PMC:7033720 / 18445-19583
Annnotations
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 344 | 294-299 | Gene | denotes | ORF1b | Gene:43740578 |
| 345 | 47-56 | Species | denotes | 2019-nCoV | Tax:2697049 |
| 346 | 67-71 | Species | denotes | CoVs | Tax:11118 |
| 347 | 206-215 | Species | denotes | 2019-nCoV | Tax:2697049 |
| 348 | 252-256 | Species | denotes | CoVs | Tax:11118 |
| 349 | 436-455 | Species | denotes | Rhinolophus affinis | Tax:59477 |
| 350 | 646-665 | Species | denotes | Rhinolophus sinicus | Tax:89399 |
| 351 | 768-777 | Species | denotes | 2019-nCoV | Tax:2697049 |
| 352 | 1077-1083 | Species | denotes | humans | Tax:9606 |
| 353 | 273-284 | Species | denotes | Rhinolophus | Tax:89399 |
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T85 | 111-121 | Body_part | denotes | nucleotide | http://purl.org/sig/ont/fma/fma82740 |
| T86 | 300-304 | Body_part | denotes | gene | http://purl.org/sig/ont/fma/fma74402 |
| T87 | 359-369 | Body_part | denotes | nucleotide | http://purl.org/sig/ont/fma/fma82740 |
| T88 | 402-406 | Body_part | denotes | gene | http://purl.org/sig/ont/fma/fma74402 |
| T89 | 557-567 | Body_part | denotes | nucleotide | http://purl.org/sig/ont/fma/fma82740 |
| T90 | 609-619 | Body_part | denotes | nucleotide | http://purl.org/sig/ont/fma/fma82740 |
| T91 | 905-912 | Body_part | denotes | genomes | http://purl.org/sig/ont/fma/fma84116 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T190 | 10-11 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T191 | 145-150 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | genes |
| T192 | 168-169 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | b |
| T193 | 285-288 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | bat |
| T194 | 300-304 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | gene |
| T195 | 402-406 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | gene |
| T196 | 497-502 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | genes |
| T197 | 529-532 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | bat |
| T198 | 582-585 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | bat |
| T199 | 963-966 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | bat |
| T200 | 967-974 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | viruses |
| T201 | 1026-1027 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T202 | 1069-1073 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | bats |
| T203 | 1077-1083 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | humans |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T54 | 111-121 | Chemical | denotes | nucleotide | http://purl.obolibrary.org/obo/CHEBI_36976 |
| T55 | 359-369 | Chemical | denotes | nucleotide | http://purl.obolibrary.org/obo/CHEBI_36976 |
| T56 | 533-535 | Chemical | denotes | SL | http://purl.obolibrary.org/obo/CHEBI_74815 |
| T57 | 557-567 | Chemical | denotes | nucleotide | http://purl.obolibrary.org/obo/CHEBI_36976 |
| T58 | 586-588 | Chemical | denotes | SL | http://purl.obolibrary.org/obo/CHEBI_74815 |
| T59 | 609-619 | Chemical | denotes | nucleotide | http://purl.obolibrary.org/obo/CHEBI_36976 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T179 | 0-180 | Sentence | denotes | To reveal a more detailed relationship between 2019-nCoV and other CoVs, we reconstructed phylogenies based on nucleotide alignment of key viral genes, including ORF1a/b, S, and N. |
| T180 | 181-289 | Sentence | denotes | Within this cluster, the 2019-nCoV also shared close relationship with CoVs originated from Rhinolophus bat. |
| T181 | 290-666 | Sentence | denotes | For ORF1b gene, the closest relative is BtCoV/4991 (KP876546, 98.65% nucleotide identity, based on partial RdRp gene comparisons) identified from Rhinolophus affinis from Yunnan; whereas for the rest of the genes analysed, the closest are bat-SL-CoVZXC21 (76.5–91.2% nucleotide identity) and bat-SL-CoVZC45 (76.9–91.2% nucleotide identity) identified from Rhinolophus sinicus. |
| T182 | 667-778 | Sentence | denotes | The close relationship with BtCoV/4991 is quite essential in tracing the potential reservoir host of 2019-nCoV. |
| T183 | 779-913 | Sentence | denotes | Unfortunately, the BtCoV/4991 sequence was only partial (373bp in length) and thus no comparisons can be made for the rest of genomes. |
| T184 | 914-1138 | Sentence | denotes | However, the presence of such close relatives in bat viruses strongly suggests that it might be originated from a recent and independent introduction from bats to humans, although its immediate hosts remain to be identified. |