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LitCovid-PubTator

{"project":"LitCovid-PubTator","denotations":[{"id":"131","span":{"begin":1816,"end":1823},"obj":"Species"},{"id":"132","span":{"begin":134,"end":143},"obj":"Disease"},{"id":"133","span":{"begin":910,"end":915},"obj":"Disease"},{"id":"134","span":{"begin":917,"end":922},"obj":"Disease"},{"id":"135","span":{"begin":926,"end":934},"obj":"Disease"},{"id":"136","span":{"begin":1111,"end":1119},"obj":"Disease"},{"id":"137","span":{"begin":1421,"end":1429},"obj":"Disease"},{"id":"140","span":{"begin":75,"end":84},"obj":"Disease"},{"id":"141","span":{"begin":86,"end":94},"obj":"Disease"},{"id":"143","span":{"begin":2083,"end":2107},"obj":"Disease"}],"attributes":[{"id":"A131","pred":"tao:has_database_id","subj":"131","obj":"Tax:9606"},{"id":"A132","pred":"tao:has_database_id","subj":"132","obj":"MESH:D007239"},{"id":"A133","pred":"tao:has_database_id","subj":"133","obj":"MESH:D005334"},{"id":"A134","pred":"tao:has_database_id","subj":"134","obj":"MESH:D003371"},{"id":"A135","pred":"tao:has_database_id","subj":"135","obj":"MESH:D004417"},{"id":"A136","pred":"tao:has_database_id","subj":"136","obj":"MESH:C000657245"},{"id":"A137","pred":"tao:has_database_id","subj":"137","obj":"MESH:C000657245"},{"id":"A140","pred":"tao:has_database_id","subj":"140","obj":"MESH:D007239"},{"id":"A141","pred":"tao:has_database_id","subj":"141","obj":"MESH:C000657245"},{"id":"A143","pred":"tao:has_database_id","subj":"143","obj":"MESH:C000657245"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"Table Definition of a contact and follow-up procedure by level of risk of infection, COVID-19, France, January 2020\nLevel of risk of infection Contact definition Follow-up procedure\nNegligible risk Person who had short (\u003c 15 min) contact with a confirmed case in public settings such as in public transportation, restaurants and shops; healthcare personnel who treated a confirmed case while wearing appropriate PPE without any breach identified. Neither identification nor information of contacts.\nLow risk Person who had a close (within 1 m) but short (\u003c 15 min) contact with a confirmed case, or a distant (\u003e 1 m) but prolonged contact in public settings, or any contact in private settings that does not match with the moderate/high risk of exposure criteria. Contacts are asked to measure their body temperature twice a day and check for clinical symptoms. In case of occurrence of symptoms like fever, cough or dyspnoea, contacts are asked to wear a surgical mask, isolate themselves and immediately contact the emergency hotline (SAMU-centre 15) indicating that they are contacts of a confirmed COVID-19 case.\nModerate/high risk Person who had prolonged (\u003e 15 min) direct face-to-face contact within 1 m with a confirmed case, shared the same hospital room, lived in the same household or shared any leisure or professional activity in close proximity with a confirmed case, or travelled together with a COVID-19 case in any kind of conveyance, without appropriate individual protection equipment. Healthcare personnel who treated a confirmed case without wearing appropriate PPE or with an identified breach. In addition to the above, contacts are asked to stay at home during a 14-day period after their last contact with the confirmed case while symptomatic and to avoid contacts with the other persons living in the same household (or at least wear a surgical mask). The follow-up consists of an active follow-up through daily calls from the regional follow-up team organised by the Regional Health Agency in collaboration with Santé publique France.\nCOVID-19: coronavirus disease 2019; PPE: personal protective equipment."}

LitCovid-PD-FMA-UBERON

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T5","span":{"begin":809,"end":813},"obj":"Body_part"},{"id":"T6","span":{"begin":1189,"end":1193},"obj":"Body_part"},{"id":"T7","span":{"begin":1197,"end":1201},"obj":"Body_part"}],"attributes":[{"id":"A5","pred":"fma_id","subj":"T5","obj":"http://purl.org/sig/ont/fma/fma256135"},{"id":"A6","pred":"fma_id","subj":"T6","obj":"http://purl.org/sig/ont/fma/fma24728"},{"id":"A7","pred":"fma_id","subj":"T7","obj":"http://purl.org/sig/ont/fma/fma24728"}],"text":"Table Definition of a contact and follow-up procedure by level of risk of infection, COVID-19, France, January 2020\nLevel of risk of infection Contact definition Follow-up procedure\nNegligible risk Person who had short (\u003c 15 min) contact with a confirmed case in public settings such as in public transportation, restaurants and shops; healthcare personnel who treated a confirmed case while wearing appropriate PPE without any breach identified. Neither identification nor information of contacts.\nLow risk Person who had a close (within 1 m) but short (\u003c 15 min) contact with a confirmed case, or a distant (\u003e 1 m) but prolonged contact in public settings, or any contact in private settings that does not match with the moderate/high risk of exposure criteria. Contacts are asked to measure their body temperature twice a day and check for clinical symptoms. In case of occurrence of symptoms like fever, cough or dyspnoea, contacts are asked to wear a surgical mask, isolate themselves and immediately contact the emergency hotline (SAMU-centre 15) indicating that they are contacts of a confirmed COVID-19 case.\nModerate/high risk Person who had prolonged (\u003e 15 min) direct face-to-face contact within 1 m with a confirmed case, shared the same hospital room, lived in the same household or shared any leisure or professional activity in close proximity with a confirmed case, or travelled together with a COVID-19 case in any kind of conveyance, without appropriate individual protection equipment. Healthcare personnel who treated a confirmed case without wearing appropriate PPE or with an identified breach. In addition to the above, contacts are asked to stay at home during a 14-day period after their last contact with the confirmed case while symptomatic and to avoid contacts with the other persons living in the same household (or at least wear a surgical mask). The follow-up consists of an active follow-up through daily calls from the regional follow-up team organised by the Regional Health Agency in collaboration with Santé publique France.\nCOVID-19: coronavirus disease 2019; PPE: personal protective equipment."}

LitCovid-PD-UBERON

{"project":"LitCovid-PD-UBERON","denotations":[{"id":"T6","span":{"begin":1189,"end":1193},"obj":"Body_part"},{"id":"T7","span":{"begin":1197,"end":1201},"obj":"Body_part"}],"attributes":[{"id":"A6","pred":"uberon_id","subj":"T6","obj":"http://purl.obolibrary.org/obo/UBERON_0001456"},{"id":"A7","pred":"uberon_id","subj":"T7","obj":"http://purl.obolibrary.org/obo/UBERON_0001456"}],"text":"Table Definition of a contact and follow-up procedure by level of risk of infection, COVID-19, France, January 2020\nLevel of risk of infection Contact definition Follow-up procedure\nNegligible risk Person who had short (\u003c 15 min) contact with a confirmed case in public settings such as in public transportation, restaurants and shops; healthcare personnel who treated a confirmed case while wearing appropriate PPE without any breach identified. Neither identification nor information of contacts.\nLow risk Person who had a close (within 1 m) but short (\u003c 15 min) contact with a confirmed case, or a distant (\u003e 1 m) but prolonged contact in public settings, or any contact in private settings that does not match with the moderate/high risk of exposure criteria. Contacts are asked to measure their body temperature twice a day and check for clinical symptoms. In case of occurrence of symptoms like fever, cough or dyspnoea, contacts are asked to wear a surgical mask, isolate themselves and immediately contact the emergency hotline (SAMU-centre 15) indicating that they are contacts of a confirmed COVID-19 case.\nModerate/high risk Person who had prolonged (\u003e 15 min) direct face-to-face contact within 1 m with a confirmed case, shared the same hospital room, lived in the same household or shared any leisure or professional activity in close proximity with a confirmed case, or travelled together with a COVID-19 case in any kind of conveyance, without appropriate individual protection equipment. Healthcare personnel who treated a confirmed case without wearing appropriate PPE or with an identified breach. In addition to the above, contacts are asked to stay at home during a 14-day period after their last contact with the confirmed case while symptomatic and to avoid contacts with the other persons living in the same household (or at least wear a surgical mask). The follow-up consists of an active follow-up through daily calls from the regional follow-up team organised by the Regional Health Agency in collaboration with Santé publique France.\nCOVID-19: coronavirus disease 2019; PPE: personal protective equipment."}

LitCovid-PD-MONDO

{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T48","span":{"begin":75,"end":84},"obj":"Disease"},{"id":"T49","span":{"begin":86,"end":94},"obj":"Disease"},{"id":"T50","span":{"begin":134,"end":143},"obj":"Disease"},{"id":"T51","span":{"begin":1111,"end":1119},"obj":"Disease"},{"id":"T52","span":{"begin":1421,"end":1429},"obj":"Disease"},{"id":"T53","span":{"begin":2073,"end":2081},"obj":"Disease"},{"id":"T54","span":{"begin":2083,"end":2107},"obj":"Disease"}],"attributes":[{"id":"A48","pred":"mondo_id","subj":"T48","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"},{"id":"A49","pred":"mondo_id","subj":"T49","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A50","pred":"mondo_id","subj":"T50","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"},{"id":"A51","pred":"mondo_id","subj":"T51","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A52","pred":"mondo_id","subj":"T52","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A53","pred":"mondo_id","subj":"T53","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A54","pred":"mondo_id","subj":"T54","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"}],"text":"Table Definition of a contact and follow-up procedure by level of risk of infection, COVID-19, France, January 2020\nLevel of risk of infection Contact definition Follow-up procedure\nNegligible risk Person who had short (\u003c 15 min) contact with a confirmed case in public settings such as in public transportation, restaurants and shops; healthcare personnel who treated a confirmed case while wearing appropriate PPE without any breach identified. Neither identification nor information of contacts.\nLow risk Person who had a close (within 1 m) but short (\u003c 15 min) contact with a confirmed case, or a distant (\u003e 1 m) but prolonged contact in public settings, or any contact in private settings that does not match with the moderate/high risk of exposure criteria. Contacts are asked to measure their body temperature twice a day and check for clinical symptoms. In case of occurrence of symptoms like fever, cough or dyspnoea, contacts are asked to wear a surgical mask, isolate themselves and immediately contact the emergency hotline (SAMU-centre 15) indicating that they are contacts of a confirmed COVID-19 case.\nModerate/high risk Person who had prolonged (\u003e 15 min) direct face-to-face contact within 1 m with a confirmed case, shared the same hospital room, lived in the same household or shared any leisure or professional activity in close proximity with a confirmed case, or travelled together with a COVID-19 case in any kind of conveyance, without appropriate individual protection equipment. Healthcare personnel who treated a confirmed case without wearing appropriate PPE or with an identified breach. In addition to the above, contacts are asked to stay at home during a 14-day period after their last contact with the confirmed case while symptomatic and to avoid contacts with the other persons living in the same household (or at least wear a surgical mask). The follow-up consists of an active follow-up through daily calls from the regional follow-up team organised by the Regional Health Agency in collaboration with Santé publique France.\nCOVID-19: coronavirus disease 2019; PPE: personal protective equipment."}

LitCovid-PD-CLO

LitCovid-PD-HP

{"project":"LitCovid-PD-HP","denotations":[{"id":"T7","span":{"begin":910,"end":915},"obj":"Phenotype"},{"id":"T8","span":{"begin":917,"end":922},"obj":"Phenotype"},{"id":"T9","span":{"begin":926,"end":934},"obj":"Phenotype"}],"attributes":[{"id":"A7","pred":"hp_id","subj":"T7","obj":"http://purl.obolibrary.org/obo/HP_0001945"},{"id":"A8","pred":"hp_id","subj":"T8","obj":"http://purl.obolibrary.org/obo/HP_0012735"},{"id":"A9","pred":"hp_id","subj":"T9","obj":"http://purl.obolibrary.org/obo/HP_0002094"}],"text":"Table Definition of a contact and follow-up procedure by level of risk of infection, COVID-19, France, January 2020\nLevel of risk of infection Contact definition Follow-up procedure\nNegligible risk Person who had short (\u003c 15 min) contact with a confirmed case in public settings such as in public transportation, restaurants and shops; healthcare personnel who treated a confirmed case while wearing appropriate PPE without any breach identified. Neither identification nor information of contacts.\nLow risk Person who had a close (within 1 m) but short (\u003c 15 min) contact with a confirmed case, or a distant (\u003e 1 m) but prolonged contact in public settings, or any contact in private settings that does not match with the moderate/high risk of exposure criteria. Contacts are asked to measure their body temperature twice a day and check for clinical symptoms. In case of occurrence of symptoms like fever, cough or dyspnoea, contacts are asked to wear a surgical mask, isolate themselves and immediately contact the emergency hotline (SAMU-centre 15) indicating that they are contacts of a confirmed COVID-19 case.\nModerate/high risk Person who had prolonged (\u003e 15 min) direct face-to-face contact within 1 m with a confirmed case, shared the same hospital room, lived in the same household or shared any leisure or professional activity in close proximity with a confirmed case, or travelled together with a COVID-19 case in any kind of conveyance, without appropriate individual protection equipment. Healthcare personnel who treated a confirmed case without wearing appropriate PPE or with an identified breach. In addition to the above, contacts are asked to stay at home during a 14-day period after their last contact with the confirmed case while symptomatic and to avoid contacts with the other persons living in the same household (or at least wear a surgical mask). The follow-up consists of an active follow-up through daily calls from the regional follow-up team organised by the Regional Health Agency in collaboration with Santé publique France.\nCOVID-19: coronavirus disease 2019; PPE: personal protective equipment."}

LitCovid-sentences

{"project":"LitCovid-sentences","denotations":[{"id":"T50","span":{"begin":0,"end":116},"obj":"Sentence"},{"id":"T51","span":{"begin":117,"end":186},"obj":"Sentence"},{"id":"T52","span":{"begin":187,"end":452},"obj":"Sentence"},{"id":"T53","span":{"begin":454,"end":505},"obj":"Sentence"},{"id":"T54","span":{"begin":506,"end":771},"obj":"Sentence"},{"id":"T55","span":{"begin":773,"end":870},"obj":"Sentence"},{"id":"T56","span":{"begin":871,"end":1125},"obj":"Sentence"},{"id":"T57","span":{"begin":1126,"end":1514},"obj":"Sentence"},{"id":"T58","span":{"begin":1515,"end":1626},"obj":"Sentence"},{"id":"T59","span":{"begin":1628,"end":1888},"obj":"Sentence"},{"id":"T60","span":{"begin":1889,"end":2072},"obj":"Sentence"},{"id":"T61","span":{"begin":2073,"end":2144},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Table Definition of a contact and follow-up procedure by level of risk of infection, COVID-19, France, January 2020\nLevel of risk of infection Contact definition Follow-up procedure\nNegligible risk Person who had short (\u003c 15 min) contact with a confirmed case in public settings such as in public transportation, restaurants and shops; healthcare personnel who treated a confirmed case while wearing appropriate PPE without any breach identified. Neither identification nor information of contacts.\nLow risk Person who had a close (within 1 m) but short (\u003c 15 min) contact with a confirmed case, or a distant (\u003e 1 m) but prolonged contact in public settings, or any contact in private settings that does not match with the moderate/high risk of exposure criteria. Contacts are asked to measure their body temperature twice a day and check for clinical symptoms. In case of occurrence of symptoms like fever, cough or dyspnoea, contacts are asked to wear a surgical mask, isolate themselves and immediately contact the emergency hotline (SAMU-centre 15) indicating that they are contacts of a confirmed COVID-19 case.\nModerate/high risk Person who had prolonged (\u003e 15 min) direct face-to-face contact within 1 m with a confirmed case, shared the same hospital room, lived in the same household or shared any leisure or professional activity in close proximity with a confirmed case, or travelled together with a COVID-19 case in any kind of conveyance, without appropriate individual protection equipment. Healthcare personnel who treated a confirmed case without wearing appropriate PPE or with an identified breach. In addition to the above, contacts are asked to stay at home during a 14-day period after their last contact with the confirmed case while symptomatic and to avoid contacts with the other persons living in the same household (or at least wear a surgical mask). The follow-up consists of an active follow-up through daily calls from the regional follow-up team organised by the Regional Health Agency in collaboration with Santé publique France.\nCOVID-19: coronavirus disease 2019; PPE: personal protective equipment."}