PMC:7033720 / 3598-4574
Annnotations
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 68 | 68-76 | Species | denotes | patients | Tax:9606 |
| 69 | 90-99 | Disease | denotes | pneumonia | MESH:D011014 |
| 72 | 618-627 | Species | denotes | 2019-nCoV | Tax:2697049 |
| 73 | 660-663 | Species | denotes | CoV | Tax:11118 |
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T19 | 281-287 | Body_part | denotes | genome | http://purl.org/sig/ont/fma/fma84116 |
| T20 | 316-319 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T21 | 373-376 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T22 | 560-566 | Body_part | denotes | genome | http://purl.org/sig/ont/fma/fma84116 |
| T23 | 582-588 | Body_part | denotes | genome | http://purl.org/sig/ont/fma/fma84116 |
| T24 | 631-635 | Body_part | denotes | sole | http://purl.org/sig/ont/fma/fma25000 |
| T25 | 664-670 | Body_part | denotes | genome | http://purl.org/sig/ont/fma/fma84116 |
| T26 | 714-720 | Body_part | denotes | genome | http://purl.org/sig/ont/fma/fma84116 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T7 | 90-99 | Disease | denotes | pneumonia | http://purl.obolibrary.org/obo/MONDO_0005249 |
| T8 | 129-133 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T34 | 554-559 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T35 | 878-881 | http://purl.obolibrary.org/obo/CL_0000990 | denotes | CDC |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T6 | 90-99 | Phenotype | denotes | pneumonia | http://purl.obolibrary.org/obo/HP_0002090 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T29 | 0-18 | Sentence | denotes | Sequence of events |
| T30 | 19-36 | Sentence | denotes | 2nd January 2020. |
| T31 | 37-100 | Sentence | denotes | Obtained BALF samples from two patients with unusual pneumonia. |
| T32 | 101-118 | Sentence | denotes | 3rd January 2020. |
| T33 | 119-220 | Sentence | denotes | Performed SARS-specific RT-PCR assay, yielded partial RdRp fragment, and revealed potential pathogen. |
| T34 | 221-238 | Sentence | denotes | 4th January 2020. |
| T35 | 239-339 | Sentence | denotes | Extended RdRp fragments and obtained more genome fragments, and started mNGS RNA library preparation |
| T36 | 340-357 | Sentence | denotes | 5th January 2020. |
| T37 | 358-397 | Sentence | denotes | Completed mNGS RNA library preparation. |
| T38 | 398-415 | Sentence | denotes | 6th January 2020. |
| T39 | 416-458 | Sentence | denotes | Started mNGS sequencing on Miseq platform. |
| T40 | 459-476 | Sentence | denotes | 7th January 2020. |
| T41 | 477-685 | Sentence | denotes | Received sequencing data, started pathogen identification pipeline, obtained virus genome, corrected the genome end with mapping, identified 2019-nCoV as sole pathogen, and the final CoV genome was 29,881 nt. |
| T42 | 686-703 | Sentence | denotes | 8th January 2020. |
| T43 | 704-759 | Sentence | denotes | Performed genome comparisons and evolutionary analyses. |
| T44 | 760-976 | Sentence | denotes | Since 3rd January 2020, instant progress reports have been sent to Chinese Center for Disease Control and Prevention (CDC), keeping pace with every advancement we made in pathogen identification and characterization. |