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PMC:7029449 / 11379-14081 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
171 873-881 Species denotes children Tax:9606
172 1877-1885 Species denotes children Tax:9606
173 482-491 Disease denotes infection MESH:D007239
174 493-501 Disease denotes zoonotic MESH:D015047
175 1543-1548 Disease denotes death MESH:D003643
176 1800-1809 Disease denotes infection MESH:D007239
177 1890-1898 Disease denotes infected MESH:D007239
178 2034-2044 Disease denotes infections MESH:D007239
179 2331-2341 Disease denotes infections MESH:D007239

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T45 482-491 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T46 1800-1809 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T47 1923-1933 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T48 2034-2044 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T49 2331-2341 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T53 1257-1262 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T54 1290-1295 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes Virus

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T4 2407-2421 Chemical denotes pharmaceutical http://purl.obolibrary.org/obo/CHEBI_52217

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T7 1793-1809 Phenotype denotes severe infection http://purl.obolibrary.org/obo/HP_0032169

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T6 723-737 http://purl.obolibrary.org/obo/GO_0019076 denotes viral shedding

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T64 0-57 Sentence denotes Domain Priorities Study designs / data sources required
T65 58-282 Sentence denotes Transmission dynamics Provide robust estimates of the serial interval and generation time Detailed exposure and illness onset information from unselected case clusters in line lists, preferably from more than one epicentre
T66 283-565 Sentence denotes Estimate effective reproductive number (Rt) in other cities (i.e. ex-Wuhan) in China and elsewhere Epidemic curves for each city by dates of illness onset, preferably stratified by likely source of infection (zoonotic, environmental point source, local case vs imported index case)
T67 566-799 Sentence denotes Clarify the relative importance of pre-symptomatic / asymptomatic transmission Detailed reports of transmission events and symptomatic status of infectors; viral shedding data; special studies in households and other closed settings
T68 800-964 Sentence denotes Determine the role of different age groups in transmission, particularly children Transmission studies in households and other closed settings; serological studies
T69 965-1221 Sentence denotes Determine the relative importance of possible modes of transmission Outbreak investigations, in particular for superspreading events; environmental sampling, air sampling and exhaled breath sampling; special studies in households and other closed settings
T70 1222-1370 Sentence denotes Determine environmental effects on virus survival and transmission Virus survival studies in situ vivo and in vitro; environmental sampling studies
T71 1371-1581 Sentence denotes Severity Provide robust estimates of the risk of fatality of hospitalised cases, by age or other important groupings Reports from unselected clinical cohorts of times to death or recovery among resolved cases
T72 1582-1760 Sentence denotes Provide robust estimates of the risk of fatality of symptomatic cases, by age or other important groupings Estimates of incidence from population-wide surveillance of mild cases
T73 1761-1847 Sentence denotes Identify groups at high risk of severe infection Case–control studies; cohort studies
T74 1848-2016 Sentence denotes Susceptibility Determine if children are infected, and if so, if they are infectious Transmission studies in households and other closed settings; serological studies
T75 2017-2152 Sentence denotes Determine if all infections result in neutralising immunity Convalescent serology from mild as well as severe cases, in all age groups
T76 2153-2341 Sentence denotes Control measures Provide impact estimates of travel restrictions, border screening and quarantine policies on non-local spread Modelling analyses of local and global spread of infections
T77 2342-2520 Sentence denotes Estimate the effects of social distancing measures and other non-pharmaceutical interventions on transmissibility Comparative analyses of transmissibility in different locations