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PMC:7029158 / 18597-23031 JSONTXT

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LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T25 638-652 Disease denotes infectiousness http://purl.obolibrary.org/obo/MONDO_0005550
T26 798-802 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T27 1262-1272 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T28 2144-2154 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T29 2805-2815 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T97 297-298 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T98 743-748 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T99 803-808 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T100 1138-1139 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T101 1165-1168 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T102 1178-1179 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T103 1217-1220 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T104 1241-1242 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T105 1421-1422 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T106 1489-1492 http://purl.obolibrary.org/obo/CLO_0001602 denotes a 6
T107 1489-1492 http://purl.obolibrary.org/obo/CLO_0001603 denotes a 6
T108 1489-1492 http://purl.obolibrary.org/obo/CLO_0050248 denotes a 6
T109 1489-1492 http://purl.obolibrary.org/obo/CLO_0052463 denotes a 6
T110 1546-1547 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T111 1871-1872 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T112 2041-2042 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T113 2080-2081 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T114 2433-2434 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T115 2855-2856 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T116 2920-2921 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T117 3673-3674 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T118 3736-3737 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T119 4090-4091 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T120 4282-4291 http://purl.obolibrary.org/obo/UBERON_0001353 denotes posterior

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T27 299-311 http://purl.obolibrary.org/obo/GO_0000003 denotes reproduction
T28 430-442 http://purl.obolibrary.org/obo/GO_0000003 denotes reproduction
T29 557-569 http://purl.obolibrary.org/obo/GO_0000003 denotes reproduction
T30 658-670 http://purl.obolibrary.org/obo/GO_0000003 denotes reproduction
T31 814-826 http://purl.obolibrary.org/obo/GO_0000003 denotes reproduction
T32 1186-1198 http://purl.obolibrary.org/obo/GO_0000003 denotes reproduction
T33 1588-1600 http://purl.obolibrary.org/obo/GO_0000003 denotes reproduction
T34 2195-2207 http://purl.obolibrary.org/obo/GO_0000003 denotes reproduction
T35 2928-2940 http://purl.obolibrary.org/obo/GO_0000003 denotes reproduction
T36 3572-3584 http://purl.obolibrary.org/obo/GO_0000003 denotes reproduction
T37 3738-3750 http://purl.obolibrary.org/obo/GO_0000003 denotes reproduction
T38 3851-3857 http://purl.obolibrary.org/obo/GO_0040007 denotes growth
T39 3958-3970 http://purl.obolibrary.org/obo/GO_0000003 denotes reproduction
T40 4383-4395 http://purl.obolibrary.org/obo/GO_0000003 denotes reproduction

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T116 0-232 Sentence denotes There are three further models incorporating data from international travels: the models of Imai and coauthors (Imai et al., 2020), of Kucharski et al. (Kucharski et al., 2020) and of Wu and collaborators (Wu, Leung, & Leung, 2020).
T117 233-345 Sentence denotes In particular, Imai and coworkers (Imai et al., 2020) estimated a reproduction number of 2.6 (uncertainty range:
T118 346-355 Sentence denotes 1.5–3.5).
T119 356-495 Sentence denotes Depending on the different scenarios and levels of zoonotic exposure, the reproduction number was found to vary from 1.7 to 2.6 to 1.9–4.2.
T120 496-615 Sentence denotes Depending on the different estimates of generation time, the reproduction number oscillated from 1.3 to 2.7 to 1.7–4.3.
T121 616-709 Sentence denotes Based on the level of infectiousness, the reproduction number varied in the range of 1.6–2.9.
T122 710-869 Sentence denotes Finally, assuming that the novel virus would cause more mild-to-moderate cases than the SARS virus, the reproduction number would be 2.0 (uncertainty 1.4–2.3).
T123 870-1047 Sentence denotes Moreover, authors found that only public health interventions blocking over 60% of transmission would be really effective in controlling and containing the coronavirus outbreak.
T124 1048-1361 Sentence denotes Partially based on the findings of Imai and coworkers (Imai et al., 2020) and building on a SIR model, Yu (Yu, 2020) has computed a basic reproduction number of 3.5 and has estimated that only a quarantine rate of infectious population higher than 90% would enable to effectively control the coronavirus outbreak.
T125 1362-1574 Sentence denotes Kucharski and colleagues (Kucharski et al., 2020) designed a stochastic SEIR model, based on the Euler-Maruyama algorithm with a 6-h time-step and with the transmission rate following a geometric Brownian motion.
T126 1575-1664 Sentence denotes Time-varying reproduction number was estimated using the sequential Monte-Carlo approach.
T127 1665-1842 Sentence denotes Authors utilized several datasets to overcome the issue of unreliability of some data sources and to provide real-time estimates, relying on the Poisson probability calculation.
T128 1843-1927 Sentence denotes Transmission was modeled as a random process, fluctuating and varying over the time.
T129 1928-2187 Sentence denotes Similar to the model of Imai and coworkers (Imai et al., 2020), the risk of transmission and the risk of causing a large outbreak were modeled based on a negative binomial offspring distribution, with incubation and infectious period being Erlang distributed.
T130 2188-2323 Sentence denotes Median reproduction number was found to oscillate between 1.6 and 2.9 before the introduction and implementation of travel restriction.
T131 2324-2608 Sentence denotes The study by Wu and collaborators (Wu et al., 2020), based on nowcasting and forecasting approach, estimated a basic reproductive number of 2.68 (95% credible interval or CrI 2.47–2.86) with 75,815 individuals (95% CrI 37,304–130,330) being infected in Wuhan as of January 25th, 2020.
T132 2609-2680 Sentence denotes The epidemics doubling time was found to be 6.4 days (95% CrI 5.8–7.1).
T133 2681-2902 Sentence denotes The dynamics transmission model by Shen and coworkers (Shen, Peng, Xiao, & Zhang, 2020) predicted 8042 (95% CI 4199–11,884) infections and 898 (95% CI 368–1429) deaths, with a fatality rate of 11.02% (95% CI 9.26–12.78%).
T134 2903-3041 Sentence denotes Authors computed a basic reproduction number of 4.71 (95% CI 4.50–4.92), which decreased to 2.08 (95% CI 1.99–2.18) on January 22nd, 2020.
T135 3042-3178 Sentence denotes Based on these estimates, the pandemics outbreak is expected to significantly decrease within 77 [95% CI 75–80] days from its beginning.
T136 3179-3413 Sentence denotes Furthermore, authors found that every one-day reduction in the duration of the period from illness/symptom onset to isolation would reduce the peak population size by 72–84% and the cumulative infected cases and deaths both by 68–80%.
T137 3414-3616 Sentence denotes The study by Majumder and Mandl (Majumder & Mandl, 2020) utilized the “Incidence Decay and Exponential Adjustment” (IDEA) model and led to an estimate of the reproduction number in the range of 2.0–3.1.
T138 3617-3801 Sentence denotes Finally, Riou and Althaus (Riou & Althaus, 2020), using a stochastic model simulating epidemics trajectories, computed a reproduction number of 2.2 (90% high density interval 1.4–3.8).
T139 3802-4042 Sentence denotes Using statistical approaches, namely exponential growth and maximum likelihood techniques, Liu and colleagues (Liu et al., 2020) estimated the value of the reproduction number ranging from 2.90 (95% CI 2.32–3.63) to 2.92 (95% CI 2.28–3.67).
T140 4043-4434 Sentence denotes Zhang and Wang (Zhang & Wang, 2020), employing a Bayesian framework to infer time-calibrated phylogeny from 33 available genomic sequences, found that the time of the most recent common ancestor (MRCA) was December 17th, 2019 (95% highest posterior density interval from December 7th, 2019 to December 23rd, 2019) and that the value of the reproduction number oscillated between 1.1 and 1.6.

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
145 798-808 Species denotes SARS virus Tax:694009
146 1026-1037 Species denotes coronavirus Tax:11118
147 1340-1351 Species denotes coronavirus Tax:11118
148 407-415 Disease denotes zoonotic MESH:D015047
149 2565-2573 Disease denotes infected MESH:D007239
150 2805-2815 Disease denotes infections MESH:D007239
151 2842-2848 Disease denotes deaths MESH:D003643
152 3372-3380 Disease denotes infected MESH:D007239
153 3391-3397 Disease denotes deaths MESH:D003643