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PMC:7029448 / 6335-7415 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
119 79-96 Species denotes human coronavirus Tax:694448
120 310-319 Species denotes HCoV-HKU1 Tax:290028
121 321-330 Species denotes HCoV-OC43 Tax:31631
122 332-341 Species denotes HCoV-NL63 Tax:277944
123 343-352 Species denotes HCoV-229E Tax:11137
124 354-390 Species denotes Middle East respiratory syndrome CoV Tax:1335626
125 395-432 Species denotes severe acute respiratory syndrome CoV Tax:694009
126 1060-1069 Species denotes 2019-nCoV Tax:2697049
127 98-102 Species denotes HCoV Tax:694448

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T8 829-835 Body_part denotes sputum http://purl.org/sig/ont/fma/fma312401
T9 1026-1039 Body_part denotes blood, plasma http://purl.org/sig/ont/fma/fma62970
T10 1041-1046 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 829-835 Body_part denotes sputum http://purl.obolibrary.org/obo/UBERON_0007311
T2 1026-1039 Body_part denotes blood, plasma http://purl.obolibrary.org/obo/UBERON_0001969
T3 1026-1031 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T4 1041-1046 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T13 395-428 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T48 79-84 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T49 502-509 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T50 650-651 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T51 761-763 http://purl.obolibrary.org/obo/CLO_0001313 denotes 36
T52 790-792 http://purl.obolibrary.org/obo/CLO_0001302 denotes 34
T53 824-826 http://purl.obolibrary.org/obo/CLO_0001302 denotes 34
T54 841-843 http://purl.obolibrary.org/obo/CLO_0001302 denotes 34
T55 918-919 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T56 1020-1031 http://purl.obolibrary.org/obo/UBERON_0000178 denotes whole blood
T57 1020-1031 http://www.ebi.ac.uk/efo/EFO_0000296 denotes whole blood
T58 1033-1039 http://purl.obolibrary.org/obo/UBERON_0001969 denotes plasma

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T50 0-116 Sentence denotes Forty-five laboratories in 28 countries indicated having previous expertise in human coronavirus (HCoV) diagnostics.
T51 117-185 Sentence denotes For two countries the two responding laboratories had no experience.
T52 186-438 Sentence denotes Twenty-five laboratories in 19 countries indicated having experience in molecular diagnostics for all six additional HCoVs (HCoV-HKU1, HCoV-OC43, HCoV-NL63, HCoV-229E, Middle East respiratory syndrome CoV and severe acute respiratory syndrome CoV) [6].
T53 439-579 Sentence denotes Forty-four laboratories in 29 countries performed differential testing for other common respiratory pathogens of viral and bacterial origin.
T54 580-904 Sentence denotes Overall, the 47 survey respondents indicated their ability to process a wide range of respiratory sample types, including nasopharyngeal swabs (n = 38), bronchoalveolar lavage (n = 36), oropharyngeal swab (n = 34), nasopharyngeal aspirate (n = 34), sputum (n = 34), (endo) tracheal aspirate (n = 32) and nasal wash (n = 29).
T55 905-1080 Sentence denotes In addition, a number of respondents indicated that their laboratories could process biopsy materials (n = 28) and whole blood, plasma, serum (n = 28) for 2019-nCoV detection.