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PMC:7033720 / 19584-20395 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
365 291-296 Gene denotes ORF1a Gene:43740578
366 298-299 Gene denotes S Gene:43740568
367 305-306 Gene denotes N Gene:43740575
368 325-330 Gene denotes ORF1b Gene:43740578
369 340-345 Gene denotes ORF1b Gene:43740578
370 94-103 Species denotes 2019-nCoV Tax:2697049
371 131-135 Species denotes CoVs Tax:11118
372 212-221 Species denotes 2019-nCoV Tax:2697049
373 495-504 Species denotes 2019-nCoV Tax:2697049
374 540-548 Species denotes SARS-CoV Tax:694009
375 606-615 Species denotes 2019-nCoV Tax:2697049

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T92 8-12 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T93 331-335 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T94 346-350 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T95 475-481 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T96 768-774 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T34 540-548 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T204 8-12 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T205 124-127 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T206 149-154 http://purl.obolibrary.org/obo/OGG_0000000002 denotes genes
T207 253-256 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T208 273-276 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T209 307-312 http://purl.obolibrary.org/obo/OGG_0000000002 denotes genes
T210 331-335 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T211 346-350 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T212 352-355 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T213 372-375 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T214 506-509 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T215 621-624 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T60 128-130 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815
T61 257-259 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815
T62 277-279 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815
T63 356-358 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815
T64 376-378 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815
T65 510-512 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815
T66 625-627 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T185 0-197 Sentence denotes Through gene-specific phylogenetic analyses, we also identified phylogenetic incongruence for 2019-nCoV compared with other bat-SL-CoVs at different genes, suggesting potential recombination event.
T186 198-336 Sentence denotes Specifically, 2019-nCoV was closely related to strains bat-SL-CoVZXC21 and bat-SL-CoVZC45 at ORF1a, S, and N genes, but not at ORF1b gene.
T187 337-448 Sentence denotes At ORF1b gene, bat-SL-CoVZXC21 and bat-SL-CoVZC45 were related to strains Longquan-140 and HKU3-10 (Figure 2C).
T188 449-648 Sentence denotes Simplot analyses based on genome alignment of 2019-nCoV, bat-SL-CoVZC45, Longquan-140, and SARS-CoV suggest that the recombinant strain was not likely to be 2019-nCoV, but bat-SL-CoVZC45 (Figure 3B).
T189 649-811 Sentence denotes And it also revealed at least four recombination breakpoints at positions 11,754, 20,664, 22,321, and 24,134 nt of the genome alignment, respectively (Figure 3B).