> top > docs > PMC:7017962 > spans > 76-13568 > annotations

PMC:7017962 / 76-13568 JSONTXT

Annnotations TAB JSON ListView MergeView

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
258 10700-10709 Species denotes 2019-nCoV Tax:2697049
30 229-237 Species denotes patients Tax:9606
31 266-283 Species denotes novel coronavirus Tax:2697049
32 285-294 Species denotes 2019-nCoV Tax:2697049
33 812-819 Species denotes persons Tax:9606
34 1026-1033 Species denotes persons Tax:9606
35 1126-1133 Species denotes persons Tax:9606
36 1182-1189 Species denotes persons Tax:9606
37 1206-1215 Species denotes 2019-nCoV Tax:2697049
38 1229-1236 Species denotes persons Tax:9606
39 1338-1347 Species denotes 2019-nCoV Tax:2697049
40 1348-1355 Species denotes patient Tax:9606
41 1436-1443 Species denotes persons Tax:9606
42 1502-1509 Species denotes persons Tax:9606
43 1522-1531 Species denotes 2019-nCoV Tax:2697049
44 1732-1740 Species denotes patients Tax:9606
45 1893-1902 Species denotes 2019-nCoV Tax:2697049
46 1935-1942 Species denotes persons Tax:9606
47 1979-1987 Species denotes patients Tax:9606
48 117-126 Disease denotes pneumonia MESH:D011014
49 243-252 Disease denotes pneumonia MESH:D011014
50 840-859 Disease denotes 2019-nCoV infection MESH:C000657245
51 1060-1079 Disease denotes 2019-nCoV infection MESH:C000657245
52 1469-1488 Disease denotes 2019-nCoV infection MESH:C000657245
53 1673-1682 Disease denotes infection MESH:D007239
54 1754-1773 Disease denotes 2019-nCoV infection MESH:C000657245
55 2014-2033 Disease denotes 2019-nCoV infection MESH:C000657245
67 2192-2201 Species denotes 2019-nCoV Tax:2697049
68 2259-2268 Species denotes 2019-nCoV Tax:2697049
69 2907-2914 Species denotes patient Tax:9606
70 3032-3041 Species denotes 2019-nCoV Tax:2697049
71 3089-3096 Species denotes persons Tax:9606
72 3213-3222 Species denotes 2019-nCoV Tax:2697049
73 3366-3375 Species denotes 2019-nCoV Tax:2697049
74 2688-2693 Disease denotes fever MESH:D005334
75 2716-2741 Disease denotes respiratory tract illness MESH:D012140
76 2749-2754 Disease denotes cough MESH:D003371
77 2941-2960 Disease denotes 2019-nCoV infection MESH:C000657245
80 3441-3450 Species denotes 2019-nCoV Tax:2697049
81 3785-3794 Species denotes 2019-nCoV Tax:2697049
90 4094-4101 Species denotes persons Tax:9606
91 4135-4142 Species denotes persons Tax:9606
92 4306-4313 Species denotes persons Tax:9606
93 4466-4473 Species denotes persons Tax:9606
94 4609-4616 Species denotes persons Tax:9606
95 4832-4842 Species denotes outpatient Tax:9606
96 4879-4886 Species denotes persons Tax:9606
97 5025-5032 Species denotes persons Tax:9606
101 5116-5123 Species denotes persons Tax:9606
102 5133-5155 Species denotes 2019 novel coronavirus Tax:2697049
103 5157-5166 Species denotes 2019-nCoV Tax:2697049
105 5381-5390 Species denotes 2019-nCoV Tax:2697049
109 5566-5573 Species denotes persons Tax:9606
110 5614-5636 Species denotes 2019 novel coronavirus Tax:2697049
111 5638-5647 Species denotes 2019-nCoV Tax:2697049
119 5922-5931 Species denotes 2019-nCoV Tax:2697049
120 6322-6329 Species denotes patient Tax:9606
121 6526-6535 Species denotes 2019-nCoV Tax:2697049
122 6536-6543 Species denotes patient Tax:9606
123 6135-6140 Disease denotes fever MESH:D005334
124 6194-6199 Disease denotes Cough MESH:D003371
125 6203-6222 Disease denotes shortness of breath MESH:D004417
128 5792-5799 Species denotes persons Tax:9606
129 5811-5855 Disease denotes 2019 novel coronavirus (2019-nCoV) infection MESH:C000657245
132 6868-6877 Species denotes 2019-nCoV Tax:2697049
133 6907-6912 Disease denotes death MESH:D003643
135 6943-6950 Species denotes persons Tax:9606
137 7105-7112 Species denotes persons Tax:9606
141 7244-7251 Species denotes persons Tax:9606
142 7307-7316 Species denotes 2019-nCoV Tax:2697049
143 7317-7324 Species denotes patient Tax:9606
147 7439-7446 Species denotes persons Tax:9606
148 7531-7540 Species denotes 2019-nCoV Tax:2697049
149 7541-7548 Species denotes patient Tax:9606
152 7735-7744 Species denotes 2019-nCoV Tax:2697049
153 7745-7752 Species denotes patient Tax:9606
175 7788-7795 Species denotes persons Tax:9606
176 8070-8077 Species denotes persons Tax:9606
177 8132-8139 Species denotes persons Tax:9606
178 8234-8261 Species denotes respiratory syncytial virus Tax:12814
179 8279-8287 Species denotes patients Tax:9606
180 8366-8373 Species denotes patient Tax:9606
181 8554-8561 Species denotes persons Tax:9606
182 8599-8607 Species denotes patients Tax:9606
183 8778-8787 Species denotes 2019-nCoV Tax:2697049
184 8788-8795 Species denotes patient Tax:9606
185 7959-7970 Species denotes respiratory Tax:12814
186 8183-8194 Species denotes respiratory Tax:12814
187 7855-7860 Disease denotes fever MESH:D005334
188 7923-7928 Disease denotes cough MESH:D003371
189 7932-7951 Disease denotes shortness of breath MESH:D004417
190 7993-8004 Disease denotes sore throat MESH:D010608
191 8006-8016 Disease denotes rhinorrhea MESH:D012818
192 8095-8100 Disease denotes cough MESH:D003371
193 8104-8123 Disease denotes shortness of breath MESH:D004417
194 8482-8487 Disease denotes death MESH:D003643
195 8634-8653 Disease denotes 2019-nCoV infection MESH:C000657245
204 8837-8844 Species denotes persons Tax:9606
205 8915-8922 Species denotes persons Tax:9606
206 8955-8962 Species denotes persons Tax:9606
207 9015-9023 Species denotes patients Tax:9606
208 9050-9059 Species denotes 2019-nCoV Tax:2697049
209 8880-8899 Disease denotes 2019-nCoV infection MESH:C000657245
210 9108-9113 Disease denotes fever MESH:D005334
211 9142-9147 Disease denotes cough MESH:D003371
221 9181-9188 Species denotes persons Tax:9606
222 9201-9210 Species denotes 2019-nCoV Tax:2697049
223 9258-9267 Species denotes 2019-nCoV Tax:2697049
224 9385-9392 Species denotes persons Tax:9606
225 9461-9470 Species denotes 2019-nCoV Tax:2697049
226 9638-9645 Species denotes persons Tax:9606
227 9677-9686 Species denotes 2019-nCoV Tax:2697049
228 9408-9427 Disease denotes 2019-nCoV infection MESH:C000657245
229 9577-9596 Disease denotes 2019-nCoV infection MESH:C000657245
235 9811-9818 Species denotes persons Tax:9606
236 9830-9839 Species denotes 2019-nCoV Tax:2697049
237 10228-10235 Species denotes persons Tax:9606
238 10250-10259 Species denotes 2019-nCoV Tax:2697049
239 9983-10002 Disease denotes 2019-nCoV infection MESH:C000657245
244 10408-10417 Species denotes 2019-nCoV Tax:2697049
245 10423-10433 Species denotes collection Tax:1768868
246 10503-10510 Species denotes persons Tax:9606
247 10522-10531 Species denotes 2019-nCoV Tax:2697049
259 10836-10845 Species denotes 2019-nCoV Tax:2697049
260 10870-10877 Species denotes persons Tax:9606
261 10900-10908 Species denotes patients Tax:9606
262 10956-10963 Species denotes persons Tax:9606
263 11025-11032 Species denotes persons Tax:9606
264 11229-11238 Species denotes 2019-nCoV Tax:2697049
265 10935-10954 Disease denotes 2019-nCoV infection MESH:C000657245
266 11090-11095 Disease denotes fever MESH:D005334
267 11106-11131 Disease denotes respiratory tract illness MESH:D012140
281 11905-11914 Species denotes 2019-nCoV Tax:2697049
282 11921-11928 Species denotes persons Tax:9606
283 12127-12134 Species denotes persons Tax:9606
284 12139-12148 Species denotes 2019-nCoV Tax:2697049
285 12254-12261 Species denotes persons Tax:9606
286 12379-12386 Species denotes persons Tax:9606
287 12419-12427 Species denotes patients Tax:9606
288 11946-11955 Disease denotes infection MESH:D007239
289 12221-12238 Disease denotes 2019-nCoV illness MESH:C000657245
290 12267-12272 Disease denotes fever MESH:D005334
291 12283-12308 Disease denotes respiratory tract illness MESH:D012140
292 12454-12473 Disease denotes 2019-nCoV infection MESH:C000657245
293 12569-12586 Disease denotes 2019-nCoV illness MESH:C000657245
297 12845-12852 Species denotes persons Tax:9606
298 12714-12753 Disease denotes novel coronavirus (2019-nCoV) infection MESH:C000657245
299 12865-12884 Disease denotes 2019-nCoV infection MESH:C000657245
305 13002-13009 Species denotes persons Tax:9606
306 13050-13059 Species denotes 2019-nCoV Tax:2697049
307 13147-13156 Species denotes 2019-nCoV Tax:2697049
308 13157-13164 Species denotes patient Tax:9606
309 13201-13210 Species denotes 2019-nCoV Tax:2697049
314 13352-13361 Species denotes 2019-nCoV Tax:2697049
315 13422-13429 Species denotes persons Tax:9606
316 13452-13461 Species denotes 2019-nCoV Tax:2697049
317 13462-13470 Species denotes patients Tax:9606

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 2710-2733 Body_part denotes lower respiratory tract http://purl.org/sig/ont/fma/fma45662
T2 7953-7976 Body_part denotes Upper respiratory tract http://purl.org/sig/ont/fma/fma45661
T3 7998-8004 Body_part denotes throat http://purl.org/sig/ont/fma/fma228738
T4 11100-11123 Body_part denotes lower respiratory tract http://purl.org/sig/ont/fma/fma45662
T5 12277-12300 Body_part denotes lower respiratory tract http://purl.org/sig/ont/fma/fma45662

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 2710-2733 Body_part denotes lower respiratory tract http://purl.obolibrary.org/obo/UBERON_0001558
T2 2716-2733 Body_part denotes respiratory tract http://purl.obolibrary.org/obo/UBERON_0000065
T3 7953-7976 Body_part denotes Upper respiratory tract http://purl.obolibrary.org/obo/UBERON_0001557
T4 7959-7976 Body_part denotes respiratory tract http://purl.obolibrary.org/obo/UBERON_0000065
T5 7998-8004 Body_part denotes throat http://purl.obolibrary.org/obo/UBERON_0000341
T6 11100-11123 Body_part denotes lower respiratory tract http://purl.obolibrary.org/obo/UBERON_0001558
T7 11106-11123 Body_part denotes respiratory tract http://purl.obolibrary.org/obo/UBERON_0000065
T8 12277-12300 Body_part denotes lower respiratory tract http://purl.obolibrary.org/obo/UBERON_0001558
T9 12283-12300 Body_part denotes respiratory tract http://purl.obolibrary.org/obo/UBERON_0000065

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 117-126 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T2 243-252 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T3 840-859 Disease denotes 2019-nCoV infection http://purl.obolibrary.org/obo/MONDO_0100096
T4 850-859 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T5 1060-1079 Disease denotes 2019-nCoV infection http://purl.obolibrary.org/obo/MONDO_0100096
T6 1070-1079 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T7 1469-1488 Disease denotes 2019-nCoV infection http://purl.obolibrary.org/obo/MONDO_0100096
T8 1479-1488 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T9 1673-1682 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T10 1754-1773 Disease denotes 2019-nCoV infection http://purl.obolibrary.org/obo/MONDO_0100096
T11 1764-1773 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T12 2014-2033 Disease denotes 2019-nCoV infection http://purl.obolibrary.org/obo/MONDO_0100096
T13 2024-2033 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T14 2941-2960 Disease denotes 2019-nCoV infection http://purl.obolibrary.org/obo/MONDO_0100096
T15 2951-2960 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T16 5834-5855 Disease denotes (2019-nCoV) infection http://purl.obolibrary.org/obo/MONDO_0100096
T17 5846-5855 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T18 7993-8004 Disease denotes sore throat http://purl.obolibrary.org/obo/MONDO_0002258
T19 8221-8230 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T20 8634-8653 Disease denotes 2019-nCoV infection http://purl.obolibrary.org/obo/MONDO_0100096
T21 8644-8653 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T22 8880-8899 Disease denotes 2019-nCoV infection http://purl.obolibrary.org/obo/MONDO_0100096
T23 8890-8899 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T24 9408-9427 Disease denotes 2019-nCoV infection http://purl.obolibrary.org/obo/MONDO_0100096
T25 9418-9427 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T26 9577-9596 Disease denotes 2019-nCoV infection http://purl.obolibrary.org/obo/MONDO_0100096
T27 9587-9596 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T28 9983-10002 Disease denotes 2019-nCoV infection http://purl.obolibrary.org/obo/MONDO_0100096
T29 9993-10002 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T30 10935-10954 Disease denotes 2019-nCoV infection http://purl.obolibrary.org/obo/MONDO_0100096
T31 10945-10954 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T32 11946-11955 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T33 12454-12473 Disease denotes 2019-nCoV infection http://purl.obolibrary.org/obo/MONDO_0100096
T34 12464-12473 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T35 12732-12753 Disease denotes (2019-nCoV) infection http://purl.obolibrary.org/obo/MONDO_0100096
T36 12744-12753 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T37 12865-12884 Disease denotes 2019-nCoV infection http://purl.obolibrary.org/obo/MONDO_0100096
T38 12875-12884 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 95-96 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T2 264-265 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T3 478-480 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T4 524-527 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T5 703-706 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T6 707-716 http://purl.obolibrary.org/obo/CLO_0001658 denotes activated
T7 778-779 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T8 889-892 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T9 1091-1094 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T10 1195-1201 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T11 1238-1241 http://purl.obolibrary.org/obo/CLO_0001079 denotes 148
T12 1368-1370 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T13 2101-2111 http://purl.obolibrary.org/obo/CLO_0001658 denotes activation
T14 2113-2116 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T15 2269-2276 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T16 2399-2403 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T17 2465-2476 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing was
T18 2490-2493 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T19 2495-2496 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T20 2524-2525 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T21 2631-2632 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T22 2661-2662 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T23 2710-2733 http://purl.obolibrary.org/obo/UBERON_0001558 denotes lower respiratory tract
T24 2905-2906 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T25 3056-3067 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing was
T26 3223-3230 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T27 3290-3301 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing was
T28 3315-3318 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T29 3398-3401 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T30 3468-3471 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T31 3795-3799 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T32 3854-3861 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T33 4017-4020 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T34 4103-4114 http://purl.obolibrary.org/obo/UBERON_0000473 denotes Testing was
T35 4159-4161 http://purl.obolibrary.org/obo/CLO_0001302 denotes 34
T36 4315-4322 http://purl.obolibrary.org/obo/UBERON_0000473 denotes Testing
T37 4448-4455 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T38 4530-4531 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T39 4631-4632 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T40 4780-4782 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T41 4784-4786 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T42 4792-4793 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T43 4858-4859 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T44 4887-4893 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T45 4899-4903 http://purl.obolibrary.org/obo/UBERON_0003101 denotes male
T46 4899-4903 http://www.ebi.ac.uk/efo/EFO_0000970 denotes male
T47 5015-5017 http://purl.obolibrary.org/obo/CLO_0001382 denotes 48
T48 5168-5179 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing was
T49 5369-5370 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T50 5479-5481 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T51 5529-5530 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T52 5649-5660 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing was
T53 5800-5806 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T54 5932-5939 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T55 6027-6029 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T56 6054-6056 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T57 6069-6073 http://purl.obolibrary.org/obo/UBERON_0003101 denotes Male
T58 6069-6073 http://www.ebi.ac.uk/efo/EFO_0000970 denotes Male
T59 6301-6307 http://purl.obolibrary.org/obo/CLO_0053733 denotes 1 (<1)
T60 6470-6473 http://purl.obolibrary.org/obo/CLO_0001079 denotes 148
T61 6547-6548 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T62 6635-6637 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T63 6843-6854 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing was
T64 7033-7034 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T65 7146-7148 http://purl.obolibrary.org/obo/CLO_0001000 denotes 35
T66 7550-7552 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T67 7676-7677 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T68 7712-7713 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T69 7772-7778 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T70 7805-7811 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T71 7864-7865 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T72 8157-8161 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T73 8256-8261 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T74 8416-8423 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T75 8544-8547 http://purl.obolibrary.org/obo/CLO_0001079 denotes 148
T76 8663-8665 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T77 8755-8756 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T78 8815-8821 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T79 8845-8851 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T80 8853-8855 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T81 9374-9381 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T82 9487-9488 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T83 9598-9601 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T84 9602-9605 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T85 9819-9825 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T86 9880-9886 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T87 9954-9955 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T88 10261-10264 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T89 10511-10517 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T90 10610-10613 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T91 10846-10853 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T92 11100-11123 http://purl.obolibrary.org/obo/UBERON_0001558 denotes lower respiratory tract
T93 11397-11400 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T94 11494-11503 http://purl.obolibrary.org/obo/BFO_0000030 denotes objective
T95 11532-11533 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T96 11796-11803 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T97 11863-11864 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T98 12182-12183 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T99 12277-12300 http://purl.obolibrary.org/obo/UBERON_0001558 denotes lower respiratory tract
T100 12695-12696 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T101 12755-12758 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T102 12938-12941 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T103 13035-13041 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T104 13145-13146 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T105 13168-13169 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 4899-4903 Chemical denotes male http://purl.obolibrary.org/obo/CHEBI_30780
T2 5966-5971 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 2769-2778 http://purl.obolibrary.org/obo/GO_0007585 denotes breathing
T2 3242-3263 http://purl.obolibrary.org/obo/GO_0001171 denotes reverse transcription
T3 3250-3263 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T2 0-76 Sentence denotes On February 7, 2020, this report was posted online as an MMWR Early Release.
T3 77-183 Sentence denotes In December 2019, a cluster of cases of pneumonia emerged in Wuhan City in central China’s Hubei Province.
T4 184-316 Sentence denotes Genetic sequencing of isolates obtained from patients with pneumonia identified a novel coronavirus (2019-nCoV) as the etiology (1).
T5 317-508 Sentence denotes As of February 4, 2020, approximately 20,000 confirmed cases had been identified in China and an additional 159 confirmed cases in 23 other countries, including 11 in the United States (2,3).
T6 509-540 Sentence denotes On January 17, CDC and the U.S.
T7 541-702 Sentence denotes Department of Homeland Security’s Customs and Border Protection began health screenings at U.S. airports to identify ill travelers returning from Wuhan City (4).
T8 703-864 Sentence denotes CDC activated its Emergency Operations Center on January 21 and formalized a process for inquiries regarding persons suspected of having 2019-nCoV infection (2).
T9 865-1080 Sentence denotes As of January 31, 2020, CDC had responded to clinical inquiries from public health officials and health care providers to assist in evaluating approximately 650 persons thought to be at risk for 2019-nCoV infection.
T10 1081-1419 Sentence denotes Guided by CDC criteria for the evaluation of persons under investigation (PUIs) (5), 210 symptomatic persons were tested for 2019-nCoV; among these persons, 148 (70%) had travel-related risk only, 42 (20%) had close contact with an ill laboratory-confirmed 2019-nCoV patient or PUI, and 18 (9%) had both travel- and contact-related risks.
T11 1420-1489 Sentence denotes Eleven of these persons had laboratory-confirmed 2019-nCoV infection.
T12 1490-1601 Sentence denotes Recognizing persons at risk for 2019-nCoV is critical to identifying cases and preventing further transmission.
T13 1602-1778 Sentence denotes Health care providers should remain vigilant and adhere to recommended infection prevention and control practices when evaluating patients for possible 2019-nCoV infection (6).
T14 1779-2055 Sentence denotes Providers should consult with their local and state health departments when assessing not only ill travelers from 2019-nCoV-affected countries but also ill persons who have been in close contact with patients with laboratory-confirmed 2019-nCoV infection in the United States.
T15 2056-2207 Sentence denotes As part of CDC’s Emergency Operations Center activation, CDC personnel assist state and local health departments with the evaluation of 2019-nCoV PUIs.
T16 2208-2449 Sentence denotes Public health laboratories were not yet conducting 2019-nCoV testing during the period covered by this report, while awaiting Food and Drug Administration emergency use authorization for the test. (The authorization occurred on February 4*).
T17 2450-2494 Sentence denotes Therefore, all testing was conducted at CDC.
T18 2495-2573 Sentence denotes A call center was staffed by a team of physicians and nurses 24 hours per day.
T19 2574-2814 Sentence denotes During January 17–31, criteria used to determine whether a person was considered to be a PUI included presence of fever and symptoms of lower respiratory tract illness (e.g., cough or difficulty breathing) in addition to epidemiologic risk.
T20 2815-2995 Sentence denotes Epidemiologic risk factors included history of travel from Wuhan City, close contact with a patient with laboratory-confirmed 2019-nCoV infection, or close contact with an ill PUI.
T21 2996-3172 Sentence denotes Given the evolving understanding of 2019-nCoV epidemiology, testing was recommended for some persons who did not strictly meet the PUI definition, based on clinical discretion.
T22 3173-3380 Sentence denotes For clinical inquiries that resulted in 2019-nCoV testing, real-time reverse transcription polymerase chain reaction testing was conducted at CDC using methods developed specifically to detect 2019-nCoV (7).
T23 3381-3601 Sentence denotes For this report, CDC reviewed inquiries regarding potential 2019-nCoV PUIs received by CDC through January 31, 2020, from state and local health departments, health care providers, and airport health screening personnel.
T24 3602-3808 Sentence denotes Information was compiled from call logs and PUI forms to assess source of inquiry, PUI demographic data (including age and sex), clinical information, epidemiologic risk factors, and 2019-nCoV test results.
T25 3809-3978 Sentence denotes To allow for delays in specimen shipping and testing, data for PUIs for whom an initial inquiry was received during January 2020 were collected through February 4, 2020.
T26 3979-4102 Sentence denotes During January 2020, approximately 30 CDC physicians and nurses responded to inquiries regarding approximately 650 persons.
T27 4103-4263 Sentence denotes Testing was recommended for 256 persons (Figure) across 34 jurisdictions (the jurisdictions included states, the District of Columbia, Puerto Rico, and the U.S.
T28 4264-4314 Sentence denotes Virgin Islands) and was completed for 210 persons.
T29 4315-4418 Sentence denotes Testing of PUIs was not always performed because alternative diagnoses were made, or symptoms resolved.
T30 4419-4598 Sentence denotes Among inquiries resulting in testing, six (3%) persons were identified through airport screening, 178 (85%) in a health care setting, and 26 (12%) through contact tracing (Table).
T31 4599-4857 Sentence denotes Among 178 persons identified in a health care setting, the type of setting was reported for 125 (70%), including 79 (63%) who were evaluated at an emergency department or hospital, 22 (18%) at a student clinic, and 24 (19%) in other outpatient care settings.
T32 4858-4969 Sentence denotes A total of 115 (55%) persons tested were male, and median age was 29 years (interquartile range = 21–49 years).
T33 4970-5097 Sentence denotes Seventeen (8%) were health care workers, and 48 of 129 persons with available information were reported to be college students.
T34 5098-5286 Sentence denotes FIGURE Number of persons for whom 2019 novel coronavirus (2019-nCoV) testing was recommended, by date of initial inquiry (N = 256) — United States, January 2020*,† <Fig_Large></Fig_Large>
T35 5287-5342 Sentence denotes * Confirmed cases were reported as of January 31, 2020.
T36 5343-5450 Sentence denotes † Public announcements of a confirmed 2019-nCoV case in the United States were made on the following dates:
T37 5451-5514 Sentence denotes Jan 21, Jan 24, Jan 26, Jan 27 (two cases), Jan 30, and Jan 31.
T38 5515-5722 Sentence denotes The figure is a bar chart indicating the number of persons (N = 256) in the United States for whom 2019 novel coronavirus (2019-nCoV) testing was recommended, by date of initial inquiry, during January 2020.
T39 5723-5895 Sentence denotes TABLE Clinical characteristics and epidemiologic risk factors among persons tested for 2019 novel coronavirus (2019-nCoV) infection (N = 210) — United States, January 2020
T40 5896-5948 Sentence denotes Characteristic Completed 2019-nCoV testing
No.* (%)
T41 5949-5961 Sentence denotes Demographics
T42 5962-6003 Sentence denotes Age group (yrs), median (IQR) 29 (21–49)
T43 6004-6014 Sentence denotes <5 10 (5)
T44 6015-6026 Sentence denotes 5–17 8 (4)
T45 6027-6042 Sentence denotes 18–49 138 (66)
T46 6043-6057 Sentence denotes 50–64 46 (22)
T47 6058-6068 Sentence denotes ≥65 4 (2)
T48 6069-6087 Sentence denotes Male sex 115 (55)
T49 6088-6105 Sentence denotes Clinical features
T50 6106-6123 Sentence denotes Signs or symptoms
T51 6124-6193 Sentence denotes Subjective fever or measured temperature ≥100.4°F (≥38.0°C) 143 (68)
T52 6194-6232 Sentence denotes Cough or shortness of breath 189 (90)
T53 6233-6248 Sentence denotes Clinical Course
T54 6249-6270 Sentence denotes Hospitalized 42 (20)
T55 6271-6293 Sentence denotes Admitted to ICU 4 (2)
T56 6294-6307 Sentence denotes Died† 1 (<1)
T57 6308-6340 Sentence denotes Setting where patient identified
T58 6341-6365 Sentence denotes Airport screening 6 (3)
T59 6366-6395 Sentence denotes Health care setting 178 (85)
T60 6396-6421 Sentence denotes Contact tracing§ 26 (12)
T61 6422-6449 Sentence denotes Epidemiologic risk category
T62 6450-6478 Sentence denotes Travel from China¶ 148 (70)
T63 6479-6584 Sentence denotes Close contact with an ill laboratory-confirmed 2019-nCoV patient or a PUI in the United States** 42 (20)
T64 6585-6641 Sentence denotes Travel from China and close contact identified†† 18 (9)
T65 6642-6662 Sentence denotes Other risk§§ 2 (<1)
T66 6663-6765 Sentence denotes Abbreviations: ICU = intensive care unit; IQR = interquartile range; PUI = person under investigation.
T67 6766-6823 Sentence denotes * Numbers might not sum to total because of missing data.
T68 6824-6929 Sentence denotes † For this person, testing was negative for 2019-nCoV, and an alternative cause of death was established.
T69 6930-7089 Sentence denotes § Additional persons who were being followed through contact tracing but initially sought treatment at a health care setting are not included in this category.
T70 7090-7228 Sentence denotes ¶ Includes 113 persons who traveled from Wuhan City and 35 who traveled from areas of China outside Wuhan within 14 days of symptom onset.
T71 7229-7366 Sentence denotes ** Includes 33 persons who were close contacts of an ill laboratory-confirmed 2019-nCoV patient and nine who were close contacts of PUIs.
T72 7367-7421 Sentence denotes All contacts occurred within 14 days of symptom onset.
T73 7422-7682 Sentence denotes †† Includes four persons who traveled from Wuhan City and were close contacts of an ill laboratory-confirmed 2019-nCoV patient, 11 who traveled from Wuhan City and were close contacts of PUIs, and three who traveled from China and were close contacts of a PUI.
T74 7683-7779 Sentence denotes §§ Had possible contact with a laboratory-confirmed 2019-nCoV patient and were therefore tested.
T75 7780-7829 Sentence denotes All 210 persons who were tested were symptomatic:
T76 7830-7952 Sentence denotes 143 (68%) had subjective fever or a measured temperature ≥100.4°F (≥38°C), and 189 (90%) had cough or shortness of breath.
T77 7953-8124 Sentence denotes Upper respiratory tract symptoms (i.e., sore throat, rhinorrhea, or congestion) were common and were present in nine persons who did not have cough or shortness of breath.
T78 8125-8262 Sentence denotes Thirty persons were reported to test positive for another respiratory viral pathogen, including influenza or respiratory syncytial virus.
T79 8263-8361 Sentence denotes Forty-two (20%) patients were hospitalized, and four (2%) were admitted to an intensive care unit.
T80 8362-8504 Sentence denotes One patient was deceased at the time of notification; testing for this person was negative, and an alternative cause of death was established.
T81 8505-8822 Sentence denotes Travel-related risk was identified for 148 (70%) persons, 42 (20%) had close contact with ill patients with laboratory-confirmed 2019-nCoV infection or PUIs, 18 (9%) had both travel- and contact-related risks, and two (<1%) had possible contact with a laboratory-confirmed 2019-nCoV patient and were therefore tested.
T82 8823-8900 Sentence denotes Among the 210 persons tested, 11 (5%) were found to have 2019-nCoV infection.
T83 8901-9081 Sentence denotes Nine of these persons had traveled to Wuhan City; two persons had not traveled but had been in close contact with patients with laboratory-confirmed 2019-nCoV in the United States.
T84 9082-9148 Sentence denotes All were symptomatic with fever (subjective or measured) or cough.
T85 9150-9160 Sentence denotes Discussion
T86 9161-9289 Sentence denotes Quickly identifying persons at risk for 2019-nCoV is critical to slowing the potential spread of 2019-nCoV in the United States.
T87 9290-9428 Sentence denotes This report describes CDC’s current approach to facilitating recommended diagnostic testing of persons who might have 2019-nCoV infection.
T88 9429-9769 Sentence denotes In response to the emergence of 2019-nCoV in China during a time of rapidly evolving understanding of the epidemiology and clinical presentation of 2019-nCoV infection, CDC has provided consultation regarding persons suspected of being at risk for 2019-nCoV to public health officials and health care providers throughout the United States.
T89 9770-9867 Sentence denotes Epidemiologic risk factors among the 210 persons tested for 2019-nCoV were not limited to travel:
T90 9868-10003 Sentence denotes 20% of PUIs tested had not recently traveled to China but reported close contact with a person being evaluated for 2019-nCoV infection.
T91 10004-10260 Sentence denotes Because person-to-person transmission is expected to continue, and as further travel restrictions are implemented, it is likely that the proportion of PUIs with such contact risk in the United States will increase among all persons evaluated for 2019-nCoV.
T92 10261-10418 Sentence denotes CDC mobilized early in the response and state and local health departments similarly increased capacity to provide clinical consultation regarding 2019-nCoV.
T93 10419-10588 Sentence denotes The collection of clinical and epidemiologic data that described characteristics of persons tested for 2019-nCoV helped to inform changes to criteria for PUI evaluation.
T94 10589-10807 Sentence denotes On January 31, 2020, CDC published updated PUI guidance (8) in response to the evolving global epidemiology of 2019-nCoV, including the rapid geographic expansion and documentation of person-to-person transmission (9).
T95 10808-11132 Sentence denotes Updated guidance emphasizes 2019-nCoV testing for symptomatic persons in close contact with patients with laboratory-confirmed 2019-nCoV infection, persons returning from Hubei province in addition to Wuhan City, and persons from mainland China requiring hospitalization because of fever and lower respiratory tract illness.
T96 11133-11273 Sentence denotes Additional refinements to this approach likely will be needed in the future as understanding of 2019-nCoV epidemiology continues to improve.
T97 11274-11344 Sentence denotes The findings in this report are subject to at least three limitations.
T98 11345-11465 Sentence denotes First, the number of clinical inquiries received by CDC does not represent all inquiries received by health departments.
T99 11466-11634 Sentence denotes Second, because the primary objective of this effort was to guide a timely public health response, some clinical and epidemiologic risk factor data might be incomplete.
T100 11635-11862 Sentence denotes Finally, given the limited available epidemiologic information early in the outbreak, to provide some latitude for clinical decision-making regarding diagnostic testing, the PUI definition was not strictly applied in all cases.
T101 11863-12050 Sentence denotes A coordinated national effort to diagnose 2019-nCoV among persons at high risk for infection is important to facilitate appropriate management and limit transmission in the United States.
T102 12051-12154 Sentence denotes CDC’s website provides guidance for health care professionals on evaluating persons for 2019-nCoV (10).
T103 12155-12474 Sentence denotes Clinicians should maintain a high index of suspicion for possible 2019-nCoV illness not only among persons with fever and lower respiratory tract illness who report travel from China in the past 14 days but also symptomatic persons who have had close contact with patients with laboratory-confirmed 2019-nCoV infection.
T104 12475-12638 Sentence denotes Clinicians should consult their local and state health departments when they suspect possible 2019-nCoV illness to facilitate diagnosis and aid prevention efforts.
T105 12639-12646 Sentence denotes Summary
T106 12648-12687 Sentence denotes What is already known about this topic?
T107 12688-12885 Sentence denotes During a 2020 outbreak of novel coronavirus (2019-nCoV) infection, CDC provided consultation to public health officials and health care providers evaluating persons at risk for 2019-nCoV infection.
T108 12887-12916 Sentence denotes What is added by this report?
T109 12917-13232 Sentence denotes During January 2020, CDC responded to clinical inquiries regarding approximately 650 persons in the United States and tested 210 for 2019-nCoV, one fifth of whom reported no recent travel-related risk but had close contact with a 2019-nCoV patient or a person under investigation for 2019-nCoV in the United States.
T110 13234-13287 Sentence denotes What are the implications for public health practice?
T111 13288-13492 Sentence denotes Health care providers should remain vigilant regarding possible 2019-nCoV exposure not only among returning travelers, but also among persons in close contact with 2019-nCoV patients in the United States.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 117-126 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T2 243-252 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T3 2688-2693 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T4 2749-2754 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T5 2758-2778 Phenotype denotes difficulty breathing http://purl.obolibrary.org/obo/HP_0002098
T6 6135-6140 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T7 6194-6199 Phenotype denotes Cough http://purl.obolibrary.org/obo/HP_0012735
T8 6203-6222 Phenotype denotes shortness of breath http://purl.obolibrary.org/obo/HP_0002098
T9 7855-7860 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T10 7923-7928 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T11 7932-7951 Phenotype denotes shortness of breath http://purl.obolibrary.org/obo/HP_0002098
T12 7993-8004 Phenotype denotes sore throat http://purl.obolibrary.org/obo/HP_0033050
T13 8006-8016 Phenotype denotes rhinorrhea http://purl.obolibrary.org/obo/HP_0031417
T14 8095-8100 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T15 8104-8123 Phenotype denotes shortness of breath http://purl.obolibrary.org/obo/HP_0002098
T16 9108-9113 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T17 9142-9147 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T18 11090-11095 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T19 12267-12272 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945

2_test

Id Subject Object Predicate Lexical cue
32053579-31991079-70157398 10804-10805 31991079 denotes 9