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PMC:7026896 / 2999-10448 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
24 186-219 Disease denotes severe acute respiratory syndrome MESH:D045169
25 221-225 Disease denotes SARS MESH:D045169
32 917-922 Species denotes Ebola Tax:1570291
33 1560-1577 Species denotes novel coronavirus Tax:2697049
34 550-554 Disease denotes SARS MESH:D045169
35 798-802 Disease denotes SARS MESH:D045169
36 1109-1140 Disease denotes Infectious Disease Preparedness MESH:D003141
37 1669-1673 Disease denotes SARS MESH:D045169
43 2412-2417 Species denotes Ebola Tax:1570291
44 2123-2127 Disease denotes SARS MESH:D045169
45 2128-2137 Disease denotes infection MESH:D007239
46 2267-2299 Disease denotes Middle East Respiratory Syndrome MESH:D018352
47 2301-2305 Disease denotes MERS MESH:D018352
54 3812-3829 Species denotes novel coronavirus Tax:2697049
55 3291-3309 Disease denotes infectious disease MESH:D003141
56 3955-3961 Disease denotes deaths MESH:D003643
57 4194-4198 Disease denotes SARS MESH:D045169
58 4219-4223 Disease denotes MERS MESH:D018352
59 4271-4278 Disease denotes anxiety MESH:D001007
61 4498-4502 Disease denotes SARS MESH:D045169
67 5706-5714 Species denotes patients Tax:9606
68 5792-5800 Species denotes patients Tax:9606
69 5560-5568 Disease denotes infected MESH:D007239
70 5779-5788 Disease denotes infection MESH:D007239
71 6054-6063 Disease denotes infection MESH:D007239
77 6516-6533 Species denotes novel coronavirus Tax:2697049
78 6241-6245 Disease denotes SARS MESH:D045169
79 6368-6376 Disease denotes infected MESH:D007239
80 6447-6451 Disease denotes MERS MESH:D018352
81 6860-6864 Disease denotes SARS MESH:D045169
88 7073-7078 Species denotes Ebola Tax:1570291
89 7134-7145 Species denotes coronavirus Tax:11118
90 7206-7209 Chemical denotes GDP MESH:D006153
91 7275-7278 Chemical denotes GDP MESH:D006153
92 7051-7055 Disease denotes SARS MESH:D045169
93 7057-7061 Disease denotes MERS MESH:D018352

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T94 7051-7055 SP_10 denotes SARS
T93 7057-7061 SP_9 denotes MERS
T92 7134-7145 NCBITaxon:11118 denotes coronavirus
T91 7229-7239 GO:0065007 denotes controlled
T84 6241-6245 SP_10 denotes SARS
T83 6447-6451 SP_9 denotes MERS
T82 6522-6533 NCBITaxon:11118 denotes coronavirus
T81 6760-6772 GO:0000003 denotes reproductive
T80 6860-6864 SP_10 denotes SARS
T74 6082-6087 GO:0016265 denotes death
T61 4219-4223 SP_9 denotes MERS
T54 2123-2127 SP_10 denotes SARS
T53 2301-2305 SP_9 denotes MERS
T52 2730-2737 SO:0001026 denotes genomic
T51 2758-2763 NCBITaxon:10239 denotes virus
T45 550-554 SP_10 denotes SARS
T44 798-802 SP_10 denotes SARS
T43 917-922 NCBITaxon:10376 denotes Ebola
T42 1385-1393 GO:0065007 denotes managing
T41 1566-1577 NCBITaxon:11118 denotes coronavirus
T40 1669-1673 SP_10 denotes SARS
T39 1823-1828 NCBITaxon:10239 denotes virus
T32 199-210 UBERON:0001004 denotes respiratory
T31 221-225 SP_10 denotes SARS
T30 287-294 GO:0007612 denotes learned
T68 4498-4502 SP_10 denotes SARS
T67 5095-5105 GO:0065007 denotes monitoring
T65 3818-3829 NCBITaxon:11118 denotes coronavirus
T64 3845-3850 NCBITaxon:10239 denotes virus
T63 3955-3961 GO:0016265 denotes deaths
T62 4194-4198 SP_10 denotes SARS

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 5692-5697 Body_part denotes hands http://purl.obolibrary.org/obo/UBERON_0002398

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T5 186-219 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T6 221-225 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T7 550-554 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T8 798-802 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T9 917-922 Disease denotes Ebola http://purl.obolibrary.org/obo/MONDO_0005737
T10 1109-1119 Disease denotes Infectious http://purl.obolibrary.org/obo/MONDO_0005550
T11 1193-1202 Disease denotes Influenza http://purl.obolibrary.org/obo/MONDO_0005812
T12 1669-1673 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T13 2123-2127 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T14 2128-2137 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T15 2412-2417 Disease denotes Ebola http://purl.obolibrary.org/obo/MONDO_0005737
T16 3291-3309 Disease denotes infectious disease http://purl.obolibrary.org/obo/MONDO_0005550
T17 4194-4198 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T18 4271-4278 Disease denotes anxiety http://purl.obolibrary.org/obo/MONDO_0005618|http://purl.obolibrary.org/obo/MONDO_0011918
T20 4498-4502 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T21 5779-5788 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T22 6054-6063 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T23 6241-6245 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T24 6860-6864 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T25 7051-7055 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T26 7073-7078 Disease denotes Ebola http://purl.obolibrary.org/obo/MONDO_0005737

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T27 810-813 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T28 933-946 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organisations
T29 1316-1317 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T30 1537-1540 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T31 1546-1552 http://purl.obolibrary.org/obo/CLO_0001658 denotes active
T32 1743-1744 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T33 1793-1800 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T34 1823-1828 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T35 2758-2763 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T36 2842-2845 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T37 3099-3100 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T38 3595-3596 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T39 3693-3699 http://purl.obolibrary.org/obo/CLO_0001658 denotes active
T40 3845-3850 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T41 3944-3947 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T42 4202-4204 http://purl.obolibrary.org/obo/CLO_0001302 denotes 34
T43 4889-4892 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T44 5306-5309 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T45 5485-5488 http://purl.obolibrary.org/obo/CL_0000784 denotes IPC
T46 5881-5882 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T47 6107-6110 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T48 6217-6218 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T49 6361-6362 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T50 7187-7188 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T51 7260-7261 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 4314-4320 Chemical denotes formal http://purl.obolibrary.org/obo/CHEBI_48341
T2 5485-5488 Chemical denotes IPC http://purl.obolibrary.org/obo/CHEBI_53004
T3 7206-7209 Chemical denotes GDP http://purl.obolibrary.org/obo/CHEBI_17552|http://purl.obolibrary.org/obo/CHEBI_58189
T5 7275-7278 Chemical denotes GDP http://purl.obolibrary.org/obo/CHEBI_17552|http://purl.obolibrary.org/obo/CHEBI_58189

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T3 480-491 http://purl.obolibrary.org/obo/GO_0065007 denotes Regulations

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T18 0-8 Sentence denotes Analysis
T19 9-295 Sentence denotes This outbreak and the response to it illustrate some key issues about how global preparedness and response capacity for outbreaks have evolved over almost two decades since the severe acute respiratory syndrome (SARS) epidemic of 2002/3 and what lessons have, or have not, been learned.
T20 296-498 Sentence denotes It also raises questions about the impact these lessons have had on the way agencies and governments respond to these events and about the role of the WHO and the International Health Regulations (IHR).
T21 500-512 Sentence denotes Coordination
T22 513-752 Sentence denotes One of the critical lessons from the SARS experience was the absolute necessity to be able to coordinate the international resources that are available in an outbreak and to get them focussed on identifying priorities and solving problems.
T23 753-932 Sentence denotes The WHO established the means to do this for SARS and it has since been further developed and integrated into global preparedness, especially after the West Africa Ebola epidemic.
T24 933-1511 Sentence denotes Organisations such as the Global Outbreak Alert and Response Network (GOARN), the Coalition for Epidemic Preparedness Innovations (CEPI), the Global Research Collaboration For Infectious Disease Preparedness (GloPID-R) and the Global Initiative on Sharing All Influenza Data (GISAID) have been supported by the WHO Research Blueprint and its Global Coordinating Mechanism to provide a forum where those with the expertise and capacity to contribute to managing new threats can come together both between and during outbreaks to develop innovative solutions to emerging problems.
T25 1512-1587 Sentence denotes This global coordination has been active in the novel coronavirus outbreak.
T26 1588-1846 Sentence denotes WHO's response system includes three virtual groups based on those developed for SARS to collate real time information to inform real time guidelines, and a first candidate vaccine is ready for laboratory testing within 4 weeks of the virus being identified.
T27 1848-1857 Sentence denotes Reporting
T28 1858-2017 Sentence denotes Another key factor in successfully preventing and managing emerging threats is the rapid and transparent sharing of information between countries and agencies.
T29 2018-2209 Sentence denotes There was extensive criticism of China for its perceived failure to share information about the emerging SARS infection early enough in the outbreak to allow countries to prepare and respond.
T30 2210-2441 Sentence denotes There were similar concerns about information sharing as Middle East Respiratory Syndrome (MERS) emerged and evolved in the Middle East in 2012, particularly in Saudi Arabia, and about the emergence of Ebola in West Africa in 2014.
T31 2442-2656 Sentence denotes On this occasion information sharing seems to have been rapid and effective (while recognising that the information available in the early stages of an outbreak is always less than the global community would like).
T32 2657-2833 Sentence denotes The WHO was notified of the original clustering within days and the full genomic sequence of the new virus was published less than 2 weeks after the cluster was first detected.
T33 2834-2953 Sentence denotes The WHO has expressed its satisfaction with the actions of the Chinese authorities in sharing information with the WHO.
T34 2955-2989 Sentence denotes Journalists and risk communication
T35 2990-3210 Sentence denotes Working with journalists and the media to help them understand the science and epidemiology, particularly in a fast moving event, will improve risk communication to the public and reduce inappropriate concerns and panic.
T36 3211-3469 Sentence denotes While reporting of this outbreak shows signs of the efforts of epidemiologists, infectious disease experts, national and international public health agencies and others engaging with journalists, there are also signs that this is not yet achieving it's goal.
T37 3470-3830 Sentence denotes For example, the public perception is that the increase in case numbers reported daily by the Chinese authorities represents a daily escalation in the epidemic while the reality is that these numbers are also the result of active, aggressive, case finding in China and some of these cases are ‘old’ cases newly recognised as being due to the novel coronavirus.
T38 3831-4070 Sentence denotes Similarly the virus is usually described by the media as ‘deadly’ and although this is true in the sense that it has caused deaths, the nuances of uncertain case fatality rates in the early stages of an outbreak are not being communicated.
T39 4071-4224 Sentence denotes The current estimated case fatality rate seems to be around 3% which is significant but not comparable to the 10% rate for SARS or 34% reported for MERS.
T40 4225-4279 Sentence denotes These misperceptions are still driving public anxiety.
T41 4281-4299 Sentence denotes Informal reporting
T42 4300-4514 Sentence denotes To supplement formal reporting mechanisms between countries and with WHO (including the IHR), the use of informal mechanisms such as media and social media reports was advocated in the light of the SARS experience.
T43 4515-4681 Sentence denotes There are now globally several systems that provide collated information from informal reporting including networks of experts and scanning of media and social media.
T44 4682-4816 Sentence denotes These contribute to, and amplify, epidemic intelligence and are being integrated with national and international surveillance systems.
T45 4817-4930 Sentence denotes The value, and the challenges, of this additional source of information has been evident in the current outbreak.
T46 4931-5139 Sentence denotes The value comes from ensuring that early indications of cases beyond the initial outbreak city have been detected and can supplement the global risk assessment and monitoring of the evolution of the outbreak.
T47 5140-5452 Sentence denotes The challenges lie in the volume and diversity of the information available and the relative lack of verification mechanisms, such that one of these systems (ProMed) has commented that it was becoming increasingly difficult to assimilate the information being supplied [4] and to make meaningful interpretations.
T48 5454-5488 Sentence denotes Health care workers & hospital IPC
T49 5489-5569 Sentence denotes Early in the outbreak it was reported that health workers had not been infected.
T50 5570-5675 Sentence denotes This was reassuring because it is health workers who many times, and inadvertently, amplify transmission.
T51 5676-5854 Sentence denotes Failure to wash hands between patients, for example, can result not only in autoinfection, but also in infection of patients hospitalised for other causes when they provide care.
T52 5855-6039 Sentence denotes Autoinfection is not only a risk for the health worker, but also for their families and the communities in which they live, depending on the transmissibility and means of transmission.
T53 6040-6126 Sentence denotes More recently infection, and at least one death, in health workers has been confirmed.
T54 6127-6193 Sentence denotes Although not unexpected this does add to the epidemiological risk.
T55 6195-6216 Sentence denotes Superspreading events
T56 6217-6422 Sentence denotes A characteristic of the SARS outbreak was the variability of transmissibility between cases and the occurrence of ‘superspreading events’ where a case infected significantly more contacts than the average.
T57 6423-6499 Sentence denotes This was also seen with MERS in the outbreak in the Republic of Korea (RoK).
T58 6500-6636 Sentence denotes In this current novel coronavirus outbreak, such superspreading events have not been documented but the epidemiology is still not clear.
T59 6637-6734 Sentence denotes Confirming whether or not this is happening must be an urgent task for the Chinese investigation.
T60 6735-6930 Sentence denotes Modellers have suggested reproductive rates (R0) of 3.8 (95% confidence interval, 3.6–4.0) [5] and 2.6 (1.5–3.5) [6]; R0 for SARS was estimated at around 3 in the absence of control measures [7].
T61 6932-6941 Sentence denotes Economics
T62 6942-7025 Sentence denotes The economic impact of major outbreaks can be substantial for the affected country.
T63 7026-7094 Sentence denotes This was seen clearly in SARS, MERS in RoK and Ebola in West Africa.
T64 7095-7314 Sentence denotes One analyst estimates that the current coronavirus outbreak's likely impact will range from a 0.8% cut to real GDP if the epidemic is controlled within 3 months, to a 1.9% cost to GDP if the epidemic lasts 9 months [8].
T65 7315-7449 Sentence denotes This may increase substantially in the light of the extended restrictions on movement, and therefore trade and commerce, within China.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T2 4271-4278 Phenotype denotes anxiety http://purl.obolibrary.org/obo/HP_0000739