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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
2 0-19 Disease denotes Coronavirus disease MESH:D018352
3 21-29 Disease denotes COVID-19 MESH:C000657245
11 337-352 Species denotes new coronavirus Tax:2697049
12 484-490 Species denotes people Tax:9606
37 3307-3313 Species denotes people Tax:9606
13 112-137 Disease denotes going Coronavirus disease MESH:D018352
14 139-147 Disease denotes COVID-19 MESH:C000657245
15 675-683 Disease denotes COVID-19 MESH:C000657245
16 770-776 Disease denotes deaths MESH:D003643
17 824-829 Disease denotes death MESH:D003643
22 2054-2062 Species denotes patients Tax:9606
23 2254-2269 Species denotes new coronavirus Tax:2697049
24 1469-1476 Disease denotes illness MESH:D002908
25 2045-2053 Disease denotes infected MESH:D007239
30 2452-2463 Species denotes coronavirus Tax:11118
31 2594-2600 Species denotes people Tax:9606
32 2694-2700 Species denotes People Tax:9606
33 3140-3146 Species denotes people Tax:9606
38 3523-3528 Species denotes human Tax:9606
39 3532-3537 Species denotes human Tax:9606
42 4356-4367 Species denotes coronavirus Tax:11118
43 4861-4865 Species denotes Quan Tax:1172644
51 5673-5676 Gene denotes Ken Gene:5116
52 5300-5306 Species denotes people Tax:9606
53 5342-5353 Species denotes coronavirus Tax:11118
54 5571-5579 Species denotes patients Tax:9606
55 6080-6088 Species denotes Children Tax:9606
56 6157-6164 Disease denotes illness MESH:D002908
57 6195-6230 Disease denotes cardiovascular or pulmonary disease MESH:D002318
64 6900-6911 Species denotes coronavirus Tax:11118
65 6362-6370 Disease denotes COVID-19 MESH:C000657245
66 6394-6403 Disease denotes infection MESH:D007239
67 6502-6512 Disease denotes infections MESH:D007239
68 6626-6633 Disease denotes anxiety MESH:D001007
69 6638-6648 Disease denotes depression MESH:D000275

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T75 118-129 NCBITaxon:11118 denotes Coronavirus
T74 139-147 SP_7 denotes COVID-19
T73 341-352 NCBITaxon:11118 denotes coronavirus
T72 422-427 NCBITaxon:10239 denotes virus
T71 484-490 NCBITaxon:9606 denotes people
T70 675-683 SP_7 denotes COVID-19
T69 770-776 GO:0016265 denotes deaths
T68 824-829 GO:0016265 denotes death
T67 1094-1099 NCBITaxon:10239 denotes virus
T66 1491-1496 NCBITaxon:10239 denotes virus
T65 1723-1728 NCBITaxon:10239 denotes virus
T64 1900-1905 NCBITaxon:10239 denotes virus
T63 2085-2089 UBERON:0001456 denotes face
T62 2258-2269 NCBITaxon:11118 denotes coronavirus
T61 2393-2398 NCBITaxon:10239 denotes virus
T60 2452-2463 NCBITaxon:11118 denotes coronavirus
T59 2594-2600 NCBITaxon:9606 denotes people
T58 2619-2624 NCBITaxon:10239 denotes virus
T57 2694-2700 NCBITaxon:9606 denotes People
T56 2896-2901 NCBITaxon:10239 denotes virus
T55 3140-3146 NCBITaxon:9606 denotes people
T54 3169-3174 NCBITaxon:10239 denotes virus
T53 3307-3313 NCBITaxon:9606 denotes people
T52 3523-3528 SP_6;NCBITaxon:9606 denotes human
T51 3532-3537 SP_6;NCBITaxon:9606 denotes human
T50 3558-3563 NCBITaxon:10239 denotes virus
T49 4177-4190 UBERON:0002405 denotes immune system
T48 4356-4367 NCBITaxon:11118 denotes coronavirus
T47 4698-4701 UBERON:0000978 denotes leg
T46 4702-4708 UBERON:0002048 denotes lunges
T45 5300-5306 NCBITaxon:9606 denotes people
T44 5342-5353 NCBITaxon:11118 denotes coronavirus
T43 5549-5562 NCBITaxon:1 denotes individuals18
T42 6195-6209 UBERON:0004535 denotes cardiovascular
T41 6213-6222 UBERON:0002048 denotes pulmonary
T40 6362-6370 SP_7 denotes COVID-19
T39 6404-6411 GO:0065007 denotes control
T38 6900-6911 NCBITaxon:11118 denotes coronavirus
T3 21-29 SP_7 denotes COVID-19
T4 0-11 NCBITaxon:11118 denotes Coronavirus

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 2085-2089 Body_part denotes face http://purl.org/sig/ont/fma/fma24728
T2 4177-4190 Body_part denotes immune system http://purl.org/sig/ont/fma/fma9825
T3 4698-4701 Body_part denotes leg http://purl.org/sig/ont/fma/fma24979
T4 5225-5231 Body_part denotes mental http://purl.org/sig/ont/fma/fma264279

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 2085-2089 Body_part denotes face http://purl.obolibrary.org/obo/UBERON_0001456
T2 4177-4190 Body_part denotes immune system http://purl.obolibrary.org/obo/UBERON_0002405
T3 4698-4701 Body_part denotes leg http://purl.obolibrary.org/obo/UBERON_0000978

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 21-29 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T2 139-147 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T3 675-683 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T4 6213-6230 Disease denotes pulmonary disease http://purl.obolibrary.org/obo/MONDO_0005275
T5 6362-6370 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T6 6394-6403 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T7 6502-6512 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T8 6626-6648 Disease denotes anxiety and depression http://purl.obolibrary.org/obo/MONDO_0041086
T9 6626-6633 Disease denotes anxiety http://purl.obolibrary.org/obo/MONDO_0005618|http://purl.obolibrary.org/obo/MONDO_0011918
T11 6638-6648 Disease denotes depression http://purl.obolibrary.org/obo/MONDO_0002050

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 70-78 http://purl.obolibrary.org/obo/CLO_0001658 denotes activity
T2 167-170 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T3 300-312 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T4 365-366 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T5 422-427 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T6 428-431 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T7 444-445 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T8 516-519 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T9 565-566 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T10 779-780 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T11 1094-1099 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T12 1134-1137 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T13 1491-1496 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T14 1723-1728 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T15 1900-1905 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T16 2001-2002 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T17 2085-2089 http://purl.obolibrary.org/obo/UBERON_0001456 denotes face
T18 2393-2398 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T19 2481-2484 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T20 2568-2569 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T21 2619-2624 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T22 2721-2723 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T23 2896-2901 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T24 3002-3012 http://purl.obolibrary.org/obo/CLO_0001658 denotes activities
T25 3041-3049 http://purl.obolibrary.org/obo/CLO_0001658 denotes activity
T26 3106-3116 http://purl.obolibrary.org/obo/CLO_0001658 denotes activities
T27 3169-3174 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T28 3388-3396 http://purl.obolibrary.org/obo/CLO_0001658 denotes activity
T29 3437-3438 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T30 3523-3528 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T31 3532-3537 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T32 3558-3563 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T33 3593-3601 http://purl.obolibrary.org/obo/CLO_0001658 denotes activity
T34 3775-3785 http://purl.obolibrary.org/obo/CLO_0001658 denotes activities
T35 3836-3843 http://purl.obolibrary.org/obo/OBI_0000968 denotes devices
T36 3872-3880 http://purl.obolibrary.org/obo/CLO_0001658 denotes activity
T37 3940-3950 http://purl.obolibrary.org/obo/CLO_0001658 denotes activities
T38 4077-4078 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T39 4127-4135 http://purl.obolibrary.org/obo/CLO_0001658 denotes activity
T40 4177-4190 http://purl.obolibrary.org/obo/UBERON_0002405 denotes immune system
T41 4482-4492 http://purl.obolibrary.org/obo/CLO_0001658 denotes activities
T42 4543-4544 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T43 4698-4701 http://www.ebi.ac.uk/efo/EFO_0001411 denotes leg
T44 4702-4708 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lunges
T45 4762-4763 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T46 5046-5053 http://purl.obolibrary.org/obo/CLO_0009985 denotes focuses
T47 5093-5101 http://purl.obolibrary.org/obo/CLO_0001658 denotes activity
T48 5399-5407 http://purl.obolibrary.org/obo/CLO_0001658 denotes activity
T49 5492-5495 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T50 5691-5699 http://purl.obolibrary.org/obo/CLO_0001658 denotes activity
T51 5767-5770 http://purl.obolibrary.org/obo/PR_000001343 denotes aim
T52 5831-5839 http://purl.obolibrary.org/obo/CLO_0001658 denotes activity
T53 5894-5902 http://purl.obolibrary.org/obo/CLO_0001658 denotes activity
T54 5919-5921 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T55 5931-5932 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T56 5977-5987 http://purl.obolibrary.org/obo/CLO_0001658 denotes activities
T57 6047-6057 http://purl.obolibrary.org/obo/CLO_0001658 denotes activities
T58 6061-6062 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T59 6077-6079 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T60 6461-6462 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T61 6676-6677 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T62 6717-6718 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T63 6784-6792 http://purl.obolibrary.org/obo/CLO_0001658 denotes activity
T64 6821-6822 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T65 7169-7173 http://purl.obolibrary.org/obo/CLO_0008416 denotes Peer
T66 7169-7173 http://purl.obolibrary.org/obo/CLO_0050081 denotes Peer

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 3673-3682 http://purl.obolibrary.org/obo/GO_0007610 denotes behaviors
T2 6574-6583 http://purl.obolibrary.org/obo/GO_0007610 denotes behaviors

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T1 0-31 Sentence denotes Coronavirus disease (COVID-19):
T2 32-103 Sentence denotes The need to maintain regular physical activity while taking precautions
T3 105-261 Sentence denotes The on-going Coronavirus disease (COVID-19) outbreak in China has become the world's leading health headline and is causing major panic and public concerns.
T4 262-611 Sentence denotes On January 30, 2020, the World Health Organization (WHO) declared that the new coronavirus outbreak is a public health emergency of international concern.1 The virus has already had a direct impact on more than 10 million people in the city of Wuhan and has reached other parts of China as well, posing a health threat of unknown magnitude globally.
T5 612-778 Sentence denotes As of February 8, 2020, WHO reported 34,886 confirmed cases of COVID-19 globally, with 34,589 of them occurring in China (including 6101 severe cases and 723 deaths).
T6 779-1216 Sentence denotes A total of 288 other confirmed cases (with 1 death) have been reported in 24 countries, including Japan, Australia, Germany, and United States.2 However, these daily estimates are expected to rise even higher as reports from health authorities in China3 are gathered and near real-time updates of the Johns Hopkins virus dashboard are made.4 The outbreak has caused governments in various countries to take swift and protective measures.
T7 1217-1398 Sentence denotes In China, these included putting cities on lockdown,5 implementing travel warnings/bans and cancellations,6 extending national holidays, and closing schools and postponing classes.7
T8 1399-1566 Sentence denotes Currently, there is no vaccine for the prevention or treatment of the illness caused by the virus; its origins and the ultimate extent of this epidemic remain unknown.
T9 1567-2111 Sentence denotes There have been more than 50 research papers published within the last 20 days8 that have allowed for the rapid sharing of scientific information about the virus, but serious questions regarding the causes or mechanisms of transmission, incubation period, risk assessments, and options for effective treatment or intervention of the virus remain largely unanswered.9 There have been reports of significant shortages of medical staff, a lack of clinics that can handle and treat infected patients, and high demands for face masks for protection.
T10 2112-2431 Sentence denotes The Chinese central government is working with extraordinary diligence to mobilize resources, including building new hospitals and developing new coronavirus vaccine, as well as sending medical experts and clinicians to the city of Wuhan10 to help contain the highly transmittable virus outbreak from spreading further.
T11 2432-2625 Sentence denotes With the continuing coronavirus spur, the public has been advised by various health authorities to reduce traveling and stay at home as a basic means of limiting people's exposure to the virus.
T12 2626-2902 Sentence denotes Health authorities, including the National Health Commission of the People's Republic of China,11 WHO,12 and U.S Centers for Disease Control and Prevention,13 have issued safety recommendations for taking simple precautions to reduce exposure to and transmission of the virus.
T13 2903-3147 Sentence denotes Unfortunately, the mandated restrictions on travel and directives against participating in outdoor activities, including regular physical activity and exercise, will inevitably disrupt the routine daily activities of tens of millions of people.
T14 3148-3406 Sentence denotes While containing the virus as quickly as possible is the urgent public health priority, there have been few public health guidelines for the public as to what people can or should do in terms of maintaining their daily exercise or physical activity routines.
T15 3407-3602 Sentence denotes Arguably, staying home, while a safe measure, may have unintended negative consequences since such efforts to avoid human-to-human transmission of the virus may lead to reduced physical activity.
T16 3603-4238 Sentence denotes It is likely that prolonged home stay may lead to increased sedentary behaviors, such as spending excessive amounts of time sitting, reclining, or lying down for screening activities (playing games, watching television, using mobile devices); reducing regular physical activity (hence lower energy expenditure); or engaging in avoidance activities that, consequently, lead to an increased risk for and potential worsening of chronic health conditions.14 Therefore, there is a strong health rationale for continuing physical activity in the home to stay healthy and maintain immune system function in the current precarious environment.
T17 4239-4396 Sentence denotes Exercise at home using various safe, simple, and easily implementable exercises is well suited to avoid the airborne coronavirus and maintain fitness levels.
T18 4397-4566 Sentence denotes Such forms of exercise may include, but are not limited to, strengthening exercises, activities for balance and control, stretching exercises, or a combination of these.
T19 4567-4828 Sentence denotes Examples of home exercises include walking in the house and to the store as necessary, lifting and carrying groceries, alternating leg lunges, stair climbing, stand-to-sit and sit-to-stand using a chair and from the floor, chair squats, and sit-ups and pushups.
T20 4829-4999 Sentence denotes In addition, traditional Tai Ji Quan, Qigong exercises,15 and yoga16 should be considered since they require no equipment, little space, and can be practiced at any time.
T21 5000-5267 Sentence denotes The use of eHealth and exercise videos, which focuses on encouraging and delivering physical activity through the Internet, mobile technologies, and television17 are other viable avenues for maintaining physical function and mental health during this critical period.
T22 5268-5482 Sentence denotes Official measures that restrict people's movements in the presence of the coronavirus crisis do not necessarily mean that physical activity must be limited or that all forms of exercise must be eliminated entirely.
T23 5483-5754 Sentence denotes Exercise has been shown to have clear health benefits for healthy individuals18 and for patients with various diseases.19 In this respect, we strongly echo Dr. Steven Blair's quote from Dr. Ken Powell: “Some activity is better than none, and more is better than less” (p.
T24 5755-6311 Sentence denotes 525).20 The aim should be to undertake at least 30 min of moderate physical activity every day and/or at least 20 min of vigorous physical activity every other day.18 Ideally, a combination of both intensities of physical activities is preferable in addition to practicing strengthening-type activities on a regular basis.18 Children, the elderly, and those who have previously experienced symptoms of illness or are susceptible to chronic cardiovascular or pulmonary disease should seek advice from health care providers about when it is safe to exercise.
T25 6312-6447 Sentence denotes Given the concerns about the increasing spread of COVID-19, it is imperative that infection control and safety precautions be followed.
T26 6448-6535 Sentence denotes Home stay is a fundamental safety step that can limit infections from spreading widely.
T27 6536-6754 Sentence denotes But prolonged home stays can increase behaviors that lead to inactivity and contribute to anxiety and depression, which in turn can lead to a sedentary lifestyle known to result in a range of chronic health conditions.
T28 6755-6919 Sentence denotes Maintaining regular physical activity and routinely exercising in a safe home environment is an important strategy for healthy living during the coronavirus crisis.
T29 6921-6936 Sentence denotes Acknowledgments
T30 6937-7088 Sentence denotes The authors thank Keyi Yin, Wei Zhuang, Yiahua Zi, Yao Tong for their technical assistance in compiling and verifying the data provided in the article.
T31 7090-7109 Sentence denotes Competing interests
T32 7110-7168 Sentence denotes The authors declare that they have no competing interests.
T33 7169-7234 Sentence denotes Peer review under responsibility of Shanghai University of Sport.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 6626-6633 Phenotype denotes anxiety http://purl.obolibrary.org/obo/HP_0000739
T2 6638-6648 Phenotype denotes depression http://purl.obolibrary.org/obo/HP_0000716