PMC:7033698 / 7246-8142
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T56 | 112-116 | Body_part | denotes | gene | http://purl.org/sig/ont/fma/fma74402 |
| T57 | 419-426 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T58 | 431-434 | Body_part | denotes | HIV | http://purl.org/sig/ont/fma/fma278683 |
| T59 | 732-735 | Body_part | denotes | HIV | http://purl.org/sig/ont/fma/fma278683 |
| T60 | 805-807 | Body_part | denotes | V1 | http://purl.org/sig/ont/fma/fma13444|http://purl.org/sig/ont/fma/fma68614 |
| T62 | 808-810 | Body_part | denotes | V2 | http://purl.org/sig/ont/fma/fma13443|http://purl.org/sig/ont/fma/fma68615 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T73 | 49-52 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | bat |
| T74 | 69-70 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T75 | 112-116 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | gene |
| T76 | 129-130 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | B |
| T77 | 206-209 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | bat |
| T78 | 663-671 | http://purl.obolibrary.org/obo/CLO_0007225 | denotes | labelled |
| T79 | 829-837 | http://purl.obolibrary.org/obo/CLO_0007225 | denotes | labelled |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T12 | 419-426 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T13 | 709-716 | Chemical | denotes | magenta | http://purl.obolibrary.org/obo/CHEBI_87661 |
| T14 | 815-817 | Chemical | denotes | LE | http://purl.obolibrary.org/obo/CHEBI_74531 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T62 | 0-232 | Sentence | denotes | Sequence and structure analysis of 2019-nCoV and bat coronaviruses. (A) Phylogenetic tree analysis of the spike gene sequences. (B) Sequence alignment of suspected insertion sites between the 2019-nCoV and bat coronavirus sequences. |
| T63 | 233-284 | Sentence | denotes | The deletions in the alignment are shown as dashes. |
| T64 | 285-443 | Sentence | denotes | The numbers of insertions are indicated at the top of the alignment. (C) Structure comparison of the four insertions in the CoV spike protein and HIV-1 gp120. |
| T65 | 444-523 | Sentence | denotes | 2019-nCoV structure was modelled using I-TASSER server with default parameters. |
| T66 | 524-637 | Sentence | denotes | Only relevant domains with residues 1 to 708 (exclude residues from 305 to 603) were presented as ribbon diagram. |
| T67 | 638-731 | Sentence | denotes | The four insertions were labelled and coloured in red, blue, green and magenta, respectively. |
| T68 | 732-796 | Sentence | denotes | HIV-1 gp120 structure (PDB 1GC1) is presented as ribbon diagram. |
| T69 | 797-896 | Sentence | denotes | V4, V5, V1/V2 and LE loops were labelled and coloured in red, blue, green, and black, respectively. |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 171 | 106-111 | Gene | denotes | spike | Gene:43740568 |
| 172 | 437-442 | Gene | denotes | gp120 | Gene:3700 |
| 173 | 738-743 | Gene | denotes | gp120 | Gene:3700 |
| 174 | 413-418 | Gene | denotes | spike | Gene:43740568 |
| 175 | 35-44 | Species | denotes | 2019-nCoV | Tax:2697049 |
| 176 | 53-66 | Species | denotes | coronaviruses | Tax:11118 |
| 177 | 192-201 | Species | denotes | 2019-nCoV | Tax:2697049 |
| 178 | 206-221 | Species | denotes | bat coronavirus | Tax:1508220 |
| 179 | 409-412 | Species | denotes | CoV | Tax:11118 |
| 180 | 431-436 | Species | denotes | HIV-1 | Tax:11676 |
| 181 | 444-453 | Species | denotes | 2019-nCoV | Tax:2697049 |
| 182 | 732-737 | Species | denotes | HIV-1 | Tax:11676 |
| 183 | 164-173 | Species | denotes | insertion | Tax:2673 |