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PMC:7029452 / 6175-9858 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
107 43-50 Species denotes persons Tax:9606
108 66-72 Species denotes people Tax:9606
109 429-436 Species denotes persons Tax:9606
110 146-154 Disease denotes COVID-19 MESH:C000657245
111 333-353 Disease denotes SARS-CoV-2 infection MESH:C000657245
118 533-540 Species denotes persons Tax:9606
119 599-606 Species denotes persons Tax:9606
120 761-768 Species denotes persons Tax:9606
121 487-496 Disease denotes infection MESH:D007239
122 565-573 Disease denotes COVID-19 MESH:C000657245
123 829-838 Disease denotes infection MESH:D007239
131 2664-2671 Species denotes persons Tax:9606
132 982-991 Disease denotes infection MESH:D007239
133 1758-1763 Disease denotes fever MESH:D005334
134 1765-1770 Disease denotes cough MESH:D003371
135 1774-1782 Disease denotes dyspnoea MESH:D004417
136 1959-1967 Disease denotes COVID-19 MESH:C000657245
137 2269-2277 Disease denotes COVID-19 MESH:C000657245
140 923-932 Disease denotes infection MESH:D007239
141 934-942 Disease denotes COVID-19 MESH:C000657245
143 2931-2955 Disease denotes coronavirus disease 2019 MESH:C000657245
145 3177-3185 Species denotes Patients Tax:9606

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T5 1657-1661 Body_part denotes body http://purl.org/sig/ont/fma/fma256135
T6 2037-2041 Body_part denotes face http://purl.org/sig/ont/fma/fma24728
T7 2045-2049 Body_part denotes face http://purl.org/sig/ont/fma/fma24728

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T6 2037-2041 Body_part denotes face http://purl.obolibrary.org/obo/UBERON_0001456
T7 2045-2049 Body_part denotes face http://purl.obolibrary.org/obo/UBERON_0001456

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T41 146-154 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T42 333-341 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T43 333-337 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T44 344-353 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T45 487-496 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T46 565-573 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T47 829-838 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T48 923-932 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T49 934-942 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T50 982-991 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T51 1959-1967 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T52 2269-2277 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T53 2921-2929 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T54 2931-2955 Disease denotes coronavirus disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T45 114-115 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T46 305-306 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T47 386-392 http://purl.obolibrary.org/obo/CLO_0001658 denotes active
T48 544-545 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T49 610-611 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T50 678-679 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T51 869-870 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T52 1097-1098 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T53 1223-1224 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T54 1379-1380 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T55 1434-1435 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T56 1455-1456 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T57 1680-1681 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T58 1811-1812 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T59 1947-1948 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T60 2037-2041 http://purl.obolibrary.org/obo/UBERON_0001456 denotes face
T61 2045-2049 http://purl.obolibrary.org/obo/UBERON_0001456 denotes face
T62 2074-2075 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T63 2189-2197 http://purl.obolibrary.org/obo/CLO_0001658 denotes activity
T64 2222-2223 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T65 2267-2268 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T66 2396-2397 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T67 2544-2545 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T68 2719-2720 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T69 2766-2772 http://purl.obolibrary.org/obo/CLO_0001658 denotes active
T70 2836-2845 http://purl.obolibrary.org/obo/OBI_0000245 denotes organised
T71 3137-3143 http://purl.obolibrary.org/obo/CLO_0001658 denotes active
T72 3238-3239 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T3 32-34 Chemical denotes Co http://purl.obolibrary.org/obo/CHEBI_27638
T4 588-590 Chemical denotes Co http://purl.obolibrary.org/obo/CHEBI_27638

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T7 1758-1763 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T8 1765-1770 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T9 1774-1782 Phenotype denotes dyspnoea http://purl.obolibrary.org/obo/HP_0002094

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T42 0-31 Sentence denotes Contact and co-exposure tracing
T43 32-155 Sentence denotes Co-exposed persons are defined as people who shared the same risks of exposure as a possible or confirmed case of COVID-19.
T44 156-237 Sentence denotes Contact and co-exposure identification is done for all identified possible cases.
T45 238-312 Sentence denotes Contacts are traced from the date of onset of clinical symptoms in a case.
T46 313-462 Sentence denotes If the diagnosis of SARS-CoV-2 infection is confirmed in the index case, active surveillance of contacts/co-exposed persons is initiated immediately.
T47 463-587 Sentence denotes Three levels of risk of infection are defined for contacts/co-exposed persons of a possible/confirmed COVID-19 case (Table).
T48 588-708 Sentence denotes Co-exposed persons of a confirmed case are followed-up according to the same procedure as a moderate-/high-risk contact.
T49 709-847 Sentence denotes The follow-up procedure for the contacts/co-exposed persons differs according to the evaluation of the level of risk of infection (Table).
T50 848-964 Sentence denotes Table Definition of a contact and follow-up procedure by level of risk of infection, COVID-19, France, January 2020
T51 965-1034 Sentence denotes Level of risk of infection Contact definition Follow-up procedure
T52 1035-1300 Sentence denotes Negligible risk Person who had short (< 15 min) contact with a confirmed case in public settings such as in public transportation, restaurants and shops; healthcare personnel who treated a confirmed case while wearing appropriate PPE without any breach identified.
T53 1302-1353 Sentence denotes Neither identification nor information of contacts.
T54 1354-1619 Sentence denotes Low risk Person who had a close (within 1 m) but short (< 15 min) contact with a confirmed case, or a distant (> 1 m) but prolonged contact in public settings, or any contact in private settings that does not match with the moderate/high risk of exposure criteria.
T55 1621-1718 Sentence denotes Contacts are asked to measure their body temperature twice a day and check for clinical symptoms.
T56 1719-1973 Sentence denotes In case of occurrence of symptoms like fever, cough or dyspnoea, contacts are asked to wear a surgical mask, isolate themselves and immediately contact the emergency hotline (SAMU-centre 15) indicating that they are contacts of a confirmed COVID-19 case.
T57 1974-2362 Sentence denotes Moderate/high risk Person who had prolonged (> 15 min) direct face-to-face contact within 1 m with a confirmed case, shared the same hospital room, lived in the same household or shared any leisure or professional activity in close proximity with a confirmed case, or travelled together with a COVID-19 case in any kind of conveyance, without appropriate individual protection equipment.
T58 2363-2474 Sentence denotes Healthcare personnel who treated a confirmed case without wearing appropriate PPE or with an identified breach.
T59 2476-2736 Sentence denotes In addition to the above, contacts are asked to stay at home during a 14-day period after their last contact with the confirmed case while symptomatic and to avoid contacts with the other persons living in the same household (or at least wear a surgical mask).
T60 2737-2920 Sentence denotes The follow-up consists of an active follow-up through daily calls from the regional follow-up team organised by the Regional Health Agency in collaboration with Santé publique France.
T61 2921-2992 Sentence denotes COVID-19: coronavirus disease 2019; PPE: personal protective equipment.
T62 2993-3176 Sentence denotes During the initial implementation phase of the procedure, owing to the limited number of contacts involved, it was decided to also implement an active follow-up for low risk contacts.
T63 3177-3387 Sentence denotes Patients are interviewed by the clinicians, with the help of a translator if needed, who recover relevant information on their contacts since onset of clinical symptoms and the nature and intensity of exposure.
T64 3388-3565 Sentence denotes The involved regional health agencies work closely with the regional entities of Santé publique France (cellules régionales) in order to implement contact tracing and follow-up.
T65 3566-3683 Sentence denotes Santé publique France coordinates the surveillance at national level in liaison with the national Health Authorities.