PMC:7033275 / 984-7527 JSONTXT

{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/7033275","sourcedb":"PMC","sourceid":"7033275","source_url":"https://www.ncbi.nlm.nih.gov/pmc/7033275","text":"ANNOUNCEMENT\nHuman coronavirus NL63 (HCoV-NL63) is a member of the family Coronaviridae, genus Alphacoronavirus, and was first discovered in 2004 (1). HCoV-NL63 is mainly associated with the common cold in children, the elderly, and immunocompromised patients (2, 3). The genome of HCoV-NL63 is about 27 kb with a conserved gene order of 5′-orf1ab-spike (S)-orf3-envelope (E)-membrane (M)-nucleocapsid (N)-poly (A). The species tropism of HCoV-NL63 is determined by spike glycoprotein. HCoV-NL63 and severe acute respiratory syndrome coronavirus (SARS-CoV) share the same cell receptor, angiotensin converting enzyme 2 (ACE-2) (4, 5), for entry into host cells, and HCoV-NL63 is recognized as a common cause of upper respiratory tract infection and has been prevalent worldwide.\nHere, nasopharyngeal swab samples were collected from hospitalized children with severe acute respiratory infection in Guangzhou, China, in 2018. This study was performed in strict accordance with human subject protection guidance provided by the Research Ethics Committee of Guangzhou Medical University. The respiratory samples were filtered with 0.22-μm filters, RNA extraction was performed using a Qiagen viral RNA extraction kit, and extracted RNA was used for sequence-independent single-primer amplification (SISPA) (6, 7) as follows: a reverse transcription reaction was performed with SuperScript III reverse transcriptase using a primer containing a fixed sequence, followed by a random hexamer at the 3′ end (FR26RV, GCCGGAGCTCTGCAGATATCNNNNNN). Then, Klenow fragment polymerase (New England Biolabs) was used for DNA synthesis. Finally, PCR amplification was conducted using primers consisting of the fixed portions of the random primers (FR26, GCCGGAGCTCTGCAGATATC). Purified DNA was used for next-generation sequencing (NGS). Libraries were prepared with the Nextera XT kit (Illumina), and paired-end reads (2 × 125 bp) determined using a HiSeq 2500 instrument were used for cleaning and assembling using CLC Genomics Workbench version 11.0. Illumina sequencing yielded about 10 million reads per sample. Reads were assembled into contigs with a de novo assembly model, and the contig sequences were then extracted for subsequent analysis. Partial genome sequences of five HCoV-NL63 strains were obtained by NGS methods. Meanwhile, sets of specific primer pairs were designed and used to amplify the gap region of HCoV-NL63, which was used for genome assemblies using the SeqMan subprogram of the DNAStar software version 7.1.0 with default parameters (Table 1). Finally, five complete genome sequences of HCoV-NL63 were obtained using next-generation sequencing and Sanger sequencing methods together and were designated strains ChinaGD01 (27,531 bp), ChinaGD02 (27,516 bp), ChinaGD03 (27,516 bp), ChinaGD04 (27,532 bp), and ChinaGD05 (27,544 bp). The five HCoV-NL63 strains presented here were aligned using MAFFT version 7.158 (8) and showed 98.5 to ∼99.1% nucleotide homology with the prototype HCoV-NL63 virus (GenBank accession number NC_005831.2) as estimated using MEGA version 5.10 software (9) (Fig. 1).\nTABLE 1 Primers used for the genome sequencing of HCoV-NL63\nPrimer Sequence (5′–3′) Target (nucleotide position) or amplification method Size (bp)\n1F CCTGGCCTCTTGCTTTTTCACATGT 20504 1,686\n1R ACTTCGACGGTTGAGAAACAAATAG 22189 1,686\n2F CGCGTTAAGAGTGGTTCACCAGGTG 22059 1,623\n2R CAAAGCTGCAAGCCGTCCAGTAATT 23681 1,623\n3F TTCAATTCAAGCCGATCAACAAGTT 23624 1,600\n3R GTCATCAATTAATCGAAGGAACATC 25223 1,600\n4F CGAAGAGCCTGTTGTTGGTATAGTC 25153 1,690\n4R AACACGCTTCCAACGAGGTTTCTTC 26849 1,690\n5F CCAGGGCTGATAAGCCTTCTCAGTT 26800 754\n5R GTGTATCCATATCAAAAACAATATC 27553 754\n6F TGAGGATGTTTGTGTTTGTTTTGAC 18864 1,710\n6R GTCAGGAACACCTAATTGTAACATA 20573 1,710\n7F TGCGTGGTTGGTTGGGTATGGATGT 17234 1,682\n7R ACGCTCATACGAACCCTGAATACTA 18915 1,682\n8F ATTCAGCAACTGGTTCCTTAGATGT 15479 1,808\n8R GTTATCGCCACAAACATGAGCACTT 17286 1,808\n9F CTCCCTACTATGACACAGCTGAATC 14005 1,596\n9R AGCCGCAAAGAGTCTAAGTGTATCT 15600 1,596\n10F GACCGTACAACTATTCAAAGTGTTG 12398 1,659\n10R GTTCTTTACCACTAATAGCATACTT 14056 1,659\n11F GGGCTATGGCTAATGGTTATACAAG 9801 1,435\n11R TTTGCGATATTCATGGCACGCTTCA 11235 1,435\n12F ACCCTTCAGAGTGTTGCTTCATCAT 11090 1,378\n12R AGTCGAGCTGCACTAGAACCCCTTG 12467 1,378\n13F CAACCACTGTAACTAGCTTTCATGG 7758 2,103\n13R CTGCCAAAATAGAATAGCACTCAAC 9860 2,103\n14F GTCAAAAGGGTGATGCTGAAGAGGC 5424 2,394\n14R TCAACTGACCATTCTCAATGTACTT 7817 2,394\n15F TAGAGATGAATTGGGTGTTCGTGTT 3424 2,043\n15R GGTCCAACATCACCTGTAACAAATT 5466 2,043\n16F GCAGATGTTCCAGATGCTTTTCAAT 1637 1,864\n16R GCAACTGTACAAGTGTGGTACTAAT 3500 1,864\n17F CAGCAATTATGTTCTTCAGGACTTT 565 1,118\n17R GTGTAAATGTGCGATAAACTGATTG 1682 1,118\n18F CTTAAAGAATTTTTCTATCTATAGA 1 1,056\n18R CATGCACCAACACTCCAACTCTCAG 1056 1,056\nGSP 1 CGAAGAGCCTGTTGTTGGTATAGTC 3′ RACEa Unknown\nAP GGCCACGCGTCGACTAGTACTTTTTTTTTTTTTTTTT 3′ RACE Unknown\nGSP 2 CCAGGGCTGATAAGCCTTCTCAGTT Nested PCR Unknown\nAUAP GGCCACGCGTCGACTAGTAC Nested PCR Unknown\nAAP GGCCACGCGTCGACTAGTACGGGGGGGGGG 5′ RACE Unknown\nGSP 1 GTGTAAATGTGCGATAAACTGATTG 5′ RACE Unknown\nAUAP GGCCACGCGTCGACTAGTAC Nested PCR Unknown\nGSP 2 CATGCACCAACACTCCAACTCTCAG Nested PCR Unknown\nGSP3 CCATGGCCAAAAACAACATCAAAGT Nested PCR Unknown\na RACE, rapid amplification of cDNA ends.\nFIG 1 Phylogenetic analysis of HCoV-NL63 based on complete genomes. The complete genomes of 69 coronavirus references were obtained from the GenBank database, and multiple alignments were performed using MAFFT version 7.158 with default parameters. The phylogenetic tree was constructed using the neighbor-joining method with 1,000 bootstraps in MEGA version 5.10 with default parameters. The numbers at the nodes represent bootstrap support. Bootstrap values greater than 70% were considered statistically significant for grouping. The HCoV-NL63 strains presented in this study are marked with red circles. Only two complete genome sequences of HCoV-NL63 associated with acute respiratory illness have been obtained and reported in China. The complete genome sequence data from our study will provide insight into the evolution and genetic diversity of HCoV-NL63 in China.\n\nData availability.\nThe complete genome sequences of the five newly identified HCoV-NL63 strains have been deposited in GenBank under the accession numbers MK334043, MK334044, MK334045, MK334046, and MK334047. The sequencing reads are available in the SRA database under BioProject accession number PRJNA601331.","divisions":[{"label":"title","span":{"begin":0,"end":12}},{"label":"p","span":{"begin":13,"end":778}},{"label":"p","span":{"begin":779,"end":3107}},{"label":"table-wrap","span":{"begin":3108,"end":5356}},{"label":"label","span":{"begin":3108,"end":3115}},{"label":"caption","span":{"begin":3117,"end":3168}},{"label":"p","span":{"begin":3117,"end":3168}},{"label":"table","span":{"begin":3169,"end":5313}},{"label":"tr","span":{"begin":3169,"end":3258}},{"label":"th","span":{"begin":3169,"end":3175}},{"label":"th","span":{"begin":3177,"end":3193}},{"label":"th","span":{"begin":3195,"end":3247}},{"label":"th","span":{"begin":3249,"end":3258}},{"label":"tr","span":{"begin":3259,"end":3302}},{"label":"td","span":{"begin":3259,"end":3261}},{"label":"td","span":{"begin":3263,"end":3288}},{"label":"td","span":{"begin":3290,"end":3295}},{"label":"td","span":{"begin":3297,"end":3302}},{"label":"tr","span":{"begin":3303,"end":3346}},{"label":"td","span":{"begin":3303,"end":3305}},{"label":"td","span":{"begin":3307,"end":3332}},{"label":"td","span":{"begin":3334,"end":3339}},{"label":"td","span":{"begin":3341,"end":3346}},{"label":"tr","span":{"begin":3347,"end":3390}},{"label":"td","span":{"begin":3347,"end":3349}},{"label":"td","span":{"begin":3351,"end":3376}},{"label":"td","span":{"begin":3378,"end":3383}},{"label":"td","span":{"begin":3385,"end":3390}},{"label":"tr","span":{"begin":3391,"end":3434}},{"label":"td","span":{"begin":3391,"end":3393}},{"label":"td","span":{"begin":3395,"end":3420}},{"label":"td","span":{"begin":3422,"end":3427}},{"label":"td","span":{"begin":3429,"end":3434}},{"label":"tr","span":{"begin":3435,"end":3478}},{"label":"td","span":{"begin":3435,"end":3437}},{"label":"td","span":{"begin":3439,"end":3464}},{"label":"td","span":{"begin":3466,"end":3471}},{"label":"td","span":{"begin":3473,"end":3478}},{"label":"tr","span":{"begin":3479,"end":3522}},{"label":"td","span":{"begin":3479,"end":3481}},{"label":"td","span":{"begin":3483,"end":3508}},{"label":"td","span":{"begin":3510,"end":3515}},{"label":"td","span":{"begin":3517,"end":3522}},{"label":"tr","span":{"begin":3523,"end":3566}},{"label":"td","span":{"begin":3523,"end":3525}},{"label":"td","span":{"begin":3527,"end":3552}},{"label":"td","span":{"begin":3554,"end":3559}},{"label":"td","span":{"begin":3561,"end":3566}},{"label":"tr","span":{"begin":3567,"end":3610}},{"label":"td","span":{"begin":3567,"end":3569}},{"label":"td","span":{"begin":3571,"end":3596}},{"label":"td","span":{"begin":3598,"end":3603}},{"label":"td","span":{"begin":3605,"end":3610}},{"label":"tr","span":{"begin":3611,"end":3652}},{"label":"td","span":{"begin":3611,"end":3613}},{"label":"td","span":{"begin":3615,"end":3640}},{"label":"td","span":{"begin":3642,"end":3647}},{"label":"td","span":{"begin":3649,"end":3652}},{"label":"tr","span":{"begin":3653,"end":3694}},{"label":"td","span":{"begin":3653,"end":3655}},{"label":"td","span":{"begin":3657,"end":3682}},{"label":"td","span":{"begin":3684,"end":3689}},{"label":"td","span":{"begin":3691,"end":3694}},{"label":"tr","span":{"begin":3695,"end":3738}},{"label":"td","span":{"begin":3695,"end":3697}},{"label":"td","span":{"begin":3699,"end":3724}},{"label":"td","span":{"begin":3726,"end":3731}},{"label":"td","span":{"begin":3733,"end":3738}},{"label":"tr","span":{"begin":3739,"end":3782}},{"label":"td","span":{"begin":3739,"end":3741}},{"label":"td","span":{"begin":3743,"end":3768}},{"label":"td","span":{"begin":3770,"end":3775}},{"label":"td","span":{"begin":3777,"end":3782}},{"label":"tr","span":{"begin":3783,"end":3826}},{"label":"td","span":{"begin":3783,"end":3785}},{"label":"td","span":{"begin":3787,"end":3812}},{"label":"td","span":{"begin":3814,"end":3819}},{"label":"td","span":{"begin":3821,"end":3826}},{"label":"tr","span":{"begin":3827,"end":3870}},{"label":"td","span":{"begin":3827,"end":3829}},{"label":"td","span":{"begin":3831,"end":3856}},{"label":"td","span":{"begin":3858,"end":3863}},{"label":"td","span":{"begin":3865,"end":3870}},{"label":"tr","span":{"begin":3871,"end":3914}},{"label":"td","span":{"begin":3871,"end":3873}},{"label":"td","span":{"begin":3875,"end":3900}},{"label":"td","span":{"begin":3902,"end":3907}},{"label":"td","span":{"begin":3909,"end":3914}},{"label":"tr","span":{"begin":3915,"end":3958}},{"label":"td","span":{"begin":3915,"end":3917}},{"label":"td","span":{"begin":3919,"end":3944}},{"label":"td","span":{"begin":3946,"end":3951}},{"label":"td","span":{"begin":3953,"end":3958}},{"label":"tr","span":{"begin":3959,"end":4002}},{"label":"td","span":{"begin":3959,"end":3961}},{"label":"td","span":{"begin":3963,"end":3988}},{"label":"td","span":{"begin":3990,"end":3995}},{"label":"td","span":{"begin":3997,"end":4002}},{"label":"tr","span":{"begin":4003,"end":4046}},{"label":"td","span":{"begin":4003,"end":4005}},{"label":"td","span":{"begin":4007,"end":4032}},{"label":"td","span":{"begin":4034,"end":4039}},{"label":"td","span":{"begin":4041,"end":4046}},{"label":"tr","span":{"begin":4047,"end":4091}},{"label":"td","span":{"begin":4047,"end":4050}},{"label":"td","span":{"begin":4052,"end":4077}},{"label":"td","span":{"begin":4079,"end":4084}},{"label":"td","span":{"begin":4086,"end":4091}},{"label":"tr","span":{"begin":4092,"end":4136}},{"label":"td","span":{"begin":4092,"end":4095}},{"label":"td","span":{"begin":4097,"end":4122}},{"label":"td","span":{"begin":4124,"end":4129}},{"label":"td","span":{"begin":4131,"end":4136}},{"label":"tr","span":{"begin":4137,"end":4180}},{"label":"td","span":{"begin":4137,"end":4140}},{"label":"td","span":{"begin":4142,"end":4167}},{"label":"td","span":{"begin":4169,"end":4173}},{"label":"td","span":{"begin":4175,"end":4180}},{"label":"tr","span":{"begin":4181,"end":4225}},{"label":"td","span":{"begin":4181,"end":4184}},{"label":"td","span":{"begin":4186,"end":4211}},{"label":"td","span":{"begin":4213,"end":4218}},{"label":"td","span":{"begin":4220,"end":4225}},{"label":"tr","span":{"begin":4226,"end":4270}},{"label":"td","span":{"begin":4226,"end":4229}},{"label":"td","span":{"begin":4231,"end":4256}},{"label":"td","span":{"begin":4258,"end":4263}},{"label":"td","span":{"begin":4265,"end":4270}},{"label":"tr","span":{"begin":4271,"end":4315}},{"label":"td","span":{"begin":4271,"end":4274}},{"label":"td","span":{"begin":4276,"end":4301}},{"label":"td","span":{"begin":4303,"end":4308}},{"label":"td","span":{"begin":4310,"end":4315}},{"label":"tr","span":{"begin":4316,"end":4359}},{"label":"td","span":{"begin":4316,"end":4319}},{"label":"td","span":{"begin":4321,"end":4346}},{"label":"td","span":{"begin":4348,"end":4352}},{"label":"td","span":{"begin":4354,"end":4359}},{"label":"tr","span":{"begin":4360,"end":4403}},{"label":"td","span":{"begin":4360,"end":4363}},{"label":"td","span":{"begin":4365,"end":4390}},{"label":"td","span":{"begin":4392,"end":4396}},{"label":"td","span":{"begin":4398,"end":4403}},{"label":"tr","span":{"begin":4404,"end":4447}},{"label":"td","span":{"begin":4404,"end":4407}},{"label":"td","span":{"begin":4409,"end":4434}},{"label":"td","span":{"begin":4436,"end":4440}},{"label":"td","span":{"begin":4442,"end":4447}},{"label":"tr","span":{"begin":4448,"end":4491}},{"label":"td","span":{"begin":4448,"end":4451}},{"label":"td","span":{"begin":4453,"end":4478}},{"label":"td","span":{"begin":4480,"end":4484}},{"label":"td","span":{"begin":4486,"end":4491}},{"label":"tr","span":{"begin":4492,"end":4535}},{"label":"td","span":{"begin":4492,"end":4495}},{"label":"td","span":{"begin":4497,"end":4522}},{"label":"td","span":{"begin":4524,"end":4528}},{"label":"td","span":{"begin":4530,"end":4535}},{"label":"tr","span":{"begin":4536,"end":4579}},{"label":"td","span":{"begin":4536,"end":4539}},{"label":"td","span":{"begin":4541,"end":4566}},{"label":"td","span":{"begin":4568,"end":4572}},{"label":"td","span":{"begin":4574,"end":4579}},{"label":"tr","span":{"begin":4580,"end":4623}},{"label":"td","span":{"begin":4580,"end":4583}},{"label":"td","span":{"begin":4585,"end":4610}},{"label":"td","span":{"begin":4612,"end":4616}},{"label":"td","span":{"begin":4618,"end":4623}},{"label":"tr","span":{"begin":4624,"end":4667}},{"label":"td","span":{"begin":4624,"end":4627}},{"label":"td","span":{"begin":4629,"end":4654}},{"label":"td","span":{"begin":4656,"end":4660}},{"label":"td","span":{"begin":4662,"end":4667}},{"label":"tr","span":{"begin":4668,"end":4710}},{"label":"td","span":{"begin":4668,"end":4671}},{"label":"td","span":{"begin":4673,"end":4698}},{"label":"td","span":{"begin":4700,"end":4703}},{"label":"td","span":{"begin":4705,"end":4710}},{"label":"tr","span":{"begin":4711,"end":4754}},{"label":"td","span":{"begin":4711,"end":4714}},{"label":"td","span":{"begin":4716,"end":4741}},{"label":"td","span":{"begin":4743,"end":4747}},{"label":"td","span":{"begin":4749,"end":4754}},{"label":"tr","span":{"begin":4755,"end":4795}},{"label":"td","span":{"begin":4755,"end":4758}},{"label":"td","span":{"begin":4760,"end":4785}},{"label":"td","span":{"begin":4787,"end":4788}},{"label":"td","span":{"begin":4790,"end":4795}},{"label":"tr","span":{"begin":4796,"end":4839}},{"label":"td","span":{"begin":4796,"end":4799}},{"label":"td","span":{"begin":4801,"end":4826}},{"label":"td","span":{"begin":4828,"end":4832}},{"label":"td","span":{"begin":4834,"end":4839}},{"label":"tr","span":{"begin":4840,"end":4891}},{"label":"td","span":{"begin":4840,"end":4845}},{"label":"td","span":{"begin":4847,"end":4872}},{"label":"td","span":{"begin":4874,"end":4882}},{"label":"td","span":{"begin":4884,"end":4891}},{"label":"tr","span":{"begin":4892,"end":4951}},{"label":"td","span":{"begin":4892,"end":4894}},{"label":"td","span":{"begin":4896,"end":4933}},{"label":"td","span":{"begin":4935,"end":4942}},{"label":"td","span":{"begin":4944,"end":4951}},{"label":"tr","span":{"begin":4952,"end":5005}},{"label":"td","span":{"begin":4952,"end":4957}},{"label":"td","span":{"begin":4959,"end":4984}},{"label":"td","span":{"begin":4986,"end":4996}},{"label":"td","span":{"begin":4998,"end":5005}},{"label":"tr","span":{"begin":5006,"end":5053}},{"label":"td","span":{"begin":5006,"end":5010}},{"label":"td","span":{"begin":5012,"end":5032}},{"label":"td","span":{"begin":5034,"end":5044}},{"label":"td","span":{"begin":5046,"end":5053}},{"label":"tr","span":{"begin":5054,"end":5107}},{"label":"td","span":{"begin":5054,"end":5057}},{"label":"td","span":{"begin":5059,"end":5089}},{"label":"td","span":{"begin":5091,"end":5098}},{"label":"td","span":{"begin":5100,"end":5107}},{"label":"tr","span":{"begin":5108,"end":5158}},{"label":"td","span":{"begin":5108,"end":5113}},{"label":"td","span":{"begin":5115,"end":5140}},{"label":"td","span":{"begin":5142,"end":5149}},{"label":"td","span":{"begin":5151,"end":5158}},{"label":"tr","span":{"begin":5159,"end":5206}},{"label":"td","span":{"begin":5159,"end":5163}},{"label":"td","span":{"begin":5165,"end":5185}},{"label":"td","span":{"begin":5187,"end":5197}},{"label":"td","span":{"begin":5199,"end":5206}},{"label":"tr","span":{"begin":5207,"end":5260}},{"label":"td","span":{"begin":5207,"end":5212}},{"label":"td","span":{"begin":5214,"end":5239}},{"label":"td","span":{"begin":5241,"end":5251}},{"label":"td","span":{"begin":5253,"end":5260}},{"label":"tr","span":{"begin":5261,"end":5313}},{"label":"td","span":{"begin":5261,"end":5265}},{"label":"td","span":{"begin":5267,"end":5292}},{"label":"td","span":{"begin":5294,"end":5304}},{"label":"td","span":{"begin":5306,"end":5313}},{"label":"table-wrap-foot","span":{"begin":5314,"end":5356}},{"label":"footnote","span":{"begin":5314,"end":5356}},{"label":"label","span":{"begin":5314,"end":5315}},{"label":"p","span":{"begin":5317,"end":5356}},{"label":"figure","span":{"begin":5357,"end":5965}},{"label":"label","span":{"begin":5357,"end":5362}},{"label":"caption","span":{"begin":5364,"end":5965}},{"label":"p","span":{"begin":5364,"end":5965}},{"label":"p","span":{"begin":5966,"end":6231}},{"label":"title","span":{"begin":6233,"end":6251}}],"tracks":[{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T6","span":{"begin":272,"end":278},"obj":"Body_part"},{"id":"T7","span":{"begin":324,"end":328},"obj":"Body_part"},{"id":"T8","span":{"begin":472,"end":484},"obj":"Body_part"},{"id":"T9","span":{"begin":572,"end":576},"obj":"Body_part"},{"id":"T10","span":{"begin":655,"end":660},"obj":"Body_part"},{"id":"T11","span":{"begin":711,"end":734},"obj":"Body_part"},{"id":"T12","span":{"begin":1145,"end":1148},"obj":"Body_part"},{"id":"T13","span":{"begin":1195,"end":1198},"obj":"Body_part"},{"id":"T14","span":{"begin":1229,"end":1232},"obj":"Body_part"},{"id":"T15","span":{"begin":1605,"end":1608},"obj":"Body_part"},{"id":"T16","span":{"begin":1769,"end":1772},"obj":"Body_part"},{"id":"T17","span":{"begin":2242,"end":2248},"obj":"Body_part"},{"id":"T18","span":{"begin":2438,"end":2444},"obj":"Body_part"},{"id":"T19","span":{"begin":2580,"end":2586},"obj":"Body_part"},{"id":"T20","span":{"begin":2954,"end":2964},"obj":"Body_part"},{"id":"T21","span":{"begin":3138,"end":3144},"obj":"Body_part"},{"id":"T22","span":{"begin":3203,"end":3213},"obj":"Body_part"},{"id":"T23","span":{"begin":5417,"end":5424},"obj":"Body_part"},{"id":"T24","span":{"begin":5439,"end":5446},"obj":"Body_part"},{"id":"T25","span":{"begin":5984,"end":5990},"obj":"Body_part"},{"id":"T26","span":{"begin":6111,"end":6117},"obj":"Body_part"},{"id":"T27","span":{"begin":6265,"end":6271},"obj":"Body_part"}],"attributes":[{"id":"A6","pred":"fma_id","subj":"T6","obj":"http://purl.org/sig/ont/fma/fma84116"},{"id":"A7","pred":"fma_id","subj":"T7","obj":"http://purl.org/sig/ont/fma/fma74402"},{"id":"A8","pred":"fma_id","subj":"T8","obj":"http://purl.org/sig/ont/fma/fma62925"},{"id":"A9","pred":"fma_id","subj":"T9","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A10","pred":"fma_id","subj":"T10","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A11","pred":"fma_id","subj":"T11","obj":"http://purl.org/sig/ont/fma/fma45661"},{"id":"A12","pred":"fma_id","subj":"T12","obj":"http://purl.org/sig/ont/fma/fma67095"},{"id":"A13","pred":"fma_id","subj":"T13","obj":"http://purl.org/sig/ont/fma/fma67095"},{"id":"A14","pred":"fma_id","subj":"T14","obj":"http://purl.org/sig/ont/fma/fma67095"},{"id":"A15","pred":"fma_id","subj":"T15","obj":"http://purl.org/sig/ont/fma/fma74412"},{"id":"A16","pred":"fma_id","subj":"T16","obj":"http://purl.org/sig/ont/fma/fma74412"},{"id":"A17","pred":"fma_id","subj":"T17","obj":"http://purl.org/sig/ont/fma/fma84116"},{"id":"A18","pred":"fma_id","subj":"T18","obj":"http://purl.org/sig/ont/fma/fma84116"},{"id":"A19","pred":"fma_id","subj":"T19","obj":"http://purl.org/sig/ont/fma/fma84116"},{"id":"A20","pred":"fma_id","subj":"T20","obj":"http://purl.org/sig/ont/fma/fma82740"},{"id":"A21","pred":"fma_id","subj":"T21","obj":"http://purl.org/sig/ont/fma/fma84116"},{"id":"A22","pred":"fma_id","subj":"T22","obj":"http://purl.org/sig/ont/fma/fma82740"},{"id":"A23","pred":"fma_id","subj":"T23","obj":"http://purl.org/sig/ont/fma/fma84116"},{"id":"A24","pred":"fma_id","subj":"T24","obj":"http://purl.org/sig/ont/fma/fma84116"},{"id":"A25","pred":"fma_id","subj":"T25","obj":"http://purl.org/sig/ont/fma/fma84116"},{"id":"A26","pred":"fma_id","subj":"T26","obj":"http://purl.org/sig/ont/fma/fma84116"},{"id":"A27","pred":"fma_id","subj":"T27","obj":"http://purl.org/sig/ont/fma/fma84116"},{"subj":"T6","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T7","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T8","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T9","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T10","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T11","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T12","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T13","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T14","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T15","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T16","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T17","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T18","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T19","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T20","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T21","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T22","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T23","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T24","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T25","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T26","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T27","pred":"source","obj":"LitCovid-PD-FMA-UBERON"}]},{"project":"LitCovid-PD-UBERON","denotations":[{"id":"T1","span":{"begin":711,"end":734},"obj":"Body_part"},{"id":"T2","span":{"begin":717,"end":734},"obj":"Body_part"}],"attributes":[{"id":"A1","pred":"uberon_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/UBERON_0001557"},{"id":"A2","pred":"uberon_id","subj":"T2","obj":"http://purl.obolibrary.org/obo/UBERON_0000065"},{"subj":"T1","pred":"source","obj":"LitCovid-PD-UBERON"},{"subj":"T2","pred":"source","obj":"LitCovid-PD-UBERON"}]},{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T5","span":{"begin":191,"end":202},"obj":"Disease"},{"id":"T6","span":{"begin":500,"end":533},"obj":"Disease"},{"id":"T7","span":{"begin":547,"end":555},"obj":"Disease"},{"id":"T8","span":{"begin":717,"end":744},"obj":"Disease"},{"id":"T9","span":{"begin":735,"end":744},"obj":"Disease"},{"id":"T10","span":{"begin":873,"end":894},"obj":"Disease"},{"id":"T11","span":{"begin":885,"end":894},"obj":"Disease"},{"id":"T12","span":{"begin":1999,"end":2002},"obj":"Disease"}],"attributes":[{"id":"A5","pred":"mondo_id","subj":"T5","obj":"http://purl.obolibrary.org/obo/MONDO_0005709"},{"id":"A6","pred":"mondo_id","subj":"T6","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A7","pred":"mondo_id","subj":"T7","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A8","pred":"mondo_id","subj":"T8","obj":"http://purl.obolibrary.org/obo/MONDO_0024355"},{"id":"A9","pred":"mondo_id","subj":"T9","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"},{"id":"A10","pred":"mondo_id","subj":"T10","obj":"http://purl.obolibrary.org/obo/MONDO_0024355"},{"id":"A11","pred":"mondo_id","subj":"T11","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"},{"id":"A12","pred":"mondo_id","subj":"T12","obj":"http://purl.obolibrary.org/obo/MONDO_0004315"},{"subj":"T5","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T6","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T7","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T8","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T9","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T10","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T11","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T12","pred":"source","obj":"LitCovid-PD-MONDO"}]},{"project":"LitCovid-PD-CLO","denotations":[{"id":"T4","span":{"begin":13,"end":18},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9606"},{"id":"T5","span":{"begin":51,"end":52},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T6","span":{"begin":301,"end":303},"obj":"http://purl.obolibrary.org/obo/CLO_0050509"},{"id":"T7","span":{"begin":304,"end":306},"obj":"http://purl.obolibrary.org/obo/CLO_0007074"},{"id":"T8","span":{"begin":304,"end":306},"obj":"http://purl.obolibrary.org/obo/CLO_0051988"},{"id":"T9","span":{"begin":312,"end":313},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T10","span":{"begin":324,"end":328},"obj":"http://purl.obolibrary.org/obo/OGG_0000000002"},{"id":"T11","span":{"begin":376,"end":384},"obj":"http://purl.obolibrary.org/obo/UBERON_0000158"},{"id":"T12","span":{"begin":412,"end":413},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T13","span":{"begin":572,"end":576},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T14","span":{"begin":628,"end":632},"obj":"http://purl.obolibrary.org/obo/CLO_0053799"},{"id":"T15","span":{"begin":655,"end":660},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T16","span":{"begin":693,"end":694},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T17","span":{"begin":749,"end":752},"obj":"http://purl.obolibrary.org/obo/CLO_0051582"},{"id":"T18","span":{"begin":919,"end":923},"obj":"http://purl.obolibrary.org/obo/CLO_0001185"},{"id":"T19","span":{"begin":976,"end":981},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9606"},{"id":"T20","span":{"begin":1180,"end":1181},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T21","span":{"begin":1322,"end":1323},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T22","span":{"begin":1418,"end":1419},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T23","span":{"begin":1438,"end":1439},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T24","span":{"begin":1468,"end":1469},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T25","span":{"begin":1931,"end":1932},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T26","span":{"begin":1944,"end":1954},"obj":"http://purl.obolibrary.org/obo/OBI_0000968"},{"id":"T27","span":{"begin":1999,"end":2002},"obj":"http://purl.obolibrary.org/obo/CLO_0002494"},{"id":"T28","span":{"begin":2138,"end":2139},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T29","span":{"begin":3003,"end":3008},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_10239"},{"id":"T30","span":{"begin":4892,"end":4894},"obj":"http://purl.obolibrary.org/obo/CLO_0001547"},{"id":"T31","span":{"begin":5314,"end":5315},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"}],"attributes":[{"subj":"T4","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T5","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T6","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T7","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T8","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T9","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T10","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T11","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T12","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T13","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T14","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T15","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T16","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T17","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T18","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T19","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T20","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T21","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T22","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T23","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T24","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T25","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T26","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T27","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T28","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T29","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T30","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T31","pred":"source","obj":"LitCovid-PD-CLO"}]},{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T1","span":{"begin":472,"end":484},"obj":"Chemical"},{"id":"T2","span":{"begin":587,"end":598},"obj":"Chemical"},{"id":"T3","span":{"begin":1605,"end":1608},"obj":"Chemical"},{"id":"T4","span":{"begin":1769,"end":1772},"obj":"Chemical"},{"id":"T5","span":{"begin":2954,"end":2964},"obj":"Chemical"},{"id":"T6","span":{"begin":3067,"end":3071},"obj":"Chemical"},{"id":"T7","span":{"begin":3203,"end":3213},"obj":"Chemical"},{"id":"T8","span":{"begin":3959,"end":3961},"obj":"Chemical"},{"id":"T9","span":{"begin":4892,"end":4894},"obj":"Chemical"},{"id":"T12","span":{"begin":5054,"end":5057},"obj":"Chemical"},{"id":"T13","span":{"begin":5704,"end":5708},"obj":"Chemical"}],"attributes":[{"id":"A1","pred":"chebi_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/CHEBI_17089"},{"id":"A2","pred":"chebi_id","subj":"T2","obj":"http://purl.obolibrary.org/obo/CHEBI_48433"},{"id":"A3","pred":"chebi_id","subj":"T3","obj":"http://purl.obolibrary.org/obo/CHEBI_16991"},{"id":"A4","pred":"chebi_id","subj":"T4","obj":"http://purl.obolibrary.org/obo/CHEBI_16991"},{"id":"A5","pred":"chebi_id","subj":"T5","obj":"http://purl.obolibrary.org/obo/CHEBI_36976"},{"id":"A6","pred":"chebi_id","subj":"T6","obj":"http://purl.obolibrary.org/obo/CHEBI_6617"},{"id":"A7","pred":"chebi_id","subj":"T7","obj":"http://purl.obolibrary.org/obo/CHEBI_36976"},{"id":"A8","pred":"chebi_id","subj":"T8","obj":"http://purl.obolibrary.org/obo/CHEBI_24061"},{"id":"A9","pred":"chebi_id","subj":"T9","obj":"http://purl.obolibrary.org/obo/CHEBI_28971"},{"id":"A10","pred":"chebi_id","subj":"T9","obj":"http://purl.obolibrary.org/obo/CHEBI_73393"},{"id":"A11","pred":"chebi_id","subj":"T9","obj":"http://purl.obolibrary.org/obo/CHEBI_81686"},{"id":"A12","pred":"chebi_id","subj":"T12","obj":"http://purl.obolibrary.org/obo/CHEBI_73323"},{"id":"A13","pred":"chebi_id","subj":"T13","obj":"http://purl.obolibrary.org/obo/CHEBI_6617"},{"subj":"T1","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T2","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T3","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T4","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T5","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T6","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T7","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T8","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T9","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T12","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T13","pred":"source","obj":"LitCovid-PD-CHEBI"}]},{"project":"LitCovid-PD-HP","denotations":[{"id":"T4","span":{"begin":711,"end":744},"obj":"Phenotype"},{"id":"T5","span":{"begin":873,"end":894},"obj":"Phenotype"},{"id":"T6","span":{"begin":6036,"end":6055},"obj":"Phenotype"}],"attributes":[{"id":"A4","pred":"hp_id","subj":"T4","obj":"http://purl.obolibrary.org/obo/HP_0002788"},{"id":"A5","pred":"hp_id","subj":"T5","obj":"http://purl.obolibrary.org/obo/HP_0011947"},{"id":"A6","pred":"hp_id","subj":"T6","obj":"http://purl.obolibrary.org/obo/HP_0002086"},{"subj":"T4","pred":"source","obj":"LitCovid-PD-HP"},{"subj":"T5","pred":"source","obj":"LitCovid-PD-HP"},{"subj":"T6","pred":"source","obj":"LitCovid-PD-HP"}]},{"project":"LitCovid-PD-GO-BP","denotations":[{"id":"T1","span":{"begin":428,"end":435},"obj":"http://purl.obolibrary.org/obo/GO_0009606"},{"id":"T2","span":{"begin":639,"end":654},"obj":"http://purl.obolibrary.org/obo/GO_0044409"},{"id":"T3","span":{"begin":1324,"end":1345},"obj":"http://purl.obolibrary.org/obo/GO_0001171"},{"id":"T4","span":{"begin":1332,"end":1345},"obj":"http://purl.obolibrary.org/obo/GO_0006351"},{"id":"T5","span":{"begin":1398,"end":1411},"obj":"http://purl.obolibrary.org/obo/GO_0003968"},{"id":"T6","span":{"begin":1398,"end":1411},"obj":"http://purl.obolibrary.org/obo/GO_0003899"},{"id":"T7","span":{"begin":1543,"end":1558},"obj":"http://purl.obolibrary.org/obo/GO_0003887"},{"id":"T8","span":{"begin":1605,"end":1618},"obj":"http://purl.obolibrary.org/obo/GO_0071897"},{"id":"T9","span":{"begin":1609,"end":1618},"obj":"http://purl.obolibrary.org/obo/GO_0009058"}],"attributes":[{"subj":"T1","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T2","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T3","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T4","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T5","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T6","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T7","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T8","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T9","pred":"source","obj":"LitCovid-PD-GO-BP"}]},{"project":"LitCovid-sentences","denotations":[{"id":"T12","span":{"begin":0,"end":12},"obj":"Sentence"},{"id":"T13","span":{"begin":13,"end":150},"obj":"Sentence"},{"id":"T14","span":{"begin":151,"end":267},"obj":"Sentence"},{"id":"T15","span":{"begin":268,"end":415},"obj":"Sentence"},{"id":"T16","span":{"begin":416,"end":485},"obj":"Sentence"},{"id":"T17","span":{"begin":486,"end":778},"obj":"Sentence"},{"id":"T18","span":{"begin":779,"end":924},"obj":"Sentence"},{"id":"T19","span":{"begin":925,"end":1084},"obj":"Sentence"},{"id":"T20","span":{"begin":1085,"end":1536},"obj":"Sentence"},{"id":"T21","span":{"begin":1537,"end":1619},"obj":"Sentence"},{"id":"T22","span":{"begin":1620,"end":1759},"obj":"Sentence"},{"id":"T23","span":{"begin":1760,"end":1819},"obj":"Sentence"},{"id":"T24","span":{"begin":1820,"end":2035},"obj":"Sentence"},{"id":"T25","span":{"begin":2036,"end":2098},"obj":"Sentence"},{"id":"T26","span":{"begin":2099,"end":2233},"obj":"Sentence"},{"id":"T27","span":{"begin":2234,"end":2314},"obj":"Sentence"},{"id":"T28","span":{"begin":2315,"end":2556},"obj":"Sentence"},{"id":"T29","span":{"begin":2557,"end":2842},"obj":"Sentence"},{"id":"T30","span":{"begin":2843,"end":3107},"obj":"Sentence"},{"id":"T31","span":{"begin":3108,"end":3168},"obj":"Sentence"},{"id":"T32","span":{"begin":3169,"end":3258},"obj":"Sentence"},{"id":"T33","span":{"begin":3259,"end":3302},"obj":"Sentence"},{"id":"T34","span":{"begin":3303,"end":3346},"obj":"Sentence"},{"id":"T35","span":{"begin":3347,"end":3390},"obj":"Sentence"},{"id":"T36","span":{"begin":3391,"end":3434},"obj":"Sentence"},{"id":"T37","span":{"begin":3435,"end":3478},"obj":"Sentence"},{"id":"T38","span":{"begin":3479,"end":3522},"obj":"Sentence"},{"id":"T39","span":{"begin":3523,"end":3566},"obj":"Sentence"},{"id":"T40","span":{"begin":3567,"end":3610},"obj":"Sentence"},{"id":"T41","span":{"begin":3611,"end":3652},"obj":"Sentence"},{"id":"T42","span":{"begin":3653,"end":3694},"obj":"Sentence"},{"id":"T43","span":{"begin":3695,"end":3738},"obj":"Sentence"},{"id":"T44","span":{"begin":3739,"end":3782},"obj":"Sentence"},{"id":"T45","span":{"begin":3783,"end":3826},"obj":"Sentence"},{"id":"T46","span":{"begin":3827,"end":3870},"obj":"Sentence"},{"id":"T47","span":{"begin":3871,"end":3914},"obj":"Sentence"},{"id":"T48","span":{"begin":3915,"end":3958},"obj":"Sentence"},{"id":"T49","span":{"begin":3959,"end":4002},"obj":"Sentence"},{"id":"T50","span":{"begin":4003,"end":4046},"obj":"Sentence"},{"id":"T51","span":{"begin":4047,"end":4091},"obj":"Sentence"},{"id":"T52","span":{"begin":4092,"end":4136},"obj":"Sentence"},{"id":"T53","span":{"begin":4137,"end":4180},"obj":"Sentence"},{"id":"T54","span":{"begin":4181,"end":4225},"obj":"Sentence"},{"id":"T55","span":{"begin":4226,"end":4270},"obj":"Sentence"},{"id":"T56","span":{"begin":4271,"end":4315},"obj":"Sentence"},{"id":"T57","span":{"begin":4316,"end":4359},"obj":"Sentence"},{"id":"T58","span":{"begin":4360,"end":4403},"obj":"Sentence"},{"id":"T59","span":{"begin":4404,"end":4447},"obj":"Sentence"},{"id":"T60","span":{"begin":4448,"end":4491},"obj":"Sentence"},{"id":"T61","span":{"begin":4492,"end":4535},"obj":"Sentence"},{"id":"T62","span":{"begin":4536,"end":4579},"obj":"Sentence"},{"id":"T63","span":{"begin":4580,"end":4623},"obj":"Sentence"},{"id":"T64","span":{"begin":4624,"end":4667},"obj":"Sentence"},{"id":"T65","span":{"begin":4668,"end":4710},"obj":"Sentence"},{"id":"T66","span":{"begin":4711,"end":4754},"obj":"Sentence"},{"id":"T67","span":{"begin":4755,"end":4795},"obj":"Sentence"},{"id":"T68","span":{"begin":4796,"end":4839},"obj":"Sentence"},{"id":"T69","span":{"begin":4840,"end":4891},"obj":"Sentence"},{"id":"T70","span":{"begin":4892,"end":4951},"obj":"Sentence"},{"id":"T71","span":{"begin":4952,"end":5005},"obj":"Sentence"},{"id":"T72","span":{"begin":5006,"end":5053},"obj":"Sentence"},{"id":"T73","span":{"begin":5054,"end":5107},"obj":"Sentence"},{"id":"T74","span":{"begin":5108,"end":5158},"obj":"Sentence"},{"id":"T75","span":{"begin":5159,"end":5206},"obj":"Sentence"},{"id":"T76","span":{"begin":5207,"end":5260},"obj":"Sentence"},{"id":"T77","span":{"begin":5261,"end":5313},"obj":"Sentence"},{"id":"T78","span":{"begin":5314,"end":5356},"obj":"Sentence"},{"id":"T79","span":{"begin":5357,"end":5425},"obj":"Sentence"},{"id":"T80","span":{"begin":5426,"end":5606},"obj":"Sentence"},{"id":"T81","span":{"begin":5607,"end":5746},"obj":"Sentence"},{"id":"T82","span":{"begin":5747,"end":5800},"obj":"Sentence"},{"id":"T83","span":{"begin":5801,"end":5890},"obj":"Sentence"},{"id":"T84","span":{"begin":5891,"end":5965},"obj":"Sentence"},{"id":"T85","span":{"begin":5966,"end":6097},"obj":"Sentence"},{"id":"T86","span":{"begin":6098,"end":6231},"obj":"Sentence"},{"id":"T87","span":{"begin":6233,"end":6251},"obj":"Sentence"},{"id":"T88","span":{"begin":6252,"end":6441},"obj":"Sentence"},{"id":"T89","span":{"begin":6442,"end":6543},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"T12","pred":"source","obj":"LitCovid-sentences"},{"subj":"T13","pred":"source","obj":"LitCovid-sentences"},{"subj":"T14","pred":"source","obj":"LitCovid-sentences"},{"subj":"T15","pred":"source","obj":"LitCovid-sentences"},{"subj":"T16","pred":"source","obj":"LitCovid-sentences"},{"subj":"T17","pred":"source","obj":"LitCovid-sentences"},{"subj":"T18","pred":"source","obj":"LitCovid-sentences"},{"subj":"T19","pred":"source","obj":"LitCovid-sentences"},{"subj":"T20","pred":"source","obj":"LitCovid-sentences"},{"subj":"T21","pred":"source","obj":"LitCovid-sentences"},{"subj":"T22","pred":"source","obj":"LitCovid-sentences"},{"subj":"T23","pred":"source","obj":"LitCovid-sentences"},{"subj":"T24","pred":"source","obj":"LitCovid-sentences"},{"subj":"T25","pred":"source","obj":"LitCovid-sentences"},{"subj":"T26","pred":"source","obj":"LitCovid-sentences"},{"subj":"T27","pred":"source","obj":"LitCovid-sentences"},{"subj":"T28","pred":"source","obj":"LitCovid-sentences"},{"subj":"T29","pred":"source","obj":"LitCovid-sentences"},{"subj":"T30","pred":"source","obj":"LitCovid-sentences"},{"subj":"T31","pred":"source","obj":"LitCovid-sentences"},{"subj":"T32","pred":"source","obj":"LitCovid-sentences"},{"subj":"T33","pred":"source","obj":"LitCovid-sentences"},{"subj":"T34","pred":"source","obj":"LitCovid-sentences"},{"subj":"T35","pred":"source","obj":"LitCovid-sentences"},{"subj":"T36","pred":"source","obj":"LitCovid-sentences"},{"subj":"T37","pred":"source","obj":"LitCovid-sentences"},{"subj":"T38","pred":"source","obj":"LitCovid-sentences"},{"subj":"T39","pred":"source","obj":"LitCovid-sentences"},{"subj":"T40","pred":"source","obj":"LitCovid-sentences"},{"subj":"T41","pred":"source","obj":"LitCovid-sentences"},{"subj":"T42","pred":"source","obj":"LitCovid-sentences"},{"subj":"T43","pred":"source","obj":"LitCovid-sentences"},{"subj":"T44","pred":"source","obj":"LitCovid-sentences"},{"subj":"T45","pred":"source","obj":"LitCovid-sentences"},{"subj":"T46","pred":"source","obj":"LitCovid-sentences"},{"subj":"T47","pred":"source","obj":"LitCovid-sentences"},{"subj":"T48","pred":"source","obj":"LitCovid-sentences"},{"subj":"T49","pred":"source","obj":"LitCovid-sentences"},{"subj":"T50","pred":"source","obj":"LitCovid-sentences"},{"subj":"T51","pred":"source","obj":"LitCovid-sentences"},{"subj":"T52","pred":"source","obj":"LitCovid-sentences"},{"subj":"T53","pred":"source","obj":"LitCovid-sentences"},{"subj":"T54","pred":"source","obj":"LitCovid-sentences"},{"subj":"T55","pred":"source","obj":"LitCovid-sentences"},{"subj":"T56","pred":"source","obj":"LitCovid-sentences"},{"subj":"T57","pred":"source","obj":"LitCovid-sentences"},{"subj":"T58","pred":"source","obj":"LitCovid-sentences"},{"subj":"T59","pred":"source","obj":"LitCovid-sentences"},{"subj":"T60","pred":"source","obj":"LitCovid-sentences"},{"subj":"T61","pred":"source","obj":"LitCovid-sentences"},{"subj":"T62","pred":"source","obj":"LitCovid-sentences"},{"subj":"T63","pred":"source","obj":"LitCovid-sentences"},{"subj":"T64","pred":"source","obj":"LitCovid-sentences"},{"subj":"T65","pred":"source","obj":"LitCovid-sentences"},{"subj":"T66","pred":"source","obj":"LitCovid-sentences"},{"subj":"T67","pred":"source","obj":"LitCovid-sentences"},{"subj":"T68","pred":"source","obj":"LitCovid-sentences"},{"subj":"T69","pred":"source","obj":"LitCovid-sentences"},{"subj":"T70","pred":"source","obj":"LitCovid-sentences"},{"subj":"T71","pred":"source","obj":"LitCovid-sentences"},{"subj":"T72","pred":"source","obj":"LitCovid-sentences"},{"subj":"T73","pred":"source","obj":"LitCovid-sentences"},{"subj":"T74","pred":"source","obj":"LitCovid-sentences"},{"subj":"T75","pred":"source","obj":"LitCovid-sentences"},{"subj":"T76","pred":"source","obj":"LitCovid-sentences"},{"subj":"T77","pred":"source","obj":"LitCovid-sentences"},{"subj":"T78","pred":"source","obj":"LitCovid-sentences"},{"subj":"T79","pred":"source","obj":"LitCovid-sentences"},{"subj":"T80","pred":"source","obj":"LitCovid-sentences"},{"subj":"T81","pred":"source","obj":"LitCovid-sentences"},{"subj":"T82","pred":"source","obj":"LitCovid-sentences"},{"subj":"T83","pred":"source","obj":"LitCovid-sentences"},{"subj":"T84","pred":"source","obj":"LitCovid-sentences"},{"subj":"T85","pred":"source","obj":"LitCovid-sentences"},{"subj":"T86","pred":"source","obj":"LitCovid-sentences"},{"subj":"T87","pred":"source","obj":"LitCovid-sentences"},{"subj":"T88","pred":"source","obj":"LitCovid-sentences"},{"subj":"T89","pred":"source","obj":"LitCovid-sentences"}]},{"project":"LitCovid-PubTator","denotations":[{"id":"49","span":{"begin":587,"end":618},"obj":"Gene"},{"id":"50","span":{"begin":620,"end":625},"obj":"Gene"},{"id":"51","span":{"begin":13,"end":35},"obj":"Species"},{"id":"52","span":{"begin":37,"end":46},"obj":"Species"},{"id":"53","span":{"begin":74,"end":87},"obj":"Species"},{"id":"54","span":{"begin":151,"end":160},"obj":"Species"},{"id":"55","span":{"begin":206,"end":214},"obj":"Species"},{"id":"56","span":{"begin":251,"end":259},"obj":"Species"},{"id":"57","span":{"begin":282,"end":291},"obj":"Species"},{"id":"58","span":{"begin":439,"end":448},"obj":"Species"},{"id":"59","span":{"begin":486,"end":495},"obj":"Species"},{"id":"60","span":{"begin":500,"end":545},"obj":"Species"},{"id":"61","span":{"begin":547,"end":555},"obj":"Species"},{"id":"62","span":{"begin":666,"end":675},"obj":"Species"},{"id":"63","span":{"begin":711,"end":744},"obj":"Disease"},{"id":"72","span":{"begin":846,"end":854},"obj":"Species"},{"id":"73","span":{"begin":976,"end":981},"obj":"Species"},{"id":"74","span":{"begin":2267,"end":2276},"obj":"Species"},{"id":"75","span":{"begin":2408,"end":2417},"obj":"Species"},{"id":"76","span":{"begin":2600,"end":2609},"obj":"Species"},{"id":"77","span":{"begin":2852,"end":2861},"obj":"Species"},{"id":"78","span":{"begin":2993,"end":3002},"obj":"Species"},{"id":"79","span":{"begin":873,"end":894},"obj":"Disease"},{"id":"83","span":{"begin":5389,"end":5398},"obj":"Species"},{"id":"84","span":{"begin":5453,"end":5464},"obj":"Species"},{"id":"85","span":{"begin":5895,"end":5904},"obj":"Species"},{"id":"89","span":{"begin":6004,"end":6013},"obj":"Species"},{"id":"90","span":{"begin":6212,"end":6221},"obj":"Species"},{"id":"91","span":{"begin":6036,"end":6055},"obj":"Disease"},{"id":"96","span":{"begin":6311,"end":6320},"obj":"Species"},{"id":"97","span":{"begin":6388,"end":6396},"obj":"Chemical"},{"id":"98","span":{"begin":6398,"end":6406},"obj":"Chemical"},{"id":"99","span":{"begin":6418,"end":6426},"obj":"Chemical"}],"attributes":[{"id":"A49","pred":"tao:has_database_id","subj":"49","obj":"Gene:59272"},{"id":"A50","pred":"tao:has_database_id","subj":"50","obj":"Gene:59272"},{"id":"A51","pred":"tao:has_database_id","subj":"51","obj":"Tax:277944"},{"id":"A52","pred":"tao:has_database_id","subj":"52","obj":"Tax:277944"},{"id":"A53","pred":"tao:has_database_id","subj":"53","obj":"Tax:11118"},{"id":"A54","pred":"tao:has_database_id","subj":"54","obj":"Tax:277944"},{"id":"A55","pred":"tao:has_database_id","subj":"55","obj":"Tax:9606"},{"id":"A56","pred":"tao:has_database_id","subj":"56","obj":"Tax:9606"},{"id":"A57","pred":"tao:has_database_id","subj":"57","obj":"Tax:277944"},{"id":"A58","pred":"tao:has_database_id","subj":"58","obj":"Tax:277944"},{"id":"A59","pred":"tao:has_database_id","subj":"59","obj":"Tax:277944"},{"id":"A60","pred":"tao:has_database_id","subj":"60","obj":"Tax:694009"},{"id":"A61","pred":"tao:has_database_id","subj":"61","obj":"Tax:694009"},{"id":"A62","pred":"tao:has_database_id","subj":"62","obj":"Tax:277944"},{"id":"A63","pred":"tao:has_database_id","subj":"63","obj":"MESH:D012141"},{"id":"A72","pred":"tao:has_database_id","subj":"72","obj":"Tax:9606"},{"id":"A73","pred":"tao:has_database_id","subj":"73","obj":"Tax:9606"},{"id":"A74","pred":"tao:has_database_id","subj":"74","obj":"Tax:277944"},{"id":"A75","pred":"tao:has_database_id","subj":"75","obj":"Tax:277944"},{"id":"A76","pred":"tao:has_database_id","subj":"76","obj":"Tax:277944"},{"id":"A77","pred":"tao:has_database_id","subj":"77","obj":"Tax:277944"},{"id":"A78","pred":"tao:has_database_id","subj":"78","obj":"Tax:277944"},{"id":"A79","pred":"tao:has_database_id","subj":"79","obj":"MESH:D012141"},{"id":"A83","pred":"tao:has_database_id","subj":"83","obj":"Tax:277944"},{"id":"A84","pred":"tao:has_database_id","subj":"84","obj":"Tax:11118"},{"id":"A85","pred":"tao:has_database_id","subj":"85","obj":"Tax:277944"},{"id":"A89","pred":"tao:has_database_id","subj":"89","obj":"Tax:277944"},{"id":"A90","pred":"tao:has_database_id","subj":"90","obj":"Tax:277944"},{"id":"A91","pred":"tao:has_database_id","subj":"91","obj":"MESH:D012140"},{"id":"A96","pred":"tao:has_database_id","subj":"96","obj":"Tax:277944"},{"subj":"49","pred":"source","obj":"LitCovid-PubTator"},{"subj":"50","pred":"source","obj":"LitCovid-PubTator"},{"subj":"51","pred":"source","obj":"LitCovid-PubTator"},{"subj":"52","pred":"source","obj":"LitCovid-PubTator"},{"subj":"53","pred":"source","obj":"LitCovid-PubTator"},{"subj":"54","pred":"source","obj":"LitCovid-PubTator"},{"subj":"55","pred":"source","obj":"LitCovid-PubTator"},{"subj":"56","pred":"source","obj":"LitCovid-PubTator"},{"subj":"57","pred":"source","obj":"LitCovid-PubTator"},{"subj":"58","pred":"source","obj":"LitCovid-PubTator"},{"subj":"59","pred":"source","obj":"LitCovid-PubTator"},{"subj":"60","pred":"source","obj":"LitCovid-PubTator"},{"subj":"61","pred":"source","obj":"LitCovid-PubTator"},{"subj":"62","pred":"source","obj":"LitCovid-PubTator"},{"subj":"63","pred":"source","obj":"LitCovid-PubTator"},{"subj":"72","pred":"source","obj":"LitCovid-PubTator"},{"subj":"73","pred":"source","obj":"LitCovid-PubTator"},{"subj":"74","pred":"source","obj":"LitCovid-PubTator"},{"subj":"75","pred":"source","obj":"LitCovid-PubTator"},{"subj":"76","pred":"source","obj":"LitCovid-PubTator"},{"subj":"77","pred":"source","obj":"LitCovid-PubTator"},{"subj":"78","pred":"source","obj":"LitCovid-PubTator"},{"subj":"79","pred":"source","obj":"LitCovid-PubTator"},{"subj":"83","pred":"source","obj":"LitCovid-PubTator"},{"subj":"84","pred":"source","obj":"LitCovid-PubTator"},{"subj":"85","pred":"source","obj":"LitCovid-PubTator"},{"subj":"89","pred":"source","obj":"LitCovid-PubTator"},{"subj":"90","pred":"source","obj":"LitCovid-PubTator"},{"subj":"91","pred":"source","obj":"LitCovid-PubTator"},{"subj":"96","pred":"source","obj":"LitCovid-PubTator"},{"subj":"97","pred":"source","obj":"LitCovid-PubTator"},{"subj":"98","pred":"source","obj":"LitCovid-PubTator"},{"subj":"99","pred":"source","obj":"LitCovid-PubTator"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}]},{"project":"2_test","denotations":[{"id":"32079638-15034574-69772757","span":{"begin":147,"end":148},"obj":"15034574"},{"id":"32079638-16911043-69772758","span":{"begin":261,"end":262},"obj":"16911043"},{"id":"32079638-16282944-69772759","span":{"begin":264,"end":265},"obj":"16282944"},{"id":"32079638-15897467-69772760","span":{"begin":628,"end":629},"obj":"15897467"},{"id":"32079638-16007097-69772761","span":{"begin":631,"end":632},"obj":"16007097"},{"id":"32079638-1664049-69772762","span":{"begin":1304,"end":1305},"obj":"1664049"},{"id":"32079638-28968734-69772763","span":{"begin":2925,"end":2926},"obj":"28968734"},{"id":"32079638-21546353-69772764","span":{"begin":3095,"end":3096},"obj":"21546353"}],"attributes":[{"subj":"32079638-15034574-69772757","pred":"source","obj":"2_test"},{"subj":"32079638-16911043-69772758","pred":"source","obj":"2_test"},{"subj":"32079638-16282944-69772759","pred":"source","obj":"2_test"},{"subj":"32079638-15897467-69772760","pred":"source","obj":"2_test"},{"subj":"32079638-16007097-69772761","pred":"source","obj":"2_test"},{"subj":"32079638-1664049-69772762","pred":"source","obj":"2_test"},{"subj":"32079638-28968734-69772763","pred":"source","obj":"2_test"},{"subj":"32079638-21546353-69772764","pred":"source","obj":"2_test"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"LitCovid-PD-FMA-UBERON","color":"#93deec","default":true},{"id":"LitCovid-PD-UBERON","color":"#ece093"},{"id":"LitCovid-PD-MONDO","color":"#c593ec"},{"id":"LitCovid-PD-CLO","color":"#93ecab"},{"id":"LitCovid-PD-CHEBI","color":"#ec9394"},{"id":"LitCovid-PD-HP","color":"#93aeec"},{"id":"LitCovid-PD-GO-BP","color":"#c8ec93"},{"id":"LitCovid-sentences","color":"#ec93e2"},{"id":"LitCovid-PubTator","color":"#93ecdc"},{"id":"2_test","color":"#ecc293"}]}]}}