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PMC:7019868 / 15071-17051 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
264 128-131 Species denotes pig Tax:9823
265 396-404 Chemical denotes formalin MESH:D005557
266 412-420 Chemical denotes paraffin MESH:D010232
267 477-488 Chemical denotes hematoxylin MESH:D006416
268 493-498 Chemical denotes eosin MESH:D004801
269 500-503 Chemical denotes H&E
288 691-695 Species denotes PEDV Tax:28295
289 1138-1142 Species denotes goat Tax:9925
290 1302-1306 Species denotes PEDV Tax:28295
291 1363-1367 Species denotes goat Tax:9925
292 1520-1526 Species denotes rabbit Tax:9986
293 1527-1532 Species denotes mouse Tax:10090
294 714-722 Chemical denotes formalin MESH:D005557
295 729-737 Chemical denotes paraffin MESH:D010232
296 795-801 Chemical denotes xylene MESH:D014992
297 834-841 Chemical denotes ethanol MESH:D000431
298 989-1009 Chemical denotes Tris-buffered saline
299 1020-1028 Chemical denotes Tween 20 MESH:D011136
300 1030-1034 Chemical denotes TBST
301 1448-1452 Chemical denotes TBST
302 1558-1561 Chemical denotes DAB
303 1668-1690 Chemical denotes 3, 3′-diaminobenzidine MESH:D015100
304 1692-1695 Chemical denotes DAB
305 1789-1800 Chemical denotes hematoxylin MESH:D006416

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T73 306-314 Body_part denotes Duodenum http://purl.org/sig/ont/fma/fma7206
T74 316-323 Body_part denotes jejunum http://purl.org/sig/ont/fma/fma7207
T75 325-330 Body_part denotes ileum http://purl.org/sig/ont/fma/fma7208
T76 332-337 Body_part denotes cecum http://purl.org/sig/ont/fma/fma14541
T77 339-344 Body_part denotes colon http://purl.org/sig/ont/fma/fma14543
T78 346-352 Body_part denotes rectum http://purl.org/sig/ont/fma/fma14544
T79 357-379 Body_part denotes mesenteric lymph nodes http://purl.org/sig/ont/fma/fma277405
T80 747-754 Body_part denotes tissues http://purl.org/sig/ont/fma/fma9637
T81 921-925 Body_part denotes Cell http://purl.org/sig/ont/fma/fma68646
T82 1037-1043 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T83 1143-1148 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T84 1309-1317 Body_part denotes antibody http://purl.org/sig/ont/fma/fma62871
T85 1368-1373 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T86 1533-1547 Body_part denotes immunoglobulin http://purl.org/sig/ont/fma/fma62871

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T8 306-314 Body_part denotes Duodenum http://purl.obolibrary.org/obo/UBERON_0002114
T9 316-323 Body_part denotes jejunum http://purl.obolibrary.org/obo/UBERON_0002115
T10 325-330 Body_part denotes ileum http://purl.obolibrary.org/obo/UBERON_0002116
T11 339-344 Body_part denotes colon http://purl.obolibrary.org/obo/UBERON_0001155
T12 346-352 Body_part denotes rectum http://purl.obolibrary.org/obo/UBERON_0001052
T13 357-379 Body_part denotes mesenteric lymph nodes http://purl.obolibrary.org/obo/UBERON_0002509
T14 368-373 Body_part denotes lymph http://purl.obolibrary.org/obo/UBERON_0002391
T15 1037-1043 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T16 1143-1148 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T17 1368-1373 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T157 100-105 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T158 153-161 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humanely
T159 301-303 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T160 316-323 http://purl.obolibrary.org/obo/UBERON_0002115 denotes jejunum
T161 325-330 http://purl.obolibrary.org/obo/UBERON_0002116 denotes ileum
T162 339-344 http://purl.obolibrary.org/obo/UBERON_0001155 denotes colon
T163 346-352 http://purl.obolibrary.org/obo/UBERON_0001052 denotes rectum
T164 346-352 http://purl.obolibrary.org/obo/UBERON_0006866 denotes rectum
T165 357-379 http://purl.obolibrary.org/obo/UBERON_0002509 denotes mesenteric lymph nodes
T166 921-925 http://purl.obolibrary.org/obo/GO_0005623 denotes Cell
T167 1138-1142 http://purl.obolibrary.org/obo/NCBITaxon_9925 denotes goat
T168 1213-1221 http://purl.obolibrary.org/obo/CLO_0001658 denotes activity
T169 1239-1246 http://purl.obolibrary.org/obo/SO_0000418 denotes signals
T170 1322-1327 http://purl.obolibrary.org/obo/CLO_0001757 denotes 1, at
T171 1328-1329 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T172 1363-1367 http://purl.obolibrary.org/obo/NCBITaxon_9925 denotes goat
T173 1527-1532 http://purl.obolibrary.org/obo/CLO_0007836 denotes mouse
T174 1899-1906 http://purl.obolibrary.org/obo/SO_0000418 denotes signals

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T84 114-119 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T85 142-147 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T86 477-488 Chemical denotes hematoxylin http://purl.obolibrary.org/obo/CHEBI_51686
T87 696-703 Chemical denotes antigen http://purl.obolibrary.org/obo/CHEBI_59132
T88 795-801 Chemical denotes xylene http://purl.obolibrary.org/obo/CHEBI_27338
T89 834-841 Chemical denotes ethanol http://purl.obolibrary.org/obo/CHEBI_16236
T90 860-867 Chemical denotes epitope http://purl.obolibrary.org/obo/CHEBI_53000
T91 895-902 Chemical denotes antigen http://purl.obolibrary.org/obo/CHEBI_59132
T92 989-993 Chemical denotes Tris http://purl.obolibrary.org/obo/CHEBI_9754
T93 1020-1028 Chemical denotes Tween 20 http://purl.obolibrary.org/obo/CHEBI_53424
T94 1072-1080 Chemical denotes hydrogen http://purl.obolibrary.org/obo/CHEBI_49637
T95 1266-1273 Chemical denotes antigen http://purl.obolibrary.org/obo/CHEBI_59132
T96 1319-1321 Chemical denotes DE http://purl.obolibrary.org/obo/CHEBI_73828
T97 1558-1561 Chemical denotes DAB http://purl.obolibrary.org/obo/CHEBI_90994
T98 1692-1695 Chemical denotes DAB http://purl.obolibrary.org/obo/CHEBI_90994
T99 1697-1706 Chemical denotes chromogen http://purl.obolibrary.org/obo/CHEBI_75050
T100 1789-1800 Chemical denotes hematoxylin http://purl.obolibrary.org/obo/CHEBI_51686

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T38 1202-1221 http://purl.obolibrary.org/obo/GO_0004601 denotes peroxidase activity

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T111 0-6 Sentence denotes 2.5.2.
T112 7-46 Sentence denotes Histopathology and Immunohistochemistry
T113 47-305 Sentence denotes At three days post-inoculation, three pigs from each virus-treated group and one pig from mock group were humanely euthanized by electrocution followed by exsanguination for histopathological and immunohistochemical assessments, as described previously [22].
T114 306-623 Sentence denotes Duodenum, jejunum, ileum, cecum, colon, rectum and mesenteric lymph nodes were collected, formalin-fixed, paraffin-embedded, sectioned at 4 μm, and stained routinely with hematoxylin and eosin (H&E) for morphometric analysis by assessing the ratio of villi height to crypt depth blindly by one veterinary pathologist.
T115 624-704 Sentence denotes Immunohistochemistry was performed to evaluate the distribution of PEDV antigen.
T116 705-952 Sentence denotes Briefly, formalin-fixed paraffin-embedded tissues were sectioned at 4 μm, deparaffined in xylene, rehydrated in serially diluted ethanol, and proceeded to epitope retrieval with the Trilogy antigen retrieval system (Cell Marque, Rocklin, CA, USA).
T117 953-1261 Sentence denotes After being washed three times with Tris-buffered saline plus 0.1% Tween 20 (TBST), tissue slides were treated with 3% hydrogen peroxidase (KYB, New Taipei City, Taiwan) and 10% normal goat serum (Dako, Carpinteria, CA, USA) to block the endogenous peroxidase activity and non-specific signals, respectively.
T118 1262-1453 Sentence denotes For antigen detection, an in-house anti-PEDV N antibody, DE-1, at a dilution of 1:1000 in 10% normal goat serum was applied to the slides for 1 h at RT followed by three times wash with TBST.
T119 1454-1752 Sentence denotes The first antibodies were then captured using the polyclonal anti-rabbit/mouse immunoglobulin, EnVision-DAB+ system (Agilent Technologies, Santa Clara, CA, USA) at RT for 1 h and color was developed afterward with 3, 3′-diaminobenzidine (DAB) chromogen (Agilent Technologies, Santa Clara, CA, USA).
T120 1753-1889 Sentence denotes The slides were counterstained with hematoxylin (MUTO, Tokyo, Japan), mounted in Entellan (Merck, Darmstadt, Germany) and cover slipped.
T121 1890-1980 Sentence denotes Positive signals were visualized under an inverted light microscope (Nikon, Tokyo, Japan).

2_test

Id Subject Object Predicate Lexical cue
31905842-30089548-144353227 301-303 30089548 denotes 22