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LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T22 1148-1158 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T23 3712-3721 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T59 180-183 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T60 810-811 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T61 959-960 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T62 1068-1070 http://purl.obolibrary.org/obo/CLO_0008693 denotes Rd
T63 1068-1070 http://purl.obolibrary.org/obo/CLO_0008770 denotes Rd
T64 1074-1077 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T65 1159-1162 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T66 1289-1290 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T67 1724-1728 http://purl.obolibrary.org/obo/CLO_0001185 denotes 2018
T68 1831-1832 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T69 1893-1894 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T70 1931-1933 http://purl.obolibrary.org/obo/CLO_0008693 denotes Rd
T71 1931-1933 http://purl.obolibrary.org/obo/CLO_0008770 denotes Rd
T72 2012-2013 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T73 2650-2654 http://purl.obolibrary.org/obo/CLO_0004265 denotes H(t)
T74 2863-2864 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T75 2967-2968 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T76 3164-3165 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T77 3170-3171 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T78 3878-3879 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T79 3880-3881 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T80 4208-4209 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T81 4493-4494 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T82 4519-4520 http://purl.obolibrary.org/obo/CLO_0001021 denotes B

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T29 236-248 Chemical denotes nucleic acid http://purl.obolibrary.org/obo/CHEBI_33696
T30 244-248 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T9 448-460 http://purl.obolibrary.org/obo/GO_0000003 denotes reproduction
T10 715-727 http://purl.obolibrary.org/obo/GO_0000003 denotes reproduction
T11 923-935 http://purl.obolibrary.org/obo/GO_0000003 denotes reproduction
T12 1049-1061 http://purl.obolibrary.org/obo/GO_0000003 denotes reproduction
T13 1211-1223 http://purl.obolibrary.org/obo/GO_0000003 denotes reproduction
T14 1564-1570 http://purl.obolibrary.org/obo/GO_0040007 denotes growth
T15 1664-1670 http://purl.obolibrary.org/obo/GO_0040007 denotes growth
T16 1795-1801 http://purl.obolibrary.org/obo/GO_0040007 denotes growth
T17 1912-1924 http://purl.obolibrary.org/obo/GO_0000003 denotes reproduction
T18 2976-2982 http://purl.obolibrary.org/obo/GO_0040007 denotes growth

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T79 0-7 Sentence denotes Results
T80 8-278 Sentence denotes Since Wuhan was locked down on January 23rd, 2020, almost all regions across the country have imposed travel restriction and, at the same time, the case confirmation speed has been improved due to development of new coronavirus nucleic acid-based detection technologies.
T81 279-543 Sentence denotes Under the scenario of adopting the strongest prevention and control strategy and improving the level of detection and treatment in China, the previously estimated basic reproduction number is no longer suitable for evaluating the epidemic trend in the near future.
T82 544-682 Sentence denotes Therefore, we use the updated data to parameterize the proposed model (Tang et al., 2020) and re-estimate the 2019-nCov transmission risk.
T83 683-813 Sentence denotes To estimate the effective daily reproduction ratio, we initially get the time-dependent contact rate c(t) and δI(t) as Fig. 1 (a).
T84 814-962 Sentence denotes Using the discrete values of contact rate c(t) and diagnose rate δI(t), we can calculate the effective daily reproduction ratio, shown in Fig. 1(b).
T85 963-1180 Sentence denotes It follows that under the strict prevention and control measures, the effective daily reproduction ratio Rd(t) has been less than 1 since January 26th, 2020, that is, the number of new infections has begun to decline.
T86 1181-1447 Sentence denotes Note that the effective daily reproduction ratio declined from January 23rd, 2020 to January 25th, 2020, as a combination of the restrictive measures, including the lock-down of Wuhan, contact tracing followed by quarantine and isolation, that have been implemented.
T87 1448-1678 Sentence denotes In practice, this time variation of the contact and diagnose rates leads to sub-exponential rather than exponential growth dynamics, and hence provides better estimates of epidemic size compared to fully exponential growth models.
T88 1679-1822 Sentence denotes We refer to (Pell, Kuang, Viboud, & Chowell, 2018; Smirnova & Chowell, 2017) for earlier studies on sub-exponential growth of modern epidemics.
T89 1823-1995 Sentence denotes Fig. 1 (A) Time-dependent contact rate c(t) and diagnose rate δI(t); (B) Effective daily reproduction ratio Rd(t), declining due to reduction of c(t) and increase of δI(t).
T90 1996-2122 Sentence denotes Near-casting in a rapidly evolving situation requires timely information of the implementation of public health interventions.
T91 2123-2282 Sentence denotes We emphasize that this information is not only about the policy and decision, but also the implementation which is highly dependent on the resources available.
T92 2283-2531 Sentence denotes We illustrate this with two simulated predictions: one based on the assumption that the interventions implemented during January 23rd, 2020 to January 29th, 2020 will be sustained, and another one based on additional data beyond January 29th, 2020.
T93 2532-2762 Sentence denotes We first plot the time series on the predicted number of reported cases, i.e., the number of hospitalized individuals H(t) and the predicted cumulative cases based on the updated parameters listed in Table 1, and shown in Fig. 2 .
T94 2763-3000 Sentence denotes It shows that the number of hospitalized individuals will peak on around February 4th, 2020 (Fig. 2(A, C)), while the predicted number of cumulative cases will continue to grow for some duration but with a slower growth rate (Fig. 2(D)).
T95 3001-3174 Sentence denotes Moreover, sensitivity analysis revealed that further enhanced measures can reduce the peak value and hence decrease the predicted cumulative case numbers ((Fig. 2(A and B)).
T96 3175-3489 Sentence denotes We caution that increasing the number of susceptible individuals may lead to an increase in the peak value and enlarge the predicted cumulative case numbers ((Fig. 2(C and D)), emphasizing the importance of sustaining the implemented control strategies such as self-isolation in order to reduce the susceptibility.
T97 3490-3658 Sentence denotes We emphasize that the peak time is defined here as the time when the number of confirmed cases reaches the maximum, so sustaining the intervention measures is critical.
T98 3659-4030 Sentence denotes Fig. 2 Predictions and effect of control measures on infection based on assumption that parameters obtained from fitting the data from January 23rd to January 29th, 2020 (and hence the interventions) remain unchanged. (A–B) Decreasing the minimum contact rate after January 29th, 2020; (C–D) Decreasing/increasing the susceptible population size as of January 29th, 2020.
T99 4031-4204 Sentence denotes We repeated the procedure as above but fitted our model to the data of confirmed cases between January 23rd and February 1st, 2020 (Fig. 3 ) and observed the improved δI(t).
T100 4205-4338 Sentence denotes As a result, in comparison with the results in Fig. 2, we obtained higher projected cumulative confirmed cases and delayed peak time.
T101 4339-4558 Sentence denotes Fig. 3 Best fitting of the model to the data of cumulative confirmed cases between January 23rd and February 1st, 2020: the projected number of infected (A), quarantined infected (B), and cumulative confirmed cases (C).

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
114 220-235 Species denotes new coronavirus Tax:2697049
115 654-663 Species denotes 2019-nCov Tax:2697049
117 1148-1158 Disease denotes infections MESH:D007239
119 3712-3721 Disease denotes infection MESH:D007239
122 4483-4491 Disease denotes infected MESH:D007239
123 4509-4517 Disease denotes infected MESH:D007239

2_test

Id Subject Object Predicate Lexical cue
32099934-27913131-47437413 1724-1728 27913131 denotes 2018
T96793 1724-1728 27913131 denotes 2018