PMC:7033720 / 5289-6148
Annnotations
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 81 | 230-235 | Species | denotes | Human | Tax:9606 |
| 82 | 293-298 | Species | denotes | human | Tax:9606 |
| 83 | 315-320 | Species | denotes | human | Tax:9606 |
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T34 | 299-305 | Body_part | denotes | genome | http://purl.org/sig/ont/fma/fma84116 |
| T35 | 505-512 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T38 | 66-67 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T39 | 230-235 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | Human |
| T40 | 293-298 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
| T41 | 315-320 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
| T42 | 373-374 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T43 | 385-390 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T44 | 448-450 | http://purl.obolibrary.org/obo/CLO_0002709 | denotes | db |
| T45 | 759-764 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T9 | 505-512 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T10 | 544-551 | Chemical | denotes | diamond | http://purl.obolibrary.org/obo/CHEBI_33417 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T51 | 0-130 | Sentence | denotes | To identify potential pathogens from the mNGS sequencing results, a pathogen discovery pipeline was carried out on sequenced data. |
| T52 | 131-229 | Sentence | denotes | Briefly, reads containing adaptor sequences and low-complex regions were removed from the dataset. |
| T53 | 230-306 | Sentence | denotes | Human reads were also removed by mapping against the reference human genome. |
| T54 | 307-586 | Sentence | denotes | All non-human and non-repeat sequence reads were then compared to a reference virus database (downloaded from https://ftp.ncbi.nih.gov/blast/db/ref_viruses_rep_genomes.tar.gz) and the non-redundant protein database (nr) using blastn and diamond blastx programs [4], respectively. |
| T55 | 587-772 | Sentence | denotes | Taxonomy lineage information was obtained for each blast hits by matching the accession number with the taxonomy database, which was subsequently used to identify reads of virus origin. |
| T56 | 773-859 | Sentence | denotes | Bacterial pathogen identification was carried out by using the Metaphlan2 program [5]. |
MyTest
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32020836-25402007-27792004 | 569-570 | 25402007 | denotes | 4 |
| 32020836-26418763-27792005 | 856-857 | 26418763 | denotes | 5 |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32020836-25402007-27792004 | 569-570 | 25402007 | denotes | 4 |
| 32020836-26418763-27792005 | 856-857 | 26418763 | denotes | 5 |