> top > docs > PMC:7033720 > spans > 1760-3312 > annotations

PMC:7033720 / 1760-3312 JSONTXT

Annnotations TAB JSON ListView MergeView

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
62 1072-1081 Disease denotes pneumonia MESH:D011014
57 200-205 Species denotes human Tax:9606
58 299-306 Species denotes patient Tax:9606
59 627-638 Species denotes DNA viruses Tax:2080735
60 716-721 Species denotes prion Tax:36469
61 38-57 Disease denotes infectious diseases MESH:D003141
63 1100-1109 Disease denotes infection MESH:D007239

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T11 533-536 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T12 614-617 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T13 627-630 Body_part denotes DNA http://purl.org/sig/ont/fma/fma74412
T14 730-733 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T15 752-755 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T16 850-856 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T17 871-875 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T18 1381-1384 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T3 38-48 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T4 434-444 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T5 1072-1081 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T6 1100-1109 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T21 74-75 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T22 189-196 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animals
T23 200-205 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T24 618-625 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T25 631-638 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T26 640-648 http://purl.obolibrary.org/obo/NCBITaxon_2 denotes bacteria
T27 653-663 http://purl.obolibrary.org/obo/NCBITaxon_2759 denotes eukaryotes
T28 683-691 http://purl.obolibrary.org/obo/OBI_0100026 denotes organism
T29 683-691 http://purl.obolibrary.org/obo/UBERON_0000468 denotes organism
T30 871-875 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T31 1409-1410 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T32 1456-1457 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T5 627-630 Chemical denotes DNA http://purl.obolibrary.org/obo/CHEBI_16991

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T5 1072-1081 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 871-886 http://purl.obolibrary.org/obo/GO_0010467 denotes gene expression

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T15 0-12 Sentence denotes Introduction
T16 13-106 Sentence denotes The epidemic of emerging infectious diseases worldwide poses a great threat to public health.
T17 107-206 Sentence denotes It is noted that most epidemic is caused by viral cross-species transmission from animals to human.
T18 207-317 Sentence denotes Surveillance by fast and accurate diagnostic methods is crucial for the disease control and patient treatment.
T19 318-518 Sentence denotes Thanks to the development of metagenomic next-generation sequencing (mNGS) methodology, the direct investigation of infectious microorganism from original clinical samples is currently achievable [1].
T20 519-738 Sentence denotes Particularly, RNA based mNGS approach could simultaneously reveal the entire “infectome” (i.e. RNA viruses, DNA viruses, bacteria and eukaryotes) present within an organism, because all except for prion express RNA [2].
T21 739-1020 Sentence denotes Furthermore, RNA sequencing goes beyond pathogen identification to reveal relevant data on pathogen abundance, genome sequence, and gene expression, providing important insight into the cause of disease such that it represents an avant-guard diagnostic tool in the information age.
T22 1021-1143 Sentence denotes Recently, in December 2019, an outbreak of unusual pneumonia caused by unknown infection was reported in Wuhan, China [3].
T23 1144-1310 Sentence denotes The earlier cases (before January) were all linked to Huanan Seafood Market in Wuhan before the disease was further spread to other cities of China and even overseas.
T24 1311-1552 Sentence denotes Since this is an outbreak with unknown etiology, we report the use of RNA based mNGS approach for a rapid identification and characterization of a potential pathogen, which is therefore of great importance for disease control and prevention.

MyTest

Id Subject Object Predicate Lexical cue
32020836-30355154-27792001 515-516 30355154 denotes 1
32020836-29111455-27792002 735-736 29111455 denotes 2
32020836-32005086-27792003 1140-1141 32005086 denotes 3

2_test

Id Subject Object Predicate Lexical cue
32020836-30355154-27792001 515-516 30355154 denotes 1
32020836-29111455-27792002 735-736 29111455 denotes 2
32020836-32005086-27792003 1140-1141 32005086 denotes 3