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PMC:7029452 / 5203-6173 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
96 689-693 Gene denotes RdRp Gene:43740578
97 84-91 Species denotes patient Tax:9606
98 275-282 Species denotes patient Tax:9606
99 471-481 Species denotes SARS-CoV-2 Tax:2697049
100 118-139 Disease denotes respiratory infection MESH:D012141
101 297-316 Disease denotes respiratory illness MESH:D012140

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T4 694-698 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T37 118-139 Disease denotes respiratory infection http://purl.obolibrary.org/obo/MONDO_0024355
T38 130-139 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T39 471-479 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T40 471-475 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T33 44-45 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T34 82-83 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T35 97-98 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T36 181-182 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T37 273-274 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T38 348-349 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T39 389-390 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T40 407-408 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T41 439-440 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T42 460-461 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T43 552-559 http://purl.obolibrary.org/obo/UBERON_0000473 denotes Testing
T44 694-698 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T2 749-751 Chemical denotes IP http://purl.obolibrary.org/obo/CHEBI_74076

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T5 118-139 Phenotype denotes respiratory infection http://purl.obolibrary.org/obo/HP_0011947
T6 297-316 Phenotype denotes respiratory illness http://purl.obolibrary.org/obo/HP_0002086

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T36 0-15 Sentence denotes Case definition
T37 16-406 Sentence denotes From 17 to 29 January 2020, a possible case was defined either as a patient with a severe acute lower respiratory infection requiring admission to hospital and with a history of travel to or residence in Wuhan, China in the 14 days before symptom onset, or a patient with an acute respiratory illness whatever the severity and with a history of at-risk exposure, mainly to a confirmed case.
T38 407-551 Sentence denotes A confirmed case was defined as a possible case with a positive SARS-CoV-2 RT-PCR on respiratory samples, performed by an accredited laboratory.
T39 552-753 Sentence denotes Testing relied on the real-time RT-PCR procedure developed by the Charité [4] as well as on the use of real-time RT-PCR specific for the RdRp gene (four targets) designed at Institut Pasteur (RdRp-IP).
T40 754-827 Sentence denotes The case definition was first set up on 10 January and adapted over time.
T41 828-970 Sentence denotes The detailed case definition used for the cases presented here as well as the most up-to-date case definition are available in the Supplement.