rRT-PCR result, but the Ct value was adjacent to the cut-off value for positivity.
T32 4013-4168 Sentence denotes Her symptoms, oxygen requirement, and CXR findings significantly improved from day 17 and she was discharged on day 20 of symptom onset (February 6, 2019).
T33 4169-4297 Sentence denotes Patient 2 was a 55-year-old Korean man, who had been working at Wuhan, China, arrived in Korea via Shanghai on January 22, 2020.
T34 4298-4403 Sentence denotes The detailed exposure history and a clinical course of this patient is described in Supplementary Data 1.
T35 4404-4591 Sentence denotes Briefly, he did not have any significant exposure history and developed sore throat and intermittent myalgia since January 10 which was controlled by nonsteroidal anti-inflammatory agent.
T36 4592-4705 Sentence denotes He was tested on January 23, 2020, confirmed with SARS-CoV-2 infection next day and hospitalized on the same day.
T37 4706-4797 Sentence denotes Therefore, his admission day (January 24) was considered to be the day 15 of symptom onset.
T38 4798-4923 Sentence denotes His CXR on day 15 showed infiltration and chest HRCT on day 16 showed bilateral ground-glass opacity (Supplementary Fig. 3A).
T39 4924-5032 Sentence denotes The viral load kinetics are shown in Fig. 1B (viral RNA copies) and Supplementary Fig. 2 (reverse Ct value).
T40 5033-5166 Sentence denotes In this patient, the initial test was performed on day 14 of symptom onset and SARS-CoV-2 was detected in both URT and LRT specimens.
T41 5167-5423 Sentence denotes However, the initial viral loads were relatively lower (49,047 copies/mL for URT and 391,243 copies/mL for LRT) than those of Patient 1 (46,971,053 copies/mL for URT and 9,171,220 copies/mL for LRT) in whom the test was performed on day 2 of symptom onset.
T42 5424-5534 Sentence denotes SARS-CoV-2 was detected a few more times during hospitalization from both URT and LRT specimens at low levels.
T43 5535-5633 Sentence denotes As he had just mild cough with little or no sputum, LRT specimens were available only a few times.
T44 5634-5749 Sentence denotes From D18 (URT specimen) and D20 (LRT specimen), rRT-PCR became undetectable for two consecutive days, respectively.
T45 5750-5933 Sentence denotes On day 25, RdRp (Ct value of 36.69) and E (Ct value of 33.18) genes was detected again from the URT sample of day 25, it was interpreted as negative due to high Ct value of RdRp gene.
T46 5934-6060 Sentence denotes From his plasma and stool specimens, only E genes were once detected on day 17 and it was also interpreted as negative result.
T47 6061-6141 Sentence denotes His CXR improved from day 19 and he was discharged on day 27 (February 5, 2020).
T48 6142-6278 Sentence denotes This study presents the viral load kinetics of the first two confirmed patients in Korea in whom distinct viral load kinetics are shown.
T49 6279-6527 Sentence denotes Although the viral load and CXR findings in these two patients may not represent the whole spectrum of SARS-CoV-2 illness, our report will provide many important findings and opportunity to understand this newly discovered virus infection in human.
T50 6528-6701 Sentence denotes In Patient 1, we observed one example of moderate disease (shortness of breath and oxygen requirement up to 10 L/min) with corresponding radiograph findings and viral loads.
T51 6702-6834 Sentence denotes We could observe her clinical presentation from day 2 of symptom onset and the whole clinical picture was captured with viral loads.
T52 6835-6898 Sentence denotes There are several important implications from this observation.
T53 6899-7159 Sentence denotes First, unlike SARS-CoV infection,8 we found that viral load was highest during the early phase of the illness (3–5 days from first symptom onset, fever and myalgia were the only symptoms in Patient 1) and continued to decrease until the end of the second week.
T54 7160-7344 Sentence denotes While she developed cough as well as shortness of breath and infiltration appeared on CXR at the end of first week of illness, the viral load already started to decrease at this phase.
T55 7345-7502 Sentence denotes This may have a very important implication to determine the optimal time point for antiviral treatment intervention to prevent progression to severe disease.
T56 7503-7681 Sentence denotes Second, the virus was detected from LRT specimens even before the development of LRT symptoms (cough, shortness of breath, and oxygen requirement) or visible infiltration on CXR.
T57 7682-7888 Sentence denotes This may suggest that although the patient does not complain of any LRT symptoms, the virus is already there and causing insidious pathology, ultimately leading to LRT symptoms and chest infiltration later.
T58 7889-8012 Sentence denotes However, the viral load starts to decrease in both URT and LRT specimens at the same time, which may puzzle the clinicians.
T59 8013-8153 Sentence denotes Third, unlike in MERS-CoV revealing higher concentration of virus in LRT specimens,9 viral loads were similar in both URT and LRT specimens.
T60 8154-8331 Sentence denotes Fourth, low concentration of genetic materials, especially E gene, was detected in urine and stool from the end of the first week until the patient recovered from the infection.
T61 8332-8409 Sentence denotes However, rRT-PCR results did not meet the criteria for SARS-CoV-2 positivity.
T62 8410-8508 Sentence denotes Further studies need to be performed in non-respiratory specimens such as urine and stool samples.
T63 8509-8618 Sentence denotes In Patient 2, we observed one example of mild disease with corresponding radiograph findings and viral loads.
T64 8619-8730 Sentence denotes This may represent many real-world mild cases who may present to medical facility late in their disease course.
T65 8731-8806 Sentence denotes Therefore, this patient's information has also some important implications.
T66 8807-8937 Sentence denotes First, even in a patient with mild disease (sore throat only), visible infiltration on CXR was observed at the end of second week.
T67 8938-9132 Sentence denotes Second, even in a patient with mild disease, if visible infiltration on CXR is observed, virus is still detected in both URT and LRT specimens even at the end of second week after symptom onset.
T68 9133-9270 Sentence denotes Viral loads of URT were similar with and sometimes higher than LRT specimens, and virus was detectable for longer period in URT specimen.
T69 9271-9419 Sentence denotes This could be also probably because the patient did not have significant cough and had little amount of spontaneous sputum insufficient for testing.
T70 9420-9461 Sentence denotes There are also limitations in our report.
T71 9462-9626 Sentence denotes Since we only presented two patients (mild and moderate), the information from these patients may not be generalizable to many other cases, especially severe cases.
T72 9627-9803 Sentence denotes Second, Lopinavir/ritonavir was used in both patients on day 5 and day 17 from symptom onset, but its role cannot be determined in viral load reduction or clinical improvement.
T73 9804-9985 Sentence denotes In addition, since they received Lopinavir/ritonavir which can also cause diarrhea, how much of gastrointestinal tract symptom was in fact related to SARS-CoV-2 or drug side effect.
T74 9986-10143 Sentence denotes Third, we cannot estimate the time point when these patients were exposed to virus and when they started to shed the virus from their respiratory secretions.
T75 10144-10273 Sentence denotes These data are also urgently needed to understand this virus better and to implement the control strategies as early as possible.
T76 10274-10379 Sentence denotes Finally, the virus has not been readily cultured from these specimens, yet, although we are still trying.
T77 10380-10535 Sentence denotes It is not clear whether there was not viable virus (possibly infectious) or we were not successful to culture this newly discovered virus in the beginning.
T78 10536-10637 Sentence denotes Therefore, knowing the virus load that can give a positive culture result is important in the future.
T79 10638-10744 Sentence denotes There is scarce information on viral load kinetics in SARS-CoV-2 infected patients throughout the illness.
T80 10745-10898 Sentence denotes Therefore, although our report is based on observation from only two patients, this will provide valuable insight to understand the nature of this virus.
T81 10899-11038 Sentence denotes In conclusion, we report a unique pattern of SARS-CoV-2 viral kinetics in URT and LRT specimens from first two patients diagnosed in Korea.
T82 11039-11169 Sentence denotes While two cases were different in disease course, these data will provide valuable insight to understand the nature of this virus.
T83 11171-11187 Sentence denotes Ethics statement
T84 11188-11263 Sentence denotes The clinical data and images are presented under agreement of the patients.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 2062-2067 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T2 2176-2181 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T3 2183-2189 Phenotype denotes chills http://purl.obolibrary.org/obo/HP_0025143
T4 2195-2202 Phenotype denotes myalgia http://purl.obolibrary.org/obo/HP_0003326
T5 2931-2936 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T6 4476-4487 Phenotype denotes sore throat http://purl.obolibrary.org/obo/HP_0033050
T7 4505-4512 Phenotype denotes myalgia http://purl.obolibrary.org/obo/HP_0003326
T8 5555-5560 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T9 6587-6606 Phenotype denotes shortness of breath http://purl.obolibrary.org/obo/HP_0002098
T10 7045-7050 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T11 7055-7062 Phenotype denotes myalgia http://purl.obolibrary.org/obo/HP_0003326
T12 7180-7185 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T13 7197-7216 Phenotype denotes shortness of breath http://purl.obolibrary.org/obo/HP_0002098
T14 7598-7603 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T15 7605-7624 Phenotype denotes shortness of breath http://purl.obolibrary.org/obo/HP_0002098
T16 8851-8862 Phenotype denotes sore throat http://purl.obolibrary.org/obo/HP_0033050
T17 9344-9349 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T18 9878-9886 Phenotype denotes diarrhea http://purl.obolibrary.org/obo/HP_0002014