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PMC:7026896 / 10450-19607 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
97 74-91 Species denotes novel coronavirus Tax:2697049
98 42-61 Disease denotes respiratory illness MESH:D012140
99 272-276 Disease denotes SARS MESH:D045169
101 612-616 Disease denotes SARS MESH:D045169
103 2097-2101 Disease denotes SARS MESH:D045169
107 3316-3321 Species denotes Ebola Tax:1570291
108 4155-4160 Species denotes Ebola Tax:1570291
109 4240-4245 Species denotes Ebola Tax:1570291
111 4517-4522 Species denotes Ebola Tax:1570291
117 5422-5428 Species denotes people Tax:9606
118 5724-5730 Species denotes people Tax:9606
119 5750-5761 Species denotes coronavirus Tax:11118
120 5845-5851 Species denotes people Tax:9606
121 5731-5739 Disease denotes infected MESH:D007239
123 6943-6947 Disease denotes SARS MESH:D045169
127 7210-7215 Species denotes Ebola Tax:1570291
128 7191-7195 Disease denotes SARS MESH:D045169
129 7201-7205 Disease denotes MERS MESH:D018352
131 9024-9030 Species denotes people Tax:9606

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T129 42-53 UBERON:0001004 denotes respiratory
T128 80-91 NCBITaxon:11118 denotes coronavirus
T127 272-276 SP_10 denotes SARS
T126 612-616 SP_10 denotes SARS
T125 1258-1267 GO:0043335 denotes unfolding
T124 2097-2101 SP_10 denotes SARS
T123 5422-5428 NCBITaxon:9606 denotes people
T122 5476-5481 NCBITaxon:10239 denotes virus
T121 5724-5730 NCBITaxon:9606 denotes people
T120 5750-5761 NCBITaxon:11118 denotes coronavirus
T119 5845-5851 NCBITaxon:9606 denotes people
T118 6943-6947 SP_10 denotes SARS
T117 7191-7195 SP_10 denotes SARS
T116 7201-7205 SP_9 denotes MERS
T115 9024-9030 NCBITaxon:9606 denotes people
T114 9098-9103 NCBITaxon:10239 denotes virus

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T2 7699-7703 Body_part denotes back http://purl.org/sig/ont/fma/fma25056

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T2 5331-5336 Body_part denotes scale http://purl.obolibrary.org/obo/UBERON_0002542
T3 6176-6181 Body_part denotes scale http://purl.obolibrary.org/obo/UBERON_0002542
T4 7693-7698 Body_part denotes scale http://purl.obolibrary.org/obo/UBERON_0002542

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T27 272-276 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T28 612-616 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T29 2097-2101 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T30 3316-3321 Disease denotes Ebola http://purl.obolibrary.org/obo/MONDO_0005737
T31 4155-4160 Disease denotes Ebola http://purl.obolibrary.org/obo/MONDO_0005737
T32 4240-4245 Disease denotes Ebola http://purl.obolibrary.org/obo/MONDO_0005737
T33 4517-4522 Disease denotes Ebola http://purl.obolibrary.org/obo/MONDO_0005737
T34 5769-5779 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T35 6943-6947 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T36 7191-7195 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T37 7210-7215 Disease denotes Ebola http://purl.obolibrary.org/obo/MONDO_0005737

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T52 28-29 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T53 72-73 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T54 103-104 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T55 105-109 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T56 777-782 http://purl.obolibrary.org/obo/CLO_0009985 denotes focus
T57 1275-1278 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T58 1430-1431 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T59 1567-1568 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T60 1673-1674 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T61 1917-1918 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T62 2325-2326 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T63 2583-2584 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T64 2659-2660 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T65 2706-2709 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T66 2891-2892 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T67 2982-2983 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T68 3224-3225 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T69 3241-3242 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T70 3261-3262 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T71 3280-3283 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T72 3385-3388 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T73 3452-3453 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T74 3492-3493 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T75 3603-3604 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T76 3682-3683 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T77 3706-3707 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T78 3727-3728 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T79 3757-3758 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T80 4017-4018 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T81 4134-4135 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T82 4179-4182 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T83 4318-4319 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T84 4650-4651 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T85 4668-4669 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T86 4833-4834 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T87 5476-5481 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T88 6265-6266 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T89 6462-6465 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T90 7067-7068 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T91 7270-7271 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T92 7341-7342 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T93 7786-7787 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T94 7973-7974 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T95 8717-8724 http://www.ebi.ac.uk/efo/EFO_0000876 denotes extreme
T96 9098-9103 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T4 6588-6597 http://purl.obolibrary.org/obo/GO_0006810 denotes transport
T5 9081-9090 http://purl.obolibrary.org/obo/GO_0007610 denotes behaviour

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T66 0-10 Sentence denotes Discussion
T67 11-178 Sentence denotes The emergence of a significant respiratory illness linked to a novel coronavirus represents a test of the global capacity to detect and mange emerging disease threats.
T68 179-277 Sentence denotes Its emergence in China adds an additional dimension in the light of previous experience with SARS.
T69 278-435 Sentence denotes The timing of the outbreak immediately before the Chinese Lunar New Year with its attendant population movements adds extra risk and urgency to the response.
T70 436-646 Sentence denotes The rapid sharing of information in this outbreak and the speed of the coordinated response both in the country and internationally suggest that lessons have been learned from SARS that improve global capacity.
T71 647-840 Sentence denotes The international networks and forums that now exist have facilitated the bringing together of expertise from around the world to focus research and development efforts and maximise the impact.
T72 841-1148 Sentence denotes At this early stage in the outbreak information remains incomplete and key clinical and epidemiological questions have not yet been answered, but the deficit seems to be due more to the constraints of investigating an emerging disease than to any unwillingness to engage and share information with partners.
T73 1149-1224 Sentence denotes There are some indications of areas where further improvement is necessary.
T74 1225-1611 Sentence denotes The global media response to the unfolding events has been relatively balanced and informed but the nuances of the evolving situation have not been critically examined in partnership with the media and as a result the public perception of the risk may be exaggerated – although it of course remains possible that the outbreak will develop in a way that matches up to the perceived risk.
T75 1612-1901 Sentence denotes The lack of appreciation of the uncertainties in determining a meaningful case fatality rate and the significance of ascertainment bias at the beginning of an outbreak, along with the impact of aggressive case finding on case numbers, are examples of where understanding could be improved.
T76 1902-2296 Sentence denotes This is always a challenging process when balancing the resources focussed on analysing the situation on the ground with resources directed at interpreting the information for journalists but in SARS, the R0 was seen to decrease in response to information reaching the public and the public then adopting risk reduction actions [6]; so accurate public risk communication is critical to success.
T77 2297-2401 Sentence denotes It would be helpful to find a forum where this can be explored with the media community after the event.
T78 2402-2638 Sentence denotes The increase in access to early information from diverse sources including media and social media adds an important dimension to identifying and tracking new events globally and is a key part of the overall epidemic intelligence system.
T79 2639-2696 Sentence denotes However, it is also a potential source of disinformation.
T80 2697-2966 Sentence denotes When, as has been seen in this outbreak, the volume of information coming in exceeds any capacity to collate and analyse it and to attempt to cross-reference and verify separate items, there is a risk that the information fuels speculation and media and public concern.
T81 2967-3211 Sentence denotes Again there is a fine balance between information that encourages appropriate risk avoidance actions and information that encourages inappropriate actions; however the public health is usually better served by more information rather than less.
T82 3212-3430 Sentence denotes The role of a declaration of a PHEIC in managing a serious outbreak has been questioned in the light of Ebola in West Africa and in the Democratic Republic of Congo [9] and has been challenged again with this outbreak.
T83 3431-3714 Sentence denotes The binary nature of a PHEIC declaration (either an event is a PHEIC or it isn't – there are no intermediate options) and the specificity of the three defined criteria for a PHEIC have caused difficulty for Emergency Committees in considering whether a given event should be a PHEIC.
T84 3715-3949 Sentence denotes The lack of a clear understanding of what a PHEIC declaration is meant to achieve adds to the Emergency Committee's difficulties, as does the relative paucity of clinical and epidemiological answers at this stage of the investigation.
T85 3950-4146 Sentence denotes In this instance the Emergency Committee were divided in coming to a conclusion but decided on balance that the current situation, although an emergency, should not as yet be declared a PHEIC [2].
T86 4147-4339 Sentence denotes As with Ebola in the DRC, there has been criticism of the WHO for this decision but, as with Ebola, it is not immediately clear what would be different in the response if a PHEIC was declared.
T87 4340-4649 Sentence denotes The WHO is working on improving the way in which Emergency Committees develop their advice for the Director General but, as recommended by this Emergency Committee and the post-Ebola IHR Review Committee in 2015, the development of an intermediate alert alongside WHO's risk assessment process may be helpful.
T88 4650-4843 Sentence denotes A key function of a PHEIC declaration is that it is the (only) gateway to the WHO Temporary Recommendations on possible travel and trade restrictions to limit international spread of a disease.
T89 4844-5065 Sentence denotes In this case several countries globally had already implemented entry screening at airports and China had begun closing down international travel from Wuhan before the Emergency Committee had finished their deliberations.
T90 5066-5239 Sentence denotes While the WHO would not, and could not, interfere with the sovereign decisions of member states, the lack of influence on travel and trade decisions could prove problematic.
T91 5240-5353 Sentence denotes Alongside the speed of the response in this outbreak, we have seen dramatic changes in the scale of the response.
T92 5354-5499 Sentence denotes The imposition of very extensive quarantine measures on millions of people as an attempt to break the transmission of the virus is unprecedented.
T93 5500-5696 Sentence denotes We do not know whether they will be effective; indeed we do not know how we will determine if they have been effective – what end point can we measure that will provide an answer to that question?
T94 5697-5986 Sentence denotes If recent suggestions that people infected with this coronavirus may be infectious while incubating or asymptomatic, and the reports that up to 5 m people left Wuhan before the travel restrictions were imposed, are confirmed, the efficacy of these control measures will be more challenged.
T95 5987-6197 Sentence denotes Given the likely impact on at least the Chinese economy and probably the global economy, it will be important to understand the role and the effectiveness of public health measures on this scale for the future.
T96 6198-6388 Sentence denotes However, the imposition of these dramatic measures does also raise a wider question: if there is an impact from these measures, what other countries would (or could) implement such measures?
T97 6389-6508 Sentence denotes Would other countries accept the self-imposed economic damage that China has accepted to try and contain this outbreak?
T98 6509-6726 Sentence denotes Is it reasonable to consider that national governments would close down public transport into and out of London, New York or Paris in the week before Christmas even if it were shown to be an effective control measure?
T99 6727-6821 Sentence denotes These decisions and questions cross the interface between public health, science and politics.
T100 6822-7018 Sentence denotes The response to this outbreak in China was inevitably influenced by the historical reaction to the country's response to SARS and the world's suspicion of China's lack of cooperation at that time.
T101 7019-7150 Sentence denotes The current response is therefore framed within a context of not wanting to be seen to be behaving in the same way with this event.
T102 7151-7370 Sentence denotes This may indicate another impact of the SARS (and MERS and Ebola) experience on the response to subsequent outbreaks – a tendency to look at worst case scenarios and respond accordingly and a fear of ‘getting it wrong’.
T103 7371-7624 Sentence denotes This can deter leaders at all levels, from outbreak teams to national governments, from making judgements when all the information they would like is not available in case those judgments turn out to be wrong when the full information becomes available.
T104 7625-7763 Sentence denotes In emergency response it is generally better to over-react and then scale back if necessary rather than under-react and then act too late.
T105 7764-8002 Sentence denotes Response should be on a ‘no regrets’ basis – make the best decisions possible on the basis of the best information and science available at the time but do not judge or criticise if later information suggests a different course of action.
T106 8003-8224 Sentence denotes The early response must recognise what is known and what is not known and look at what of the unknowns can reasonably be estimated by reference to previous outbreaks, similar pathogens, early reporting and modelling, etc.
T107 8225-8330 Sentence denotes The risk assessment and response can then be modified and refined as information on the unknowns evolves.
T108 8331-8470 Sentence denotes Key to that approach, however, is confidence that decisions will not be criticised based on information that was not available at the time.
T109 8471-8631 Sentence denotes It is also important to be ready to change decisions when the available information changes – something that both scientists and politicians can find difficult.
T110 8632-8872 Sentence denotes In that context, China should not be judged for implementing what might appear to be extreme measures but China should also be prepared to discontinue the measures quickly if evidence suggests they are not the best way to solve the problem.
T111 8873-9104 Sentence denotes By closing airports the international spread from Wuhan may be decreased, but success will depend on how effective the measures really are at stopping people moving out of the affected area as well as on the behaviour of the virus.
T112 9105-9157 Sentence denotes As always, only time will tell – but time is scarce.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T3 42-61 Phenotype denotes respiratory illness http://purl.obolibrary.org/obo/HP_0002086