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PMC:7029449 / 1250-5451 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
64 3467-3475 Species denotes SARS-CoV Tax:694009
30 38-47 Species denotes 2019-nCoV Tax:2697049
31 22-32 Disease denotes Infections MESH:D007239
32 735-743 Disease denotes infected MESH:D007239
33 792-801 Disease denotes infection MESH:D007239
35 1706-1715 Species denotes 2019-nCoV Tax:2697049
44 2468-2521 Species denotes severe acute respiratory syndrome-related coronavirus Tax:694009
45 2523-2531 Species denotes SARS-CoV Tax:694009
46 2968-2977 Species denotes 2019-nCoV Tax:2697049
47 3001-3010 Species denotes influenza Tax:11309
48 1790-1799 Disease denotes infection MESH:D007239
49 1940-1959 Disease denotes respiratory illness MESH:D012140
50 2361-2370 Disease denotes infection MESH:D007239
51 2772-2788 Disease denotes virus infections MESH:D001102
61 4142-4146 Gene denotes face Gene:2178
62 3321-3334 Species denotes Coronaviruses Tax:11118
63 3355-3360 Species denotes human Tax:9606
65 3792-3801 Species denotes 2019-nCoV Tax:2697049
66 3970-3979 Species denotes 2019-nCoV Tax:2697049
67 4051-4060 Species denotes 2019-nCoV Tax:2697049
68 3544-3552 Disease denotes infected MESH:D007239
69 3700-3708 Disease denotes flushing MESH:D005483

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T51 38-47 SP_7 denotes 2019-nCoV
T50 64-70 NCBITaxon:9606 denotes person
T49 74-80 NCBITaxon:9606 denotes person
T48 134-146 GO:0000003 denotes reproductive
T47 381-393 GO:0000003 denotes reproductive
T46 506-518 GO:0000003 denotes reproductive
T45 586-598 GO:0000003 denotes reproductive
T44 1576-1581 NCBITaxon:10239 denotes virus
T43 1706-1715 SP_7 denotes 2019-nCoV
T42 1914-1920 NCBITaxon:1 denotes person
T41 1940-1951 UBERON:0001004 denotes respiratory
T40 2010-2016 NCBITaxon:1 denotes person
T39 2061-2067 GO:0007613 denotes recall
T38 2388-2393 NCBITaxon:10239 denotes viral
T37 2481-2492 UBERON:0001004 denotes respiratory
T36 2510-2521 NCBITaxon:11118 denotes coronavirus
T35 2523-2531 SP_10 denotes SARS-CoV
T34 2624-2629 NCBITaxon:10239 denotes viral
T33 2673-2680 GO:0065007 denotes control
T32 2688-2692 SP_10 denotes SARS
T31 2762-2771 NCBITaxon:7719 denotes influenza
T30 2772-2777 NCBITaxon:10239 denotes virus
T29 2790-2795 NCBITaxon:10239 denotes virus
T28 2968-2977 SP_7 denotes 2019-nCoV
T27 3088-3092 SP_10 denotes SARS
T26 3110-3121 NCBITaxon:11886 denotes respiratory
T25 3122-3129 NCBITaxon:10239 denotes viruses
T24 3162-3173 UBERON:0001004 denotes respiratory
T23 3193-3204 NCBITaxon:11886;UBERON:0001004 denotes respiratory
T22 3205-3212 NCBITaxon:10239 denotes viruses
T21 3321-3334 NCBITaxon:11118 denotes Coronaviruses
T20 3355-3360 SP_6;NCBITaxon:9606 denotes human
T19 3361-3383 UBERON:0001555 denotes gastrointestinal tract
T18 3404-3408 UBERON:0000165 denotes oral
T17 3467-3475 SP_10 denotes SARS-CoV
T16 3578-3582 UBERON:0000165 denotes oral
T15 3792-3801 SP_7 denotes 2019-nCoV
T14 3970-3979 SP_7 denotes 2019-nCoV
T12 4142-4146 UBERON:0001456 denotes face
T13 4051-4060 SP_7 denotes 2019-nCoV

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 3361-3383 Body_part denotes gastrointestinal tract http://purl.org/sig/ont/fma/fma71132
T2 4142-4146 Body_part denotes face http://purl.org/sig/ont/fma/fma24728
T3 4188-4192 Body_part denotes hand http://purl.org/sig/ont/fma/fma9712

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 4142-4146 Body_part denotes face http://purl.obolibrary.org/obo/UBERON_0001456
T2 4188-4192 Body_part denotes hand http://purl.obolibrary.org/obo/UBERON_0002398

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T8 792-801 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T9 1790-1799 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T10 2352-2370 Disease denotes hospital infection http://purl.obolibrary.org/obo/MONDO_0043544
T11 2361-2370 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T12 2448-2462 Disease denotes infectiousness http://purl.obolibrary.org/obo/MONDO_0005550
T13 2468-2501 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T14 2523-2531 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T15 2688-2692 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T16 2762-2771 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T17 2772-2788 Disease denotes virus infections http://purl.obolibrary.org/obo/MONDO_0005108
T18 3001-3010 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T19 3088-3092 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T20 3467-3475 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T7 195-196 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T8 288-289 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T9 358-359 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T10 606-609 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T11 890-892 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T12 971-972 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T13 1054-1055 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T14 1193-1196 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T15 1576-1581 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T16 1848-1850 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T17 1890-1891 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T18 1938-1939 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T19 2306-2309 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T20 2772-2777 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T21 2790-2795 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T22 2906-2907 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T23 3122-3129 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T24 3205-3212 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T25 3313-3314 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T26 3355-3360 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T27 3361-3383 http://purl.obolibrary.org/obo/UBERON_0005409 denotes gastrointestinal tract
T28 3438-3439 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T29 3811-3814 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T30 3950-3956 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T31 4142-4146 http://purl.obolibrary.org/obo/UBERON_0001456 denotes face

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T2 1940-1959 Phenotype denotes respiratory illness http://purl.obolibrary.org/obo/HP_0002086
T3 3700-3708 Phenotype denotes flushing http://purl.obolibrary.org/obo/HP_0031284

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T2 445-454 http://purl.obolibrary.org/obo/GO_0007610 denotes behaviour
T3 1471-1484 http://purl.obolibrary.org/obo/GO_0007610 denotes behaviours or
T4 2388-2402 http://purl.obolibrary.org/obo/GO_0019076 denotes viral shedding

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T7 0-21 Sentence denotes Transmission dynamics
T8 22-234 Sentence denotes Infections with 2019-nCoV can spread from person to person, and in the earliest phase of the outbreak the basic reproductive number was estimated to be around 2.2, assuming a mean serial interval of 7.5 days [2].
T9 235-401 Sentence denotes The serial interval was not precisely estimated, and a potentially shorter mean serial interval would have corresponded to a slightly lower basic reproductive number.
T10 402-526 Sentence denotes Control measures and changes in population behaviour later in January should have reduced the effective reproductive number.
T11 527-768 Sentence denotes However, it is too early to estimate whether the effective reproductive number has been reduced to below the critical threshold of 1 because cases currently being detected and reported would have mostly been infected in mid- to late-January.
T12 769-1004 Sentence denotes Average delays between infection and illness onset have been estimated at around 5–6 days, with an upper limit of around 11-14 days [2,5], and delays from illness onset to laboratory confirmation added a further 10 days on average [2].
T13 1005-1102 Sentence denotes Chains of transmission have now been reported in a number of locations outside of mainland China.
T14 1103-1286 Sentence denotes Within the coming days or weeks it will become clear whether sustained local transmission has been occurring in other cities outside of Hubei province in China, or in other countries.
T15 1287-1552 Sentence denotes If sustained transmission does occur in other locations, it would be valuable to determine whether there is variation in transmissibility by location, for example because of different behaviours or control measures, or because of different environmental conditions.
T16 1553-1738 Sentence denotes To address the latter, virus survival studies can be done in the laboratory to confirm whether there are preferred ranges of temperature or humidity for 2019-nCoV transmission to occur.
T17 1739-1964 Sentence denotes In an analysis of the first 425 confirmed cases of infection, 73% of cases with illness onset between 12 and 22 January reported no exposure to either a wet market or another person with symptoms of a respiratory illness [2].
T18 1965-2175 Sentence denotes The lack of reported exposure to another ill person could be attributed to lack of awareness or recall bias, but China’s health minister publicly warned that pre-symptomatic transmission could be occurring [6].
T19 2176-2379 Sentence denotes Determining the extent to which asymptomatic or pre-symptomatic transmission might be occurring is an urgent priority, because it has direct implications for public health and hospital infection control.
T20 2380-2463 Sentence denotes Data on viral shedding dynamics could help in assessing duration of infectiousness.
T21 2464-2659 Sentence denotes For severe acute respiratory syndrome-related coronavirus (SARS-CoV), infectivity peaked at around 10 days after illness onset [7], consistent with the peak in viral load at around that time [8].
T22 2660-2757 Sentence denotes This allowed control of the SARS epidemic through prompt detection of cases and strict isolation.
T23 2758-2933 Sentence denotes For influenza virus infections, virus shedding is highest on the day of illness onset and relatively higher from shortly before symptom onset until a few days after onset [9].
T24 2934-3093 Sentence denotes To date, transmission patterns of 2019-nCoV appear more similar to influenza, with contagiousness occurring around the time of symptom onset, rather than SARS.
T25 3094-3320 Sentence denotes Transmission of respiratory viruses generally happens through large respiratory droplets, but some respiratory viruses can spread through fine particle aerosols [10], and indirect transmission via fomites can also play a role.
T26 3321-3462 Sentence denotes Coronaviruses can also infect the human gastrointestinal tract [11,12], and faecal-oral transmission might also play a role in this instance.
T27 3463-3722 Sentence denotes The SARS-CoV superspreading event at Amoy Gardens where more than 300 cases were infected was attributed to faecal-oral, then airborne, spread through pressure differentials between contaminated effluent pipes, bathroom floor drains and flushing toilets [13].
T28 3723-4008 Sentence denotes The first large identifiable superspreading event during the present 2019-nCoV outbreak has apparently taken place on the Diamond Princess cruise liner quarantined off the coast of Yokohama, Japan, with at least 130 passengers tested positive for 2019-nCoV as at 10 February 2020 [14].
T29 4009-4201 Sentence denotes Identifying which modes are important for 2019-nCoV transmission would inform the importance of personal protective measures such as face masks (and specifically which types) and hand hygiene.