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PMC:7033348 / 2414-6673 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 128-132 Body_part denotes back http://purl.org/sig/ont/fma/fma25056

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T4 60-68 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T5 60-64 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T6 156-165 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T7 745-778 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T8 780-784 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T9 899-903 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T12 136-137 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T13 217-219 http://purl.obolibrary.org/obo/CLO_0001022 denotes Li
T14 217-219 http://purl.obolibrary.org/obo/CLO_0007314 denotes Li
T15 247-259 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T16 315-316 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T17 322-328 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animal
T18 366-367 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T19 410-415 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T20 419-424 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T21 438-441 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T22 471-472 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T23 516-519 http://purl.obolibrary.org/obo/CLO_0001001 denotes 813
T24 844-847 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T25 944-956 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T26 1093-1098 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T27 1106-1107 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T28 1321-1322 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T29 1360-1362 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T30 1763-1764 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T31 2106-2107 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T32 2171-2172 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T33 2482-2483 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T34 2694-2697 http://purl.obolibrary.org/obo/CLO_0054061 denotes 132
T35 3947-3951 http://purl.obolibrary.org/obo/CLO_0001185 denotes 2018

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 217-219 Chemical denotes Li http://purl.obolibrary.org/obo/CHEBI_30145
T2 1532-1534 Chemical denotes Ho http://purl.obolibrary.org/obo/CHEBI_49648
T3 1571-1585 Chemical denotes pharmaceutical http://purl.obolibrary.org/obo/CHEBI_52217
T4 3369-3384 Chemical denotes antiviral drugs http://purl.obolibrary.org/obo/CHEBI_36044
T5 3369-3378 Chemical denotes antiviral http://purl.obolibrary.org/obo/CHEBI_22587
T6 3379-3384 Chemical denotes drugs http://purl.obolibrary.org/obo/CHEBI_23888

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T2 156-165 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T3 2108-2113 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T4 2173-2178 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T15 0-12 Sentence denotes Introduction
T16 13-267 Sentence denotes The ongoing epidemic of the novel coronavirus (SARS-CoV-2) is primarily affecting mainland China and can be traced back to a cluster of severe pneumonia cases identified in Wuhan, China in December 2019 (Li et al., 2020; World Health Organization, 2020).
T17 268-400 Sentence denotes Early cases of the disease have been linked to a live animal seafood market in Wuhan, pointing to a zoonotic origin of the epidemic.
T18 401-651 Sentence denotes However, human-to-human transmission has driven its rapid spread with a total of 37,289 confirmed cases, including 813 deaths, in China and 302 confirmed cases imported in multiple countries as of February 9, 2020 (Chinese National Health Committee).
T19 652-930 Sentence denotes While the early transmission potential of this novel coronavirus appeared similar to that of severe acute respiratory syndrome (SARS) (Riou & Althaus, 2020), the current tally of the epidemic has already surpassed the total cases reported for the SARS outbreaks in 2002–2003 (W.
T20 931-1010 Sentence denotes World Health Organization, 2003; Wu, Leung, & Leung, 2020; Zhang et al., 2020).
T21 1011-1133 Sentence denotes The timing and location of the outbreak facilitated the rapid transmission of the virus within a highly mobile population.
T22 1134-1302 Sentence denotes The initial reporting of observed cases occurred during the traditional Chinese New Year, when the largest population movement takes place every year (Ai et al., 2020).
T23 1303-1552 Sentence denotes Further, Wuhan is a highly populated city with more than 11 million residents and is connected to many cities in China through public transportation, such as buses, trains, and flights (Lai et al., 2020; Read, Bridgen, Cummings, Ho, & Jewell, 2020).
T24 1553-1706 Sentence denotes In the absence of pharmaceutical interventions, rapid action was required by the Chinese government to mitigate transmission within and outside of Wuhan.
T25 1707-1992 Sentence denotes On January 23, 2020, the Chinese government implemented a strict lockdown of Wuhan, followed by several nearby cities in subsequent days; the lockdowns include temporarily suspending all public transportation and advising residents to remain at home (Du et al., 2020; Wu et al., 2020).
T26 1993-2248 Sentence denotes Further, many high-speed rail stations and airports have implemented screening measures to detect travelers with a fever, specifically those traveling from Wuhan, and those with a fever are referred to public hospitals (Lai et al., 2020; Wu et al., 2020).
T27 2249-2371 Sentence denotes Within hospitals, patients who fulfill clinical and epidemiological characteristics of 2019-nCoV are immediately isolated.
T28 2372-2528 Sentence denotes The number of 2019-nCoV cases in Wuhan quickly outnumbered the available number of beds in hospitals, putting a substantial burden on the healthcare system.
T29 2529-2760 Sentence denotes Consequently, the government rapidly built and launched two new hospitals with capacity for 1,600 and 1,000 beds, respectively, in Wuhan in addition to the existing 132 quarantine sites with more than 12,500 beds (Steinbuch, 2020).
T30 2761-2936 Sentence denotes To anticipate additional resources to combat the epidemic, mathematical and statistical modeling tools can be useful to generate timely short-term forecasts of reported cases.
T31 2937-3129 Sentence denotes These predictions can include estimates of expected morbidity burden that can help guide public health officials preparing the medical care and other resources needed to confront the epidemic.
T32 3130-3338 Sentence denotes Short-term forecasts can also guide the intensity and type of interventions needed to mitigate an epidemic (Funk, Camacho, Kucharski, Eggo, & Edmunds, 2016; Shanafelt, Jones, Lima, Perrings, & Chowell, 2017).
T33 3339-3569 Sentence denotes In the absence of vaccines or antiviral drugs for 2019-nCoV, the effective implementation of nonpharmaceutical interventions, such as personal protection and social distancing, will be critical to bring the epidemic under control.
T34 3570-3760 Sentence denotes In this emerging epidemic, the epidemiological data is limited, and the epidemiological parameters needed to calibrate elaborate mechanistic transmission models are not yet fully elucidated.
T35 3761-3990 Sentence denotes Real-time short-term forecasts must be based on dynamic phenomenological models that have been validated during previous outbreaks (Chowell et al., 2016; Pell, Kuang, Viboud, & Chowell, 2018)(Bürger, Chowell, & Lara-Díıaz, 2019).
T36 3991-4259 Sentence denotes We employ several dynamic models to generate and assess 5, 10, and 15 day ahead forecasts of the cumulative number of confirmed cases in Hubei province, the epicenter of the epidemic, and the overall trajectory of the epidemic in China excluding the province of Hubei.

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
13 60-64 Disease denotes SARS MESH:D045169
14 156-165 Disease denotes pneumonia MESH:D011014
15 368-376 Disease denotes zoonotic MESH:D015047
16 520-526 Disease denotes deaths MESH:D003643
17 745-778 Disease denotes severe acute respiratory syndrome MESH:D045169
18 780-784 Disease denotes SARS MESH:D045169
19 899-903 Disease denotes SARS MESH:D045169
22 2108-2113 Disease denotes fever MESH:D005334
23 2173-2178 Disease denotes fever MESH:D005334

2_test

Id Subject Object Predicate Lexical cue
32110742-28038870-47437626 3281-3285 28038870 denotes 2016
32110742-27913131-47437627 3947-3951 27913131 denotes 2018
32110742-31499661-47437628 3984-3988 31499661 denotes 2019
T44406 3281-3285 28038870 denotes 2016
T52035 3947-3951 27913131 denotes 2018
T75543 3984-3988 31499661 denotes 2019