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LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T220 122-133 NCBITaxon:11118 denotes coronavirus
T219 135-144 SP_7 denotes 2019-nCoV
T218 277-288 NCBITaxon:11118 denotes coronavirus
T217 403-414 NCBITaxon:11118 denotes coronavirus
T216 428-435 NCBITaxon:species denotes species
T215 454-460 NCBITaxon:9606 denotes humans
T214 660-671 NCBITaxon:11118 denotes coronavirus
T213 696-700 CHEBI:33290;CHEBI:33290 denotes food
T212 906-911 NCBITaxon:10239 denotes virus
T211 935-940 NCBITaxon:10239 denotes virus
T210 971-974 SP_2 denotes bat
T209 975-981 NCBITaxon:11118 denotes corona
T208 982-989 NCBITaxon:10239 denotes viruses
T207 991-1004 NCBITaxon:11118 denotes Coronaviruses
T206 1006-1009 NCBITaxon:11118 denotes CoV
T205 1031-1046 SO:0000984 denotes single-stranded
T204 1051-1058 NCBITaxon:10239 denotes viruses
T203 1083-1088 NCBITaxon:10239 denotes viral
T202 1093-1099 SO:0001026 denotes genome
T201 1203-1208 SP_6;NCBITaxon:9606 denotes human
T200 1248-1254 NCBITaxon:33208 denotes animal
T199 1334-1343 SP_7 denotes 2019-nCoV
T198 1393-1405 SP_10 denotes severe acute
T197 1406-1417 SP_10;UBERON:0001004 denotes respiratory
T196 1418-1438 SP_10 denotes syndrome coronavirus
T195 1440-1448 SP_10 denotes SARS-CoV
T194 1455-1466 NCBITaxon:11118 denotes coronavirus
T193 1497-1501 SP_10 denotes SARS
T192 1553-1556 SP_2 denotes bat
T191 1557-1570 NCBITaxon:11118 denotes coronaviruses
T190 1578-1582 SP_2 denotes Bats
T189 1633-1641 SP_10 denotes SARS-CoV
T188 1652-1665 NCBITaxon:11118 denotes coronaviruses
T187 1684-1691 NCBITaxon:species denotes species
T186 1701-1712 SP_9 denotes Middle East
T185 1713-1724 SP_9;UBERON:0001004 denotes respiratory
T184 1725-1745 SP_9 denotes syndrome coronavirus
T183 1747-1755 SP_9 denotes MERS-CoV
T182 1813-1817 SP_9 denotes MERS
T181 1904-1909 SP_6;NCBITaxon:9606 denotes human
T180 1929-1940 NCBITaxon:11118 denotes coronavirus
T179 1963-1968 SP_6;NCBITaxon:9606 denotes human
T178 2008-2013 SP_6;NCBITaxon:9606;PG_10 denotes human
T177 2014-2045 PG_10;PR:000003622 denotes angiotensin-converting enzyme 2
T176 2047-2051 G_3;PG_10;PR:000003622 denotes ACE2
T175 2076-2084 SP_10 denotes SARS-CoV
T174 2128-2132 SP_10 denotes SARS
T173 2134-2138 SP_9 denotes MERS
T172 2149-2160 NCBITaxon:11118 denotes coronavirus
T171 2263-2269 NCBITaxon:11118 denotes corona
T170 2270-2275 NCBITaxon:10239 denotes virus
T169 2562-2568 UBERON:0007023 denotes adults
T168 2717-2726 SP_7 denotes 2019-nCoV
T167 2767-2775 SP_10 denotes SARS-CoV
T166 2806-2814 SP_9 denotes MERS-CoV
T165 2884-2893 SP_7 denotes 2019-nCoV
T164 2962-2970 SP_9 denotes MERS-CoV
T163 2975-2983 SP_10 denotes SARS-CoV
T162 3027-3036 SP_7 denotes 2019-nCoV
T161 3318-3323 SP_6;NCBITaxon:9606 denotes human
T160 3327-3332 SP_6;NCBITaxon:9606 denotes human
T159 3489-3512 UBERON:0001558 denotes lower respiratory tract
T158 3556-3570 UBERON:0001179 denotes intrapulmonary
T157 3571-3581 UBERON:0000483;CL:0000066 denotes epithelial
T156 3582-3587 CL:0000066 denotes cells
T155 3639-3647 SP_10 denotes SARS-CoV
T154 3652-3660 SP_9 denotes MERS-CoV
T153 4126-4138 UBERON:0001852 denotes endotracheal
T152 4195-4204 SP_7 denotes 2019-nCoV
T151 4275-4286 UBERON:0001004 denotes respiratory
T150 4386-4395 SP_7 denotes 2019-nCoV
T149 4522-4531 SP_7 denotes 2019-nCoV
T148 4553-4564 UBERON:0001004 denotes respiratory
T147 4720-4725 NCBITaxon:10239 denotes virus
T146 4844-4853 SP_7 denotes 2019-nCoV
T145 4900-4905 NCBITaxon:10239 denotes viral
T144 5003-5014 UBERON:0001004 denotes respiratory
T143 5024-5030 NCBITaxon:11118 denotes corona
T142 5031-5036 NCBITaxon:10239 denotes virus
T141 5038-5046 SP_9 denotes MERS-CoV
T140 5056-5068 SP_10 denotes severe acute
T139 5069-5080 SP_10;UBERON:0001004 denotes respiratory
T138 5081-5101 SP_10 denotes syndrome coronavirus
T137 5103-5111 SP_10 denotes SARS-CoV
T136 5199-5206 UBERON:0009912 denotes lobular
T135 5281-5286 UBERON:0001443 denotes chest
T134 5331-5340 SP_7 denotes 2019-nCoV
T133 5355-5366 UBERON:0001004 denotes respiratory
T132 5418-5425 UBERON:0000948 denotes cardiac
T131 5512-5521 UBERON:0007221 denotes care unit
T130 5580-5589 SP_7 denotes 2019-nCoV
T129 5770-5781 UBERON:0001004 denotes respiratory
T128 5847-5856 SP_7 denotes 2019-nCoV
T127 5865-5870 NCBITaxon:10239 denotes viral
T126 6000-6010 CHEBI:33282;CHEBI:33282 denotes antibiotic
T125 6083-6098 CHEBI:50858;CHEBI:50858 denotes corticosteroids
T124 6103-6108 NCBITaxon:10239 denotes viral
T123 6174-6183 SP_7 denotes 2019-nCoV
T122 6344-6353 SP_7 denotes 2019-nCoV
T121 6380-6393 NCBITaxon:11118 denotes coronaviruses
T120 6441-6446 NCBITaxon:10239 denotes viral
T119 6548-6557 SP_7 denotes 2019-nCoV
T118 6634-6645 NCBITaxon:11118 denotes coronavirus
T117 6792-6796 SP_10 denotes SARS
T116 6798-6802 SP_9 denotes MERS
T115 6998-7011 NCBITaxon:11118 denotes coronaviruses
T114 7217-7230 NCBITaxon:11118 denotes coronaviruses
T2 15-26 NCBITaxon:11118 denotes Coronavirus

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 1047-1050 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T2 1089-1092 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T3 1093-1099 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T4 1969-1974 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T5 3489-3512 Body_part denotes lower respiratory tract http://purl.org/sig/ont/fma/fma45662
T6 3571-3587 Body_part denotes epithelial cells http://purl.org/sig/ont/fma/fma66768
T7 3582-3587 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T8 5281-5286 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 3489-3512 Body_part denotes lower respiratory tract http://purl.obolibrary.org/obo/UBERON_0001558
T2 3495-3512 Body_part denotes respiratory tract http://purl.obolibrary.org/obo/UBERON_0000065
T3 5281-5286 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 1393-1426 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T2 1440-1448 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T3 1497-1501 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T4 1633-1641 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T5 2076-2084 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T6 2128-2132 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T7 2341-2350 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T8 2767-2775 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T9 2975-2983 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T10 3495-3523 Disease denotes respiratory tract infections http://purl.obolibrary.org/obo/MONDO_0024355
T11 3639-3647 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T12 3936-3945 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T13 4900-4915 Disease denotes viral pneumonia http://purl.obolibrary.org/obo/MONDO_0006012
T14 4906-4915 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T15 5056-5089 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T16 5103-5111 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T17 5349-5384 Disease denotes acute respiratory distress syndrome http://purl.obolibrary.org/obo/MONDO_0006502
T18 5355-5384 Disease denotes respiratory distress syndrome http://purl.obolibrary.org/obo/MONDO_0009971
T19 5386-5390 Disease denotes ARDS http://purl.obolibrary.org/obo/MONDO_0006502
T20 5426-5432 Disease denotes injury http://purl.obolibrary.org/obo/MONDO_0021178
T21 5454-5464 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T22 5770-5792 Disease denotes respiratory infections http://purl.obolibrary.org/obo/MONDO_0024355
T23 5794-5803 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T24 5805-5809 Disease denotes ARDS http://purl.obolibrary.org/obo/MONDO_0006502
T25 5865-5880 Disease denotes viral infection http://purl.obolibrary.org/obo/MONDO_0005108
T26 5871-5880 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T27 6054-6064 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T28 6103-6118 Disease denotes viral pneumonia http://purl.obolibrary.org/obo/MONDO_0006012
T29 6109-6118 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T30 6122-6126 Disease denotes ARDS http://purl.obolibrary.org/obo/MONDO_0006502
T31 6441-6456 Disease denotes viral pneumonia http://purl.obolibrary.org/obo/MONDO_0006012
T32 6447-6456 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T33 6696-6714 Disease denotes infectious disease http://purl.obolibrary.org/obo/MONDO_0005550
T34 6792-6796 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T35 6804-6809 Disease denotes Ebola http://purl.obolibrary.org/obo/MONDO_0005737
T36 6815-6819 Disease denotes Zika http://purl.obolibrary.org/obo/MONDO_0018661
T37 7466-7475 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 28-29 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T2 178-181 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T3 298-299 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T4 392-393 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T5 454-460 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T6 520-521 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T7 690-691 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T8 729-732 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T9 753-754 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T10 906-911 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T11 935-940 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T12 971-974 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T13 982-989 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T14 1051-1058 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T15 1203-1208 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T16 1248-1254 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animal
T17 1323-1327 http://purl.obolibrary.org/obo/CLO_0001302 denotes 3, 4
T18 1347-1348 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T19 1553-1556 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T20 1578-1582 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes Bats
T21 1828-1831 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T22 1870-1876 http://purl.obolibrary.org/obo/NCBITaxon_9837 denotes camels
T23 1892-1893 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T24 1904-1909 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T25 1963-1974 http://purl.obolibrary.org/obo/CLO_0053065 denotes human cells
T26 2008-2013 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T27 2270-2275 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T28 2903-2907 http://purl.obolibrary.org/obo/CLO_0001302 denotes 3, 4
T29 3318-3326 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human to
T30 3327-3332 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T31 3489-3512 http://purl.obolibrary.org/obo/UBERON_0001558 denotes lower respiratory tract
T32 3571-3581 http://purl.obolibrary.org/obo/CL_0000066 denotes epithelial
T33 3582-3587 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T34 3589-3590 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T35 3771-3772 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T36 3811-3812 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T37 4215-4216 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T38 4720-4725 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T39 5031-5036 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T40 5281-5286 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T41 5605-5606 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T42 5863-5864 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T43 6686-6687 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T44 7023-7024 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 975-981 Chemical denotes corona http://purl.obolibrary.org/obo/CHEBI_37409
T2 1349-1353 Chemical denotes beta http://purl.obolibrary.org/obo/CHEBI_10545
T3 2014-2025 Chemical denotes angiotensin http://purl.obolibrary.org/obo/CHEBI_48433
T4 2190-2194 Chemical denotes beta http://purl.obolibrary.org/obo/CHEBI_10545
T5 2263-2269 Chemical denotes corona http://purl.obolibrary.org/obo/CHEBI_37409
T6 5024-5030 Chemical denotes corona http://purl.obolibrary.org/obo/CHEBI_37409
T7 6000-6010 Chemical denotes antibiotic http://purl.obolibrary.org/obo/CHEBI_33281
T8 6083-6098 Chemical denotes corticosteroids http://purl.obolibrary.org/obo/CHEBI_50858
T9 6650-6655 Chemical denotes crown http://purl.obolibrary.org/obo/CHEBI_37409

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 1910-1917 http://purl.obolibrary.org/obo/GO_0009606 denotes tropism
T2 3544-3551 http://purl.obolibrary.org/obo/GO_0009606 denotes tropism
T3 5865-5880 http://purl.obolibrary.org/obo/GO_0016032 denotes viral infection

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T1 0-27 Sentence denotes The 2019 Novel Coronavirus:
T2 28-55 Sentence denotes A Crown Jewel of Pandemics?
T3 57-209 Sentence denotes Starting from the December 2019 identification of the 2019 novel coronavirus (2019-nCoV), an overwhelming sense of panic has enveloped public discourse.
T4 210-349 Sentence denotes This is likely to be amplified by WHO recently declaring the novel coronavirus outbreak a public health emergency of international concern.
T5 350-497 Sentence denotes It is the third significant occurrence of a zoonotic coronavirus crossing the species barrier to infect humans, and it likely will not be the last.
T6 498-655 Sentence denotes Hope is not lost; and a measured approach, one that is cognizant of the seriousness of this public health crisis without giving into hysteria, is imperative.
T7 656-856 Sentence denotes The coronavirus was identified in a wet food market in Wuhan, China, and has been the subject of a robust public health response by both Chinese authorities and the international community ever since.
T8 857-990 Sentence denotes While debates about the primary reservoir of the virus are still ongoing, the virus is closely related to several bat corona-viruses.
T9 991-1118 Sentence denotes Coronaviruses (CoV) are positive-sense, single-stranded RNA viruses, possessing the largest viral RNA genome known to-date [1].
T10 1119-1329 Sentence denotes They are known for their rapid spread, unpredictable emergence, and their threat to human health, magnified by the wide range of animal reservoirs and the lack of preventive or curative treatments [1, 2, 3, 4].
T11 1330-1577 Sentence denotes The 2019-nCoV is a beta-CoV similar in sequence (80%) with the severe acute respiratory syndrome coronavirus (SARS-CoV), the coronavirus strain implicated in the 2002 SARS outbreak, but even more closely related to several bat coronaviruses [1,4].
T12 1578-1696 Sentence denotes Bats were also identified as the primary reservoir for SARS-CoV, although coronaviruses are found in many species [1].
T13 1697-1918 Sentence denotes The Middle East respiratory syndrome coronavirus (MERS-CoV), another highly pathogenic CoV responsible for the 2012 MERS outbreak, has been transmitted through contact with camels, although with a different human tropism.
T14 1919-2091 Sentence denotes The novel coronavirus is believed to infect human cells through its interaction with the human angiotensin-converting enzyme 2 (ACE2) receptor, similarly to SARS-CoV [1,4].
T15 2092-2336 Sentence denotes Despite the differences between the SARS, MERS and novel coronavirus, the similarities within the beta-CoV genus allow us to extrapolate from our previous experience with corona-virus outbreaks and increase our understanding of the current one.
T16 2337-2512 Sentence denotes The infection affects patients with and without underlying diseases, although the majority of the fatalities are older patients or patients with significant comorbidities [2].
T17 2513-2660 Sentence denotes The vast majority of reported cases have been in adults, decreasing our ability to draw inferences and make recommendations for pediatric patients.
T18 2661-2909 Sentence denotes Despite its apparent increased infectivity (R0=2.2) the 2019-nCoV strain appears to be less virulent than SARS-CoV (case-fatality rate=9.5%) and MERS-CoV (case-fatality rate=34.4%); currently reported case-fatality rate of 2019-nCoV is 2.2% [3, 4].
T19 2910-3056 Sentence denotes Superspreaders (R0>10) have been identified in both MERS-CoV and SARS-CoV outbreaks and there are similar reports of 2019-nCoV superspreaders [4].
T20 3057-3294 Sentence denotes One should be mindful of the possibility of systematic underreporting in our current dataset, but the numbers represent our best estimates as of January 31, 2020, 02:30 GMT. (For updated information see: https://tinyurl.com/Hopkin-sCSSE)
T21 3295-3431 Sentence denotes Recent case reports of human to human transmission, including in patients who have not visited Wuhan, are concerning but not surprising.
T22 3432-3588 Sentence denotes Transmission is believed to occur only after symptoms of lower respiratory tract infections present, due to its tropism for intrapulmonary epithelial cells.
T23 3589-3746 Sentence denotes A crucial lesson learned from our experience with SARS-CoV and MERS-CoV is that community transmission occurs primarily through large droplets, not aerosols.
T24 3747-3927 Sentence denotes Transmission is also to a large degree nosocomial, which is why a measured approach, one that prevents overutilization of medical resources and panic in the general population [4].
T25 3928-4209 Sentence denotes From an infection-control perspective, medical professionals should exercise droplet and contact precautions, as well as airborne precautions when performing procedures that generate aerosols (i.e. endotracheal suctioning, intubation) in patients suspected of having 2019-nCoV [5].
T26 4210-4343 Sentence denotes From a public-health perspective, patients presenting with acute respiratory illness require screening according to the WHO criteria.
T27 4344-4450 Sentence denotes Patients suspected of being infected with 2019-nCoV should be managed according to governmental protocols.
T28 4451-4532 Sentence denotes Patients who do not meet the criteria are unlikely to be infected with 2019-nCoV.
T29 4533-4682 Sentence denotes Patients with acute respiratory illness, without positive WHO criteria, should not have their management changed solely based on unspecific symptoms.
T30 4683-4820 Sentence denotes For patients without exposure to the virus, the immediate health risk is low; this should be communicated to both providers and patients.
T31 4821-4967 Sentence denotes Patients infected with 2019-nCoV typically present with symptoms indicative of viral pneumonia such as fever, cough, fatigue, and dyspnea [2,5,6].
T32 4968-5127 Sentence denotes This is similar to the Middle East respiratory syndrome corona-virus (MERS-CoV) and the severe acute respiratory syndrome coronavirus (SARS-CoV) outbreaks [6].
T33 5128-5303 Sentence denotes Patients typically exhibit radiographic findings of bilateral multiple lobular and subsegmental consolidations, progressing to ground-glass opacities on chest CT images [2,6].
T34 5304-5526 Sentence denotes Secondary complications of 2019-nCoV include acute respiratory distress syndrome (ARDS), RNAemia (viremia), acute cardiac injury as well as secondary infections, with 23% requiring admission to the intensive care unit [2].
T35 5527-5590 Sentence denotes The competent critical care provider should not fear 2019-nCoV.
T36 5591-5701 Sentence denotes While this is a new, incompletely understood strain, its management remains similar to previous CoV outbreaks.
T37 5702-5838 Sentence denotes Patients may present with clinical pictures including uncomplicated respiratory infections, pneumonia, ARDS, sepsis or septic shock [5].
T38 5839-6069 Sentence denotes Despite 2019-nCoV being a viral infection, patients meeting sepsis criteria should receive the customary treatment, including early initiation of broad-spectrum antibiotic therapy, due to the potential of secondary infections [5].
T39 6070-6215 Sentence denotes The usage of corticosteroids for viral pneumonia or ARDS is discouraged in patients suspected of having 2019-nCoV unless otherwise indicated [5].
T40 6216-6354 Sentence denotes With that being said, our current guidance is interim and good clinical judgment is still necessary when managing patients with 2019-nCoV.
T41 6355-6469 Sentence denotes While 2019-nCV is novel, coronaviruses are not and the general principles of managing viral pneumonia still apply.
T42 6470-6620 Sentence denotes Both local reporting guidelines, as well as WHO guidance on the management of 2019-nCoV, will continue to evolve as we better understand the outbreak.
T43 6621-6675 Sentence denotes Is the novel coronavirus the crown-jewel of pandemics?
T44 6676-6679 Sentence denotes No.
T45 6680-6755 Sentence denotes It is a serious infectious disease, but not one that is incredibly unusual.
T46 6756-6820 Sentence denotes In the recent past, we have managed SARS, MERS, Ebola, and Zika.
T47 6821-6947 Sentence denotes Our scientific community is prepared and vigilant, which is evidenced in the incredibly fast response to the current outbreak.
T48 6948-7012 Sentence denotes This is also not the last time we will hear about coronaviruses.
T49 7013-7171 Sentence denotes They have a significant infectivity potential, and more scientific resources should be devoted to understanding and reducing the severity of future outbreaks.
T50 7172-7301 Sentence denotes However, due to our experience with managing coronaviruses outbreaks in the past, we are well prepared to tackle the current one.
T51 7302-7476 Sentence denotes Despite the high infectivity, the case-fatality rate remains low; state governments and the WHO are implementing the necessary measures to reduce the spread of the infection.
T52 7478-7498 Sentence denotes Conflict of interest
T53 7499-7515 Sentence denotes None to declare.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 3489-3523 Phenotype denotes lower respiratory tract infections http://purl.obolibrary.org/obo/HP_0002783
T2 4275-4294 Phenotype denotes respiratory illness http://purl.obolibrary.org/obo/HP_0002086
T3 4553-4572 Phenotype denotes respiratory illness http://purl.obolibrary.org/obo/HP_0002086
T4 4906-4915 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T5 4924-4929 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T6 4931-4936 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T7 4938-4945 Phenotype denotes fatigue http://purl.obolibrary.org/obo/HP_0012378
T8 4951-4958 Phenotype denotes dyspnea http://purl.obolibrary.org/obo/HP_0002094
T9 5355-5375 Phenotype denotes respiratory distress http://purl.obolibrary.org/obo/HP_0002098
T10 5402-5409 Phenotype denotes viremia http://purl.obolibrary.org/obo/HP_0020071
T11 5770-5792 Phenotype denotes respiratory infections http://purl.obolibrary.org/obo/HP_0011947
T12 5794-5803 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T13 5811-5817 Phenotype denotes sepsis http://purl.obolibrary.org/obo/HP_0100806
T14 5828-5833 Phenotype denotes shock http://purl.obolibrary.org/obo/HP_0031273
T15 5899-5905 Phenotype denotes sepsis http://purl.obolibrary.org/obo/HP_0100806
T16 6109-6118 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T17 6447-6456 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
1 4-26 Species denotes 2019 Novel Coronavirus Tax:2697049
7 111-133 Species denotes 2019 novel coronavirus Tax:2697049
8 135-144 Species denotes 2019-nCoV Tax:2697049
9 271-288 Species denotes novel coronavirus Tax:2697049
10 454-460 Species denotes humans Tax:9606
11 394-423 Disease denotes zoonotic coronavirus crossing MESH:D015047
16 660-671 Species denotes coronavirus Tax:11118
17 991-1004 Species denotes Coronaviruses Tax:11118
18 1006-1009 Species denotes CoV Tax:11118
19 1203-1208 Species denotes human Tax:9606
41 2014-2045 Gene denotes angiotensin-converting enzyme 2 Gene:59272
42 2047-2051 Gene denotes ACE2 Gene:59272
43 1334-1343 Species denotes 2019-nCoV Tax:2697049
44 1349-1357 Species denotes beta-CoV Tax:694002
45 1393-1438 Species denotes severe acute respiratory syndrome coronavirus Tax:694009
46 1440-1448 Species denotes SARS-CoV Tax:694009
47 1455-1466 Species denotes coronavirus Tax:11118
48 1557-1570 Species denotes coronaviruses Tax:11118
49 1633-1641 Species denotes SARS-CoV Tax:694009
50 1652-1665 Species denotes coronaviruses Tax:11118
51 1701-1756 Species denotes Middle East respiratory syndrome coronavirus (MERS-CoV) Tax:1335626
52 1784-1787 Species denotes CoV Tax:11118
53 1870-1876 Species denotes camels Tax:9837
54 1904-1909 Species denotes human Tax:9606
55 1923-1940 Species denotes novel coronavirus Tax:2697049
56 1963-1968 Species denotes human Tax:9606
57 2008-2013 Species denotes human Tax:9606
58 2076-2084 Species denotes SARS-CoV Tax:694009
59 2143-2160 Species denotes novel coronavirus Tax:2697049
60 2190-2198 Species denotes beta-CoV Tax:694002
61 2263-2275 Species denotes corona-virus Tax:11118
74 2359-2367 Species denotes patients Tax:9606
75 2456-2464 Species denotes patients Tax:9606
76 2468-2476 Species denotes patients Tax:9606
77 2651-2659 Species denotes patients Tax:9606
78 2717-2726 Species denotes 2019-nCoV Tax:2697049
79 2767-2775 Species denotes SARS-CoV Tax:694009
80 2806-2814 Species denotes MERS-CoV Tax:1335626
81 2884-2893 Species denotes 2019-nCoV Tax:2697049
82 2962-2970 Species denotes MERS-CoV Tax:1335626
83 2975-2983 Species denotes SARS-CoV Tax:694009
84 3027-3036 Species denotes 2019-nCoV Tax:2697049
85 2341-2350 Disease denotes infection MESH:D007239
92 3318-3323 Species denotes human Tax:9606
93 3327-3332 Species denotes human Tax:9606
94 3360-3368 Species denotes patients Tax:9606
95 3639-3647 Species denotes SARS-CoV Tax:694009
96 3652-3660 Species denotes MERS-CoV Tax:1335626
97 3495-3523 Disease denotes respiratory tract infections MESH:D012141
113 4166-4174 Species denotes patients Tax:9606
114 4195-4204 Species denotes 2019-nCoV Tax:2697049
115 4244-4252 Species denotes patients Tax:9606
116 4344-4352 Species denotes Patients Tax:9606
117 4386-4395 Species denotes 2019-nCoV Tax:2697049
118 4451-4459 Species denotes Patients Tax:9606
119 4522-4531 Species denotes 2019-nCoV Tax:2697049
120 4533-4541 Species denotes Patients Tax:9606
121 4687-4695 Species denotes patients Tax:9606
122 4811-4819 Species denotes patients Tax:9606
123 3936-3945 Disease denotes infection MESH:D007239
124 4275-4294 Disease denotes respiratory illness MESH:D012140
125 4372-4380 Disease denotes infected MESH:D007239
126 4508-4516 Disease denotes infected MESH:D007239
127 4553-4572 Disease denotes respiratory illness MESH:D012140
148 4821-4829 Species denotes Patients Tax:9606
149 4844-4853 Species denotes 2019-nCoV Tax:2697049
150 4991-5036 Species denotes Middle East respiratory syndrome corona-virus Tax:1335626
151 5038-5046 Species denotes MERS-CoV Tax:1335626
152 5056-5101 Species denotes severe acute respiratory syndrome coronavirus Tax:694009
153 5103-5111 Species denotes SARS-CoV Tax:694009
154 5128-5136 Species denotes Patients Tax:9606
155 5331-5340 Species denotes 2019-nCoV Tax:2697049
156 4830-4838 Disease denotes infected MESH:D007239
157 4900-4915 Disease denotes viral pneumonia
158 4924-4929 Disease denotes fever MESH:D005334
159 4931-4936 Disease denotes cough MESH:D003371
160 4938-4945 Disease denotes fatigue MESH:D005221
161 4951-4958 Disease denotes dyspnea MESH:D004417
162 5349-5384 Disease denotes acute respiratory distress syndrome MESH:D012128
163 5386-5390 Disease denotes ARDS MESH:D012128
164 5393-5400 Disease denotes RNAemia
165 5402-5409 Disease denotes viremia MESH:D014766
166 5418-5432 Disease denotes cardiac injury MESH:D006331
167 5444-5464 Disease denotes secondary infections MESH:D060085
190 5580-5589 Species denotes 2019-nCoV Tax:2697049
191 5687-5690 Species denotes CoV Tax:11118
192 5702-5710 Species denotes Patients Tax:9606
193 5847-5856 Species denotes 2019-nCoV Tax:2697049
194 5882-5890 Species denotes patients Tax:9606
195 6145-6153 Species denotes patients Tax:9606
196 6174-6183 Species denotes 2019-nCoV Tax:2697049
197 6330-6338 Species denotes patients Tax:9606
198 6344-6353 Species denotes 2019-nCoV Tax:2697049
199 6373-6393 Species denotes novel, coronaviruses Tax:2697049
200 6548-6557 Species denotes 2019-nCoV Tax:2697049
201 5770-5792 Disease denotes respiratory infections MESH:D012141
202 5794-5803 Disease denotes pneumonia MESH:D011014
203 5805-5809 Disease denotes ARDS MESH:D012128
204 5811-5817 Disease denotes sepsis MESH:D018805
205 5821-5833 Disease denotes septic shock MESH:D012772
206 5865-5880 Disease denotes viral infection MESH:D001102
207 5899-5905 Disease denotes sepsis MESH:D018805
208 6044-6064 Disease denotes secondary infections MESH:D060085
209 6103-6118 Disease denotes viral pneumonia
210 6122-6126 Disease denotes ARDS MESH:D012128
211 6441-6456 Disease denotes viral pneumonia
218 6628-6645 Species denotes novel coronavirus Tax:2697049
219 6804-6809 Species denotes Ebola Tax:1570291
220 6998-7011 Species denotes coronaviruses Tax:11118
221 7217-7230 Species denotes coronaviruses Tax:11118
222 6696-6714 Disease denotes infectious disease MESH:D003141
223 7466-7475 Disease denotes infection MESH:D007239