> top > docs > PMC:7033720 > spans > 176-1758 > annotations

PMC:7033720 / 176-1758 JSONTXT

Annnotations TAB JSON ListView MergeView

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
27 1468-1469 Gene denotes S Gene:43740568
28 1475-1476 Gene denotes N Gene:43740575
29 203-211 Species denotes patients Tax:9606
30 314-322 Species denotes patients Tax:9606
31 649-666 Species denotes novel coronavirus Tax:2697049
32 674-683 Species denotes 2019-nCoV Tax:2697049
33 1019-1032 Species denotes β-coronavirus Tax:694002
34 1077-1086 Species denotes 2019-nCoV Tax:2697049
35 1099-1112 Species denotes coronaviruses Tax:11118
36 1114-1118 Species denotes CoVs Tax:11118
37 1148-1162 Species denotes Horseshoe bats Tax:49442
38 1223-1238 Species denotes bat coronavirus Tax:1508220
39 1368-1383 Species denotes bat coronavirus Tax:1508220
40 1497-1506 Species denotes 2019-nCoV Tax:2697049
41 1524-1533 Species denotes novel CoV Tax:2697049
42 1575-1581 Species denotes humans Tax:9606
43 1135-1146 Species denotes Rhinolophus Tax:89399
44 52-61 Disease denotes pneumonia MESH:D011014
45 226-253 Disease denotes acute respiratory syndromes MESH:D012120
46 365-370 Disease denotes fever MESH:D005334
47 372-377 Disease denotes cough MESH:D003371
48 908-916 CellLine denotes MN988668 CVCL:U508
49 921-929 CellLine denotes MN988669 CVCL:U508

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T2 432-436 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T3 569-572 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T4 751-755 Body_part denotes sole http://purl.org/sig/ont/fma/fma25000
T5 836-839 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T6 869-875 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T7 1179-1189 Body_part denotes nucleotide http://purl.org/sig/ont/fma/fma82740
T8 1215-1219 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T9 1318-1324 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T10 1345-1355 Body_part denotes nucleotide http://purl.org/sig/ont/fma/fma82740

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 432-442 Body_part denotes lung field http://purl.obolibrary.org/obo/UBERON_0022361
T2 432-436 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T2 52-61 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T3 137-142 http://purl.obolibrary.org/obo/PR_000001318 denotes sells
T4 174-181 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animals
T5 432-436 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T6 432-436 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T7 437-442 http://purl.obolibrary.org/obo/UBERON_0007688 denotes field
T8 499-500 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T9 647-648 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T10 710-722 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T11 1158-1162 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bats
T12 1215-1219 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T13 1223-1226 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T14 1368-1371 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T15 1391-1394 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T16 1410-1413 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T17 1477-1482 http://purl.obolibrary.org/obo/OGG_0000000002 denotes genes
T18 1522-1523 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T19 1564-1571 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animals
T20 1575-1581 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 1179-1189 Chemical denotes nucleotide http://purl.obolibrary.org/obo/CHEBI_36976
T2 1345-1355 Chemical denotes nucleotide http://purl.obolibrary.org/obo/CHEBI_36976
T3 1395-1397 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815
T4 1414-1416 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T2 52-61 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T3 365-370 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T4 372-377 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T6 0-8 Sentence denotes ABSTRACT
T7 9-182 Sentence denotes From December 2019, an outbreak of unusual pneumonia was reported in Wuhan with many cases linked to Huanan Seafood Market that sells seafood as well as live exotic animals.
T8 183-305 Sentence denotes We investigated two patients who developed acute respiratory syndromes after independent contact history with this market.
T9 306-468 Sentence denotes The two patients shared common clinical features including fever, cough, and multiple ground-glass opacities in the bilateral lung field with patchy infiltration.
T10 469-624 Sentence denotes Here, we highlight the use of a low-input metagenomic next-generation sequencing (mNGS) approach on RNA extracted from bronchoalveolar lavage fluid (BALF).
T11 625-851 Sentence denotes It rapidly identified a novel coronavirus (named 2019-nCoV according to World Health Organization announcement) which was the sole pathogens in the sample with very high abundance level (1.5% and 0.62% of total RNA sequenced).
T12 852-1039 Sentence denotes The entire viral genome is 29,881 nt in length (GenBank MN988668 and MN988669, Sequence Read Archive database Bioproject accession PRJNA601736) and is classified into β-coronavirus genus.
T13 1040-1426 Sentence denotes Phylogenetic analysis indicates that 2019-nCoV is close to coronaviruses (CoVs) circulating in Rhinolophus (Horseshoe bats), such as 98.7% nucleotide identity to partial RdRp gene of bat coronavirus strain BtCoV/4991 (GenBank KP876546, 370 nt sequence of RdRp and lack of other genome sequence) and 87.9% nucleotide identity to bat coronavirus strain bat-SL-CoVZC45 and bat-SL-CoVZXC21.
T14 1427-1582 Sentence denotes Evolutionary analysis based on ORF1a/1b, S, and N genes also suggests 2019-nCoV is more likely a novel CoV independently introduced from animals to humans.