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PMC:7033720 / 20484-21549 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
387 576-581 Species denotes prion Tax:36469
388 700-709 Species denotes 2019-nCoV Tax:2697049
389 759-762 Species denotes CoV Tax:11118
390 830-836 Species denotes humans Tax:9606
392 647-655 Disease denotes infected MESH:D007239
393 883-891 Disease denotes zoonotic MESH:D015047

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T97 391-404 Body_part denotes RNA molecules http://purl.org/sig/ont/fma/fma84126
T98 391-394 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T99 518-521 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T36 775-779 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T217 156-161 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T218 354-359 http://purl.obolibrary.org/obo/OGG_0000000002 denotes genes
T219 459-464 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T220 479-485 http://purl.obolibrary.org/obo/CLO_0001658 denotes active
T221 721-726 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T222 808-813 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T223 830-836 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T224 838-840 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T225 846-849 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T226 1016-1017 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T227 1023-1028 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T67 395-404 Chemical denotes molecules http://purl.obolibrary.org/obo/CHEBI_25367

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T191 0-1065 Sentence denotes Although the direct association with the disease is yet to be confirmed with more experimental data, our results provide several lines of evidence that the virus is most likely associated with this disease: (i) the viral titre is very high, with the abundance level reaching 1.5% and 0.62% of total reads sequenced, surpassing the highest expressed host genes to be one of the most dominant RNA molecules in the host transcriptome, an important sign that the virus is then under active replication [9]; (ii) since our RNA mNGS approach targets the total infectome (except for prion) [10], the fact that no other pathogens were identified from the infected sample underlines the unique role played by 2019-nCoV; (iii) the virus is grouped within the notorious CoV clade (i.e. SARS-like) with history of cross-virus transmission to humans [11] and has been demonstrated to have strong zoonotic potential [12]; and while this manuscript was under preparation, we noticed another case report from Wuhan which identified a same virus as the one found in this study [13].

MyTest

Id Subject Object Predicate Lexical cue
32020836-30355154-27792009 499-500 30355154 denotes 9
32020836-29190287-27792010 838-840 29190287 denotes 11
32020836-26552008-27792011 903-905 26552008 denotes 12
32020836-31987001-27792012 1061-1063 31987001 denotes 13

2_test

Id Subject Object Predicate Lexical cue
32020836-30355154-27792009 499-500 30355154 denotes 9
32020836-29190287-27792010 838-840 29190287 denotes 11
32020836-26552008-27792011 903-905 26552008 denotes 12
32020836-31987001-27792012 1061-1063 31987001 denotes 13