PMC:7033720 / 6880-7091 JSONTXT

{"project":"LitCovid-PubTator","denotations":[{"id":"86","span":{"begin":181,"end":184},"obj":"Gene"}],"attributes":[{"id":"A86","pred":"tao:has_database_id","subj":"86","obj":"Gene:6697"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"Phylogenetic trees (both amino acid and nucleotide alignment) were reconstructed using the maximum likelihood method in PhyML 3.0 [7], employing a best fit substitution model and a SPR branch swapping algorithm."}

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T40","span":{"begin":25,"end":35},"obj":"Body_part"},{"id":"T41","span":{"begin":40,"end":50},"obj":"Body_part"}],"attributes":[{"id":"A40","pred":"fma_id","subj":"T40","obj":"http://purl.org/sig/ont/fma/fma82739"},{"id":"A41","pred":"fma_id","subj":"T41","obj":"http://purl.org/sig/ont/fma/fma82740"}],"text":"Phylogenetic trees (both amino acid and nucleotide alignment) were reconstructed using the maximum likelihood method in PhyML 3.0 [7], employing a best fit substitution model and a SPR branch swapping algorithm."}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T50","span":{"begin":145,"end":146},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T51","span":{"begin":179,"end":180},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"}],"text":"Phylogenetic trees (both amino acid and nucleotide alignment) were reconstructed using the maximum likelihood method in PhyML 3.0 [7], employing a best fit substitution model and a SPR branch swapping algorithm."}

{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T11","span":{"begin":25,"end":35},"obj":"Chemical"},{"id":"T12","span":{"begin":25,"end":30},"obj":"Chemical"},{"id":"T13","span":{"begin":31,"end":35},"obj":"Chemical"},{"id":"T14","span":{"begin":40,"end":50},"obj":"Chemical"}],"attributes":[{"id":"A11","pred":"chebi_id","subj":"T11","obj":"http://purl.obolibrary.org/obo/CHEBI_33709"},{"id":"A12","pred":"chebi_id","subj":"T12","obj":"http://purl.obolibrary.org/obo/CHEBI_46882"},{"id":"A13","pred":"chebi_id","subj":"T13","obj":"http://purl.obolibrary.org/obo/CHEBI_37527"},{"id":"A14","pred":"chebi_id","subj":"T14","obj":"http://purl.obolibrary.org/obo/CHEBI_36976"}],"text":"Phylogenetic trees (both amino acid and nucleotide alignment) were reconstructed using the maximum likelihood method in PhyML 3.0 [7], employing a best fit substitution model and a SPR branch swapping algorithm."}

{"project":"LitCovid-sentences","denotations":[{"id":"T63","span":{"begin":0,"end":211},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Phylogenetic trees (both amino acid and nucleotide alignment) were reconstructed using the maximum likelihood method in PhyML 3.0 [7], employing a best fit substitution model and a SPR branch swapping algorithm."}

{"project":"MyTest","denotations":[{"id":"32020836-20525638-27792007","span":{"begin":131,"end":132},"obj":"20525638"}],"namespaces":[{"prefix":"_base","uri":"https://www.uniprot.org/uniprot/testbase"},{"prefix":"UniProtKB","uri":"https://www.uniprot.org/uniprot/"},{"prefix":"uniprot","uri":"https://www.uniprot.org/uniprotkb/"}],"text":"Phylogenetic trees (both amino acid and nucleotide alignment) were reconstructed using the maximum likelihood method in PhyML 3.0 [7], employing a best fit substitution model and a SPR branch swapping algorithm."}

{"project":"2_test","denotations":[{"id":"32020836-20525638-27792007","span":{"begin":131,"end":132},"obj":"20525638"}],"text":"Phylogenetic trees (both amino acid and nucleotide alignment) were reconstructed using the maximum likelihood method in PhyML 3.0 [7], employing a best fit substitution model and a SPR branch swapping algorithm."}