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PMC:7029452 / 10276-14239 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
153 208-216 Disease denotes COVID-19 MESH:C000657245
162 1057-1061 Gene denotes RdRp Gene:43740578
163 248-255 Species denotes patient Tax:9606
164 400-405 Disease denotes fever MESH:D005334
165 407-416 Disease denotes headaches MESH:D006261
166 421-426 Disease denotes cough MESH:D003371
167 694-702 Disease denotes COVID-19 MESH:C000657245
168 837-857 Disease denotes SARS-CoV-2 infection MESH:C000657245
169 859-868 Disease denotes Infection MESH:D007239
171 1247-1255 Disease denotes COVID-19 MESH:C000657245
174 1312-1314 Gene denotes GP Gene:55819
175 1368-1387 Disease denotes infectious diseases MESH:D003141
178 1393-1400 Species denotes patient Tax:9606
179 1516-1523 Species denotes persons Tax:9606
194 2458-2462 Gene denotes RdRp Gene:43740578
195 2374-2387 Gene denotes Cases 2 and 3
196 2524-2528 Gene denotes RdRp Gene:43740578
197 2275-2285 Species denotes SARS-CoV-2 Tax:2697049
198 2479-2488 Species denotes 2019-nCov Tax:2697049
199 1807-1812 Disease denotes fever MESH:D005334
200 1822-1829 Disease denotes fatigue MESH:D005221
201 1831-1845 Disease denotes conjunctivitis MESH:D003231
202 1850-1855 Disease denotes cough MESH:D003371
203 1960-1965 Disease denotes fever MESH:D005334
204 1975-1982 Disease denotes fatigue MESH:D005221
205 1987-1992 Disease denotes cough MESH:D003371
206 2250-2258 Disease denotes COVID-19 MESH:C000657245
207 2260-2269 Disease denotes Infection MESH:D007239
211 2642-2649 Species denotes patient Tax:9606
212 2787-2793 Chemical denotes oxygen MESH:D010100
213 2830-2849 Disease denotes infectious diseases MESH:D003141
215 2972-2979 Species denotes persons Tax:9606
218 3203-3216 Gene denotes Cases 2 and 3
219 3196-3201 Disease denotes cough MESH:D003371
223 3701-3704 Gene denotes SpF Gene:23541
224 3327-3337 Species denotes SARS-CoV-2 Tax:2697049
225 3312-3321 Disease denotes infection MESH:D007239
227 3779-3812 Gene denotes Early Warning and Response System

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T8 451-455 Body_part denotes back http://purl.org/sig/ont/fma/fma25056
T9 978-982 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T10 1148-1152 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T11 2603-2607 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T12 2822-2826 Body_part denotes back http://purl.org/sig/ont/fma/fma25056

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T57 208-216 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T58 365-367 Disease denotes he http://purl.obolibrary.org/obo/MONDO_0017319
T59 674-676 Disease denotes he http://purl.obolibrary.org/obo/MONDO_0017319
T60 694-702 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T61 837-845 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T62 837-841 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T63 848-857 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T64 859-868 Disease denotes Infection http://purl.obolibrary.org/obo/MONDO_0005550
T65 1247-1255 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T66 1368-1378 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T67 1831-1845 Disease denotes conjunctivitis http://purl.obolibrary.org/obo/MONDO_0003799
T68 2250-2258 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T69 2260-2269 Disease denotes Infection http://purl.obolibrary.org/obo/MONDO_0005550
T70 2275-2283 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T71 2275-2279 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T72 2681-2683 Disease denotes he http://purl.obolibrary.org/obo/MONDO_0017319
T73 2830-2840 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T74 3312-3321 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T75 3327-3335 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T76 3327-3331 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T74 229-230 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T75 231-233 http://purl.obolibrary.org/obo/CLO_0001382 denotes 48
T76 243-247 http://purl.obolibrary.org/obo/UBERON_0003101 denotes male
T77 243-247 http://www.ebi.ac.uk/efo/EFO_0000970 denotes male
T78 479-481 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T79 570-571 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T80 630-631 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T81 947-953 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T82 978-982 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T83 1148-1152 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T84 1487-1494 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animals
T85 1626-1627 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T86 1690-1691 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T87 1712-1716 http://purl.obolibrary.org/obo/UBERON_0003101 denotes male
T88 1712-1716 http://www.ebi.ac.uk/efo/EFO_0000970 denotes male
T89 1747-1749 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T90 1882-1883 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T91 1904-1910 http://purl.obolibrary.org/obo/UBERON_0003100 denotes female
T92 2167-2168 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T93 2463-2466 http://purl.obolibrary.org/obo/NCBITaxon_9596 denotes Pan
T94 2497-2501 http://purl.obolibrary.org/obo/CLO_0037161 denotes E; N
T95 2603-2607 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T96 2637-2641 http://purl.obolibrary.org/obo/UBERON_0003101 denotes male
T97 2637-2641 http://www.ebi.ac.uk/efo/EFO_0000970 denotes male
T98 2943-2950 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animals
T99 3034-3035 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T100 3183-3184 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T101 3437-3438 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T5 243-247 Chemical denotes male http://purl.obolibrary.org/obo/CHEBI_30780
T6 1062-1064 Chemical denotes IP http://purl.obolibrary.org/obo/CHEBI_74076
T7 1286-1288 Chemical denotes ED http://purl.obolibrary.org/obo/CHEBI_73503
T8 1312-1314 Chemical denotes GP http://purl.obolibrary.org/obo/CHEBI_70744
T9 1364-1366 Chemical denotes ID http://purl.obolibrary.org/obo/CHEBI_141439
T10 1712-1716 Chemical denotes male http://purl.obolibrary.org/obo/CHEBI_30780
T11 2529-2531 Chemical denotes IP http://purl.obolibrary.org/obo/CHEBI_74076
T12 2637-2641 Chemical denotes male http://purl.obolibrary.org/obo/CHEBI_30780
T13 2787-2793 Chemical denotes oxygen http://purl.obolibrary.org/obo/CHEBI_25805

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T10 400-405 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T11 407-416 Phenotype denotes headaches http://purl.obolibrary.org/obo/HP_0002315
T12 421-426 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T13 1807-1812 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T14 1814-1820 Phenotype denotes chills http://purl.obolibrary.org/obo/HP_0025143
T15 1822-1829 Phenotype denotes fatigue http://purl.obolibrary.org/obo/HP_0012378
T16 1831-1845 Phenotype denotes conjunctivitis http://purl.obolibrary.org/obo/HP_0000509
T17 1850-1855 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T18 1960-1965 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T19 1967-1973 Phenotype denotes chills http://purl.obolibrary.org/obo/HP_0025143
T20 1975-1982 Phenotype denotes fatigue http://purl.obolibrary.org/obo/HP_0012378
T21 1987-1992 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T22 3196-3201 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T70 0-24 Sentence denotes Detected confirmed cases
T71 25-217 Sentence denotes Between 10 January and 24 January (period until confirmation of the first cases in France), nine possible cases were identified in France; among them, three cases were confirmed with COVID-19.
T72 218-273 Sentence denotes Case 1 was a 48-year-old male patient living in France.
T73 274-442 Sentence denotes He was travelling for professional reasons in China in various cities including Wuhan when he experienced his first symptoms (fever, headaches and cough) on 16 January.
T74 443-549 Sentence denotes He flew back to Bordeaux, France on 22 January via Shanghai, Qingdao and Paris Charles de Gaulle airports.
T75 550-596 Sentence denotes He reported wearing a mask during the flights.
T76 597-858 Sentence denotes He sought medical attention from a general practitioner on 23 January, where he was suspected of COVID-19, and was subsequently transferred to the regional referring hospital in Bordeaux, isolated and sampled for laboratory confirmation of SARS-CoV-2 infection.
T77 859-939 Sentence denotes Infection was confirmed on 24 January by the National Reference Centre (Figure).
T78 940-1160 Sentence denotes Case 1 tested positive only for the E gene target when using the Charité procedure [4] and was positive for all four RdRp-IP targets with threshold cycles (Ct) in good agreement with those obtained for the E gene target.
T79 1161-1285 Sentence denotes Figure Timeline of travel, onset of illness and close contacts of confirmed cases of COVID-19, France, January 2020 (n = 3)
T80 1286-1388 Sentence denotes ED: emergency department; GP: general practitioner; ICU: intensive care unit; ID: infectious diseases.
T81 1389-1540 Sentence denotes The patient arrived in Wuhan on 13 January, did not report any visit to markets, exposure to live animals or contact with sick persons during his stay.
T82 1541-1678 Sentence denotes No detailed information is available about the circumstances of exposure, apart from a visit to family members and friends on 15 January.
T83 1679-1793 Sentence denotes Case 2 was a 31-year-old Chinese male tourist who had left Wuhan on 18 January and arrived in Paris on 19 January.
T84 1794-1870 Sentence denotes He developed fever, chills, fatigue, conjunctivitis and cough on 19 January.
T85 1871-1945 Sentence denotes Case 3 was a 30-year-old Chinese female tourist who travelled with Case 2.
T86 1946-2007 Sentence denotes She developed fever, chills, fatigue and cough on 23 January.
T87 2008-2259 Sentence denotes On 24 January, they were advised by the Chinese embassy to seek medical attention at the national hotline (SAMU-centre 15) and were immediately transferred to a regional referring hospital, isolated and sampled for laboratory confirmation of COVID-19.
T88 2260-2373 Sentence denotes Infection with SARS-CoV-2 was confirmed on 24 January for both of them by the National Reference Centre (Figure).
T89 2374-2615 Sentence denotes Cases 2 and 3 were positive by RT-PCR for all targets of the Charité procedure [4] (RdRp Pan Sarbeco and 2019-nCov probes; E; N) as well for the four RdRp-IP targets with Ct values in good agreement with those obtained for the E gene target.
T90 2616-2743 Sentence denotes The condition of the male patient deteriorated on 29 January and he was admitted to the intensive care unit (ICU) the same day.
T91 2744-2869 Sentence denotes He stayed 72 h in the ICU for non-invasive oxygen therapy and was transferred back to infectious diseases ward on 31 January.
T92 2870-3020 Sentence denotes Neither of the two cases reported any visit to markets, exposure to live animals or contact with sick persons during the 14 days before symptom onset.
T93 3021-3122 Sentence denotes Both visited a hospital in Wuhan on 16 January for an unrelated medical condition in Case 3 (Figure).
T94 3123-3202 Sentence denotes As at 12 February, Case 1 was afebrile and symptomatic with a persistent cough.
T95 3203-3296 Sentence denotes Cases 2 and 3 were not symptomatic any more and were discharged from hospital on 12 February.
T96 3297-3524 Sentence denotes As soon as the infection with SARS-CoV-2 was confirmed for the three cases on 24 January, this information was immediately released through a press conference held by the French Minister of Health and the Chief Medical Officer.
T97 3525-3659 Sentence denotes Daily public communication on the state of the investigations around the cases was subsequently implemented by the Ministry of Health.
T98 3660-3713 Sentence denotes Daily updates were also published on the SpF website.
T99 3714-3963 Sentence denotes The three cases were notified to the European Commission via the Early Warning and Response System (EWRS) on 26 January, and to the European Center for Disease Prevention and Control (ECDC) via the European Surveillance System (TESSy) on 28 January.