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PMC:7033720 / 0-1065 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
2 43-60 Species denotes human coronavirus Tax:694448
3 81-90 Disease denotes pneumonia MESH:D011014
29 379-387 Species denotes patients Tax:9606
30 490-498 Species denotes patients Tax:9606
31 825-842 Species denotes novel coronavirus Tax:2697049
32 850-859 Species denotes 2019-nCoV Tax:2697049
44 228-237 Disease denotes pneumonia MESH:D011014
45 402-429 Disease denotes acute respiratory syndromes MESH:D012120
46 541-546 Disease denotes fever MESH:D005334
47 548-553 Disease denotes cough MESH:D003371

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 0-3 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T2 608-612 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T3 745-748 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T4 927-931 Body_part denotes sole http://purl.org/sig/ont/fma/fma25000
T5 1012-1015 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T6 1045-1051 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 608-618 Body_part denotes lung field http://purl.obolibrary.org/obo/UBERON_0022361
T2 608-612 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 81-90 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T2 228-237 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 35-36 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T2 43-48 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T3 313-318 http://purl.obolibrary.org/obo/PR_000001318 denotes sells
T4 350-357 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animals
T5 608-612 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T6 608-612 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T7 613-618 http://purl.obolibrary.org/obo/UBERON_0007688 denotes field
T8 675-676 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T9 823-824 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T10 886-898 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 81-90 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T2 228-237 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T3 541-546 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T4 548-553 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T1 0-119 Sentence denotes RNA based mNGS approach identifies a novel human coronavirus from two individual pneumonia cases in 2019 Wuhan outbreak
T2 120-150 Sentence denotes Emerging Microbes & Infections
T3 151-153 Sentence denotes L.
T4 154-165 Sentence denotes Chen et al.
T5 167-175 Sentence denotes Abstract
T6 176-184 Sentence denotes ABSTRACT
T7 185-358 Sentence denotes From December 2019, an outbreak of unusual pneumonia was reported in Wuhan with many cases linked to Huanan Seafood Market that sells seafood as well as live exotic animals.
T8 359-481 Sentence denotes We investigated two patients who developed acute respiratory syndromes after independent contact history with this market.
T9 482-644 Sentence denotes The two patients shared common clinical features including fever, cough, and multiple ground-glass opacities in the bilateral lung field with patchy infiltration.
T10 645-800 Sentence denotes Here, we highlight the use of a low-input metagenomic next-generation sequencing (mNGS) approach on RNA extracted from bronchoalveolar lavage fluid (BALF).
T11 801-1027 Sentence denotes It rapidly identified a novel coronavirus (named 2019-nCoV according to World Health Organization announcement) which was the sole pathogens in the sample with very high abundance level (1.5% and 0.62% of total RNA sequenced).