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PMC:7033720 / 17590-18444 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
287 163-168 Gene denotes ORF1b Gene:43740578
288 52-56 Species denotes CoVs Tax:11118
289 77-86 Species denotes 2019-nCoV Tax:2697049
290 119-123 Species denotes CoVs Tax:11118
291 227-232 Species denotes human Tax:9606
292 334-338 Species denotes CoVs Tax:11118
293 456-464 Species denotes SARS-CoV Tax:694009
294 640-644 Species denotes CoVs Tax:11118
295 818-827 Species denotes SARS CoVs Tax:694009

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T79 169-176 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T80 356-362 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T81 510-516 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T82 686-696 Body_part denotes nucleotide http://purl.org/sig/ont/fma/fma82740
T83 774-778 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T84 833-837 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T31 456-464 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T32 630-634 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T33 818-822 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T179 58-59 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T180 227-232 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T181 244-251 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T182 353-354 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T183 393-400 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T184 437-440 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T185 468-469 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T186 607-614 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T187 714-719 http://purl.obolibrary.org/obo/OGG_0000000002 denotes genes
T188 774-778 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T189 833-837 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T49 169-176 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T50 318-323 Chemical denotes alpha http://purl.obolibrary.org/obo/CHEBI_30216
T51 329-333 Chemical denotes beta http://purl.obolibrary.org/obo/CHEBI_10545
T52 441-443 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815
T53 686-696 Chemical denotes nucleotide http://purl.obolibrary.org/obo/CHEBI_36976

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T169 0-57 Sentence denotes Origin and evolutionary history of newly identified CoVs.
T170 58-124 Sentence denotes A. the position of 2019-nCoV in the context of all reference CoVs.
T171 125-187 Sentence denotes The phylogeny is constructed based on ORF1b protein alignment.
T172 188-252 Sentence denotes For clarity, names were only shown for human-associated viruses.
T173 253-352 Sentence denotes Bat associated diversity is shaded with blue and green boxes for alpha- and beta-CoVs respectively.
T174 353-517 Sentence denotes B. genome structure of newly identified viruses and its sequence similarity against bat-SL-CoVZC45 and SARS-CoV in a 1000bp sliding window across the entire genome.
T175 518-579 Sentence denotes Recombination breakpoints are shown as dashed vertical lines.
T176 580-645 Sentence denotes C. the relationship of WHU viruses with the other SARS-like CoVs.
T177 646-745 Sentence denotes Phylogeny is reconstructed based on the nucleotide sequence of four genes: namely 1a, 1b, S, and N.
T178 746-854 Sentence denotes Those grouped with WHU at S gene are marked red, and those grouped with SARS CoVs at S gene are marked blue.