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PMC:7033720 / 1773-3312 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
62 1059-1068 Disease denotes pneumonia MESH:D011014
57 187-192 Species denotes human Tax:9606
58 286-293 Species denotes patient Tax:9606
59 614-625 Species denotes DNA viruses Tax:2080735
60 703-708 Species denotes prion Tax:36469
61 25-44 Disease denotes infectious diseases MESH:D003141
63 1087-1096 Disease denotes infection MESH:D007239

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T11 520-523 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T12 601-604 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T13 614-617 Body_part denotes DNA http://purl.org/sig/ont/fma/fma74412
T14 717-720 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T15 739-742 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T16 837-843 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T17 858-862 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T18 1368-1371 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T3 25-35 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T4 421-431 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T5 1059-1068 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T6 1087-1096 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T21 61-62 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T22 176-183 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animals
T23 187-192 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T24 605-612 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T25 618-625 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T26 627-635 http://purl.obolibrary.org/obo/NCBITaxon_2 denotes bacteria
T27 640-650 http://purl.obolibrary.org/obo/NCBITaxon_2759 denotes eukaryotes
T28 670-678 http://purl.obolibrary.org/obo/OBI_0100026 denotes organism
T29 670-678 http://purl.obolibrary.org/obo/UBERON_0000468 denotes organism
T30 858-862 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T31 1396-1397 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T32 1443-1444 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T5 614-617 Chemical denotes DNA http://purl.obolibrary.org/obo/CHEBI_16991

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T5 1059-1068 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 858-873 http://purl.obolibrary.org/obo/GO_0010467 denotes gene expression

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T16 0-93 Sentence denotes The epidemic of emerging infectious diseases worldwide poses a great threat to public health.
T17 94-193 Sentence denotes It is noted that most epidemic is caused by viral cross-species transmission from animals to human.
T18 194-304 Sentence denotes Surveillance by fast and accurate diagnostic methods is crucial for the disease control and patient treatment.
T19 305-505 Sentence denotes Thanks to the development of metagenomic next-generation sequencing (mNGS) methodology, the direct investigation of infectious microorganism from original clinical samples is currently achievable [1].
T20 506-725 Sentence denotes Particularly, RNA based mNGS approach could simultaneously reveal the entire “infectome” (i.e. RNA viruses, DNA viruses, bacteria and eukaryotes) present within an organism, because all except for prion express RNA [2].
T21 726-1007 Sentence denotes Furthermore, RNA sequencing goes beyond pathogen identification to reveal relevant data on pathogen abundance, genome sequence, and gene expression, providing important insight into the cause of disease such that it represents an avant-guard diagnostic tool in the information age.
T22 1008-1130 Sentence denotes Recently, in December 2019, an outbreak of unusual pneumonia caused by unknown infection was reported in Wuhan, China [3].
T23 1131-1297 Sentence denotes The earlier cases (before January) were all linked to Huanan Seafood Market in Wuhan before the disease was further spread to other cities of China and even overseas.
T24 1298-1539 Sentence denotes Since this is an outbreak with unknown etiology, we report the use of RNA based mNGS approach for a rapid identification and characterization of a potential pathogen, which is therefore of great importance for disease control and prevention.

MyTest

Id Subject Object Predicate Lexical cue
32020836-30355154-27792001 502-503 30355154 denotes 1
32020836-29111455-27792002 722-723 29111455 denotes 2
32020836-32005086-27792003 1127-1128 32005086 denotes 3

2_test

Id Subject Object Predicate Lexical cue
32020836-30355154-27792001 502-503 30355154 denotes 1
32020836-29111455-27792002 722-723 29111455 denotes 2
32020836-32005086-27792003 1127-1128 32005086 denotes 3