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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
258 10776-10785 Species denotes 2019-nCoV Tax:2697049
2 0-7 Species denotes Persons Tax:9606
3 22-44 Species denotes 2019 Novel Coronavirus Tax:2697049
30 305-313 Species denotes patients Tax:9606
31 342-359 Species denotes novel coronavirus Tax:2697049
32 361-370 Species denotes 2019-nCoV Tax:2697049
33 888-895 Species denotes persons Tax:9606
34 1102-1109 Species denotes persons Tax:9606
35 1202-1209 Species denotes persons Tax:9606
36 1258-1265 Species denotes persons Tax:9606
37 1282-1291 Species denotes 2019-nCoV Tax:2697049
38 1305-1312 Species denotes persons Tax:9606
39 1414-1423 Species denotes 2019-nCoV Tax:2697049
40 1424-1431 Species denotes patient Tax:9606
41 1512-1519 Species denotes persons Tax:9606
42 1578-1585 Species denotes persons Tax:9606
43 1598-1607 Species denotes 2019-nCoV Tax:2697049
44 1808-1816 Species denotes patients Tax:9606
45 1969-1978 Species denotes 2019-nCoV Tax:2697049
46 2011-2018 Species denotes persons Tax:9606
47 2055-2063 Species denotes patients Tax:9606
48 193-202 Disease denotes pneumonia MESH:D011014
49 319-328 Disease denotes pneumonia MESH:D011014
50 916-935 Disease denotes 2019-nCoV infection MESH:C000657245
51 1136-1155 Disease denotes 2019-nCoV infection MESH:C000657245
52 1545-1564 Disease denotes 2019-nCoV infection MESH:C000657245
53 1749-1758 Disease denotes infection MESH:D007239
54 1830-1849 Disease denotes 2019-nCoV infection MESH:C000657245
55 2090-2109 Disease denotes 2019-nCoV infection MESH:C000657245
67 2268-2277 Species denotes 2019-nCoV Tax:2697049
68 2335-2344 Species denotes 2019-nCoV Tax:2697049
69 2983-2990 Species denotes patient Tax:9606
70 3108-3117 Species denotes 2019-nCoV Tax:2697049
71 3165-3172 Species denotes persons Tax:9606
72 3289-3298 Species denotes 2019-nCoV Tax:2697049
73 3442-3451 Species denotes 2019-nCoV Tax:2697049
74 2764-2769 Disease denotes fever MESH:D005334
75 2792-2817 Disease denotes respiratory tract illness MESH:D012140
76 2825-2830 Disease denotes cough MESH:D003371
77 3017-3036 Disease denotes 2019-nCoV infection MESH:C000657245
80 3517-3526 Species denotes 2019-nCoV Tax:2697049
81 3861-3870 Species denotes 2019-nCoV Tax:2697049
90 4170-4177 Species denotes persons Tax:9606
91 4211-4218 Species denotes persons Tax:9606
92 4382-4389 Species denotes persons Tax:9606
93 4542-4549 Species denotes persons Tax:9606
94 4685-4692 Species denotes persons Tax:9606
95 4908-4918 Species denotes outpatient Tax:9606
96 4955-4962 Species denotes persons Tax:9606
97 5101-5108 Species denotes persons Tax:9606
101 5192-5199 Species denotes persons Tax:9606
102 5209-5231 Species denotes 2019 novel coronavirus Tax:2697049
103 5233-5242 Species denotes 2019-nCoV Tax:2697049
105 5457-5466 Species denotes 2019-nCoV Tax:2697049
109 5642-5649 Species denotes persons Tax:9606
110 5690-5712 Species denotes 2019 novel coronavirus Tax:2697049
111 5714-5723 Species denotes 2019-nCoV Tax:2697049
119 5998-6007 Species denotes 2019-nCoV Tax:2697049
120 6398-6405 Species denotes patient Tax:9606
121 6602-6611 Species denotes 2019-nCoV Tax:2697049
122 6612-6619 Species denotes patient Tax:9606
123 6211-6216 Disease denotes fever MESH:D005334
124 6270-6275 Disease denotes Cough MESH:D003371
125 6279-6298 Disease denotes shortness of breath MESH:D004417
128 5868-5875 Species denotes persons Tax:9606
129 5887-5931 Disease denotes 2019 novel coronavirus (2019-nCoV) infection MESH:C000657245
132 6944-6953 Species denotes 2019-nCoV Tax:2697049
133 6983-6988 Disease denotes death MESH:D003643
135 7019-7026 Species denotes persons Tax:9606
137 7181-7188 Species denotes persons Tax:9606
141 7320-7327 Species denotes persons Tax:9606
142 7383-7392 Species denotes 2019-nCoV Tax:2697049
143 7393-7400 Species denotes patient Tax:9606
147 7515-7522 Species denotes persons Tax:9606
148 7607-7616 Species denotes 2019-nCoV Tax:2697049
149 7617-7624 Species denotes patient Tax:9606
152 7811-7820 Species denotes 2019-nCoV Tax:2697049
153 7821-7828 Species denotes patient Tax:9606
175 7864-7871 Species denotes persons Tax:9606
176 8146-8153 Species denotes persons Tax:9606
177 8208-8215 Species denotes persons Tax:9606
178 8310-8337 Species denotes respiratory syncytial virus Tax:12814
179 8355-8363 Species denotes patients Tax:9606
180 8442-8449 Species denotes patient Tax:9606
181 8630-8637 Species denotes persons Tax:9606
182 8675-8683 Species denotes patients Tax:9606
183 8854-8863 Species denotes 2019-nCoV Tax:2697049
184 8864-8871 Species denotes patient Tax:9606
185 8035-8046 Species denotes respiratory Tax:12814
186 8259-8270 Species denotes respiratory Tax:12814
187 7931-7936 Disease denotes fever MESH:D005334
188 7999-8004 Disease denotes cough MESH:D003371
189 8008-8027 Disease denotes shortness of breath MESH:D004417
190 8069-8080 Disease denotes sore throat MESH:D010608
191 8082-8092 Disease denotes rhinorrhea MESH:D012818
192 8171-8176 Disease denotes cough MESH:D003371
193 8180-8199 Disease denotes shortness of breath MESH:D004417
194 8558-8563 Disease denotes death MESH:D003643
195 8710-8729 Disease denotes 2019-nCoV infection MESH:C000657245
204 8913-8920 Species denotes persons Tax:9606
205 8991-8998 Species denotes persons Tax:9606
206 9031-9038 Species denotes persons Tax:9606
207 9091-9099 Species denotes patients Tax:9606
208 9126-9135 Species denotes 2019-nCoV Tax:2697049
209 8956-8975 Disease denotes 2019-nCoV infection MESH:C000657245
210 9184-9189 Disease denotes fever MESH:D005334
211 9218-9223 Disease denotes cough MESH:D003371
221 9257-9264 Species denotes persons Tax:9606
222 9277-9286 Species denotes 2019-nCoV Tax:2697049
223 9334-9343 Species denotes 2019-nCoV Tax:2697049
224 9461-9468 Species denotes persons Tax:9606
225 9537-9546 Species denotes 2019-nCoV Tax:2697049
226 9714-9721 Species denotes persons Tax:9606
227 9753-9762 Species denotes 2019-nCoV Tax:2697049
228 9484-9503 Disease denotes 2019-nCoV infection MESH:C000657245
229 9653-9672 Disease denotes 2019-nCoV infection MESH:C000657245
235 9887-9894 Species denotes persons Tax:9606
236 9906-9915 Species denotes 2019-nCoV Tax:2697049
237 10304-10311 Species denotes persons Tax:9606
238 10326-10335 Species denotes 2019-nCoV Tax:2697049
239 10059-10078 Disease denotes 2019-nCoV infection MESH:C000657245
244 10484-10493 Species denotes 2019-nCoV Tax:2697049
245 10499-10509 Species denotes collection Tax:1768868
246 10579-10586 Species denotes persons Tax:9606
247 10598-10607 Species denotes 2019-nCoV Tax:2697049
259 10912-10921 Species denotes 2019-nCoV Tax:2697049
260 10946-10953 Species denotes persons Tax:9606
261 10976-10984 Species denotes patients Tax:9606
262 11032-11039 Species denotes persons Tax:9606
263 11101-11108 Species denotes persons Tax:9606
264 11305-11314 Species denotes 2019-nCoV Tax:2697049
265 11011-11030 Disease denotes 2019-nCoV infection MESH:C000657245
266 11166-11171 Disease denotes fever MESH:D005334
267 11182-11207 Disease denotes respiratory tract illness MESH:D012140
281 11981-11990 Species denotes 2019-nCoV Tax:2697049
282 11997-12004 Species denotes persons Tax:9606
283 12203-12210 Species denotes persons Tax:9606
284 12215-12224 Species denotes 2019-nCoV Tax:2697049
285 12330-12337 Species denotes persons Tax:9606
286 12455-12462 Species denotes persons Tax:9606
287 12495-12503 Species denotes patients Tax:9606
288 12022-12031 Disease denotes infection MESH:D007239
289 12297-12314 Disease denotes 2019-nCoV illness MESH:C000657245
290 12343-12348 Disease denotes fever MESH:D005334
291 12359-12384 Disease denotes respiratory tract illness MESH:D012140
292 12530-12549 Disease denotes 2019-nCoV infection MESH:C000657245
293 12645-12662 Disease denotes 2019-nCoV illness MESH:C000657245
297 12921-12928 Species denotes persons Tax:9606
298 12790-12829 Disease denotes novel coronavirus (2019-nCoV) infection MESH:C000657245
299 12941-12960 Disease denotes 2019-nCoV infection MESH:C000657245
305 13078-13085 Species denotes persons Tax:9606
306 13126-13135 Species denotes 2019-nCoV Tax:2697049
307 13223-13232 Species denotes 2019-nCoV Tax:2697049
308 13233-13240 Species denotes patient Tax:9606
309 13277-13286 Species denotes 2019-nCoV Tax:2697049
314 13428-13437 Species denotes 2019-nCoV Tax:2697049
315 13498-13505 Species denotes persons Tax:9606
316 13528-13537 Species denotes 2019-nCoV Tax:2697049
317 13538-13546 Species denotes patients Tax:9606
319 14039-14050 Species denotes coronavirus Tax:11118

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 2786-2809 Body_part denotes lower respiratory tract http://purl.org/sig/ont/fma/fma45662
T2 8029-8052 Body_part denotes Upper respiratory tract http://purl.org/sig/ont/fma/fma45661
T3 8074-8080 Body_part denotes throat http://purl.org/sig/ont/fma/fma228738
T4 11176-11199 Body_part denotes lower respiratory tract http://purl.org/sig/ont/fma/fma45662
T5 12353-12376 Body_part denotes lower respiratory tract http://purl.org/sig/ont/fma/fma45662

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 2786-2809 Body_part denotes lower respiratory tract http://purl.obolibrary.org/obo/UBERON_0001558
T2 2792-2809 Body_part denotes respiratory tract http://purl.obolibrary.org/obo/UBERON_0000065
T3 8029-8052 Body_part denotes Upper respiratory tract http://purl.obolibrary.org/obo/UBERON_0001557
T4 8035-8052 Body_part denotes respiratory tract http://purl.obolibrary.org/obo/UBERON_0000065
T5 8074-8080 Body_part denotes throat http://purl.obolibrary.org/obo/UBERON_0000341
T6 11176-11199 Body_part denotes lower respiratory tract http://purl.obolibrary.org/obo/UBERON_0001558
T7 11182-11199 Body_part denotes respiratory tract http://purl.obolibrary.org/obo/UBERON_0000065
T8 12353-12376 Body_part denotes lower respiratory tract http://purl.obolibrary.org/obo/UBERON_0001558
T9 12359-12376 Body_part denotes respiratory tract http://purl.obolibrary.org/obo/UBERON_0000065

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 193-202 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T2 319-328 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T3 916-935 Disease denotes 2019-nCoV infection http://purl.obolibrary.org/obo/MONDO_0100096
T4 926-935 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T5 1136-1155 Disease denotes 2019-nCoV infection http://purl.obolibrary.org/obo/MONDO_0100096
T6 1146-1155 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T7 1545-1564 Disease denotes 2019-nCoV infection http://purl.obolibrary.org/obo/MONDO_0100096
T8 1555-1564 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T9 1749-1758 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T10 1830-1849 Disease denotes 2019-nCoV infection http://purl.obolibrary.org/obo/MONDO_0100096
T11 1840-1849 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T12 2090-2109 Disease denotes 2019-nCoV infection http://purl.obolibrary.org/obo/MONDO_0100096
T13 2100-2109 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T14 3017-3036 Disease denotes 2019-nCoV infection http://purl.obolibrary.org/obo/MONDO_0100096
T15 3027-3036 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T16 5910-5931 Disease denotes (2019-nCoV) infection http://purl.obolibrary.org/obo/MONDO_0100096
T17 5922-5931 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T18 8069-8080 Disease denotes sore throat http://purl.obolibrary.org/obo/MONDO_0002258
T19 8297-8306 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T20 8710-8729 Disease denotes 2019-nCoV infection http://purl.obolibrary.org/obo/MONDO_0100096
T21 8720-8729 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T22 8956-8975 Disease denotes 2019-nCoV infection http://purl.obolibrary.org/obo/MONDO_0100096
T23 8966-8975 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T24 9484-9503 Disease denotes 2019-nCoV infection http://purl.obolibrary.org/obo/MONDO_0100096
T25 9494-9503 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T26 9653-9672 Disease denotes 2019-nCoV infection http://purl.obolibrary.org/obo/MONDO_0100096
T27 9663-9672 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T28 10059-10078 Disease denotes 2019-nCoV infection http://purl.obolibrary.org/obo/MONDO_0100096
T29 10069-10078 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T30 11011-11030 Disease denotes 2019-nCoV infection http://purl.obolibrary.org/obo/MONDO_0100096
T31 11021-11030 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T32 12022-12031 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T33 12530-12549 Disease denotes 2019-nCoV infection http://purl.obolibrary.org/obo/MONDO_0100096
T34 12540-12549 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T35 12808-12829 Disease denotes (2019-nCoV) infection http://purl.obolibrary.org/obo/MONDO_0100096
T36 12820-12829 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T37 12941-12960 Disease denotes 2019-nCoV infection http://purl.obolibrary.org/obo/MONDO_0100096
T38 12951-12960 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 171-172 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T2 340-341 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T3 554-556 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T4 600-603 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T5 779-782 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T6 783-792 http://purl.obolibrary.org/obo/CLO_0001658 denotes activated
T7 854-855 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T8 965-968 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T9 1167-1170 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T10 1271-1277 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T11 1314-1317 http://purl.obolibrary.org/obo/CLO_0001079 denotes 148
T12 1444-1446 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T13 2177-2187 http://purl.obolibrary.org/obo/CLO_0001658 denotes activation
T14 2189-2192 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T15 2345-2352 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T16 2475-2479 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T17 2541-2552 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing was
T18 2566-2569 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T19 2571-2572 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T20 2600-2601 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T21 2707-2708 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T22 2737-2738 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T23 2786-2809 http://purl.obolibrary.org/obo/UBERON_0001558 denotes lower respiratory tract
T24 2981-2982 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T25 3132-3143 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing was
T26 3299-3306 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T27 3366-3377 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing was
T28 3391-3394 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T29 3474-3477 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T30 3544-3547 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T31 3871-3875 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T32 3930-3937 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T33 4093-4096 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T34 4179-4190 http://purl.obolibrary.org/obo/UBERON_0000473 denotes Testing was
T35 4235-4237 http://purl.obolibrary.org/obo/CLO_0001302 denotes 34
T36 4391-4398 http://purl.obolibrary.org/obo/UBERON_0000473 denotes Testing
T37 4524-4531 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T38 4606-4607 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T39 4707-4708 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T40 4856-4858 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T41 4860-4862 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T42 4868-4869 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T43 4934-4935 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T44 4963-4969 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T45 4975-4979 http://purl.obolibrary.org/obo/UBERON_0003101 denotes male
T46 4975-4979 http://www.ebi.ac.uk/efo/EFO_0000970 denotes male
T47 5091-5093 http://purl.obolibrary.org/obo/CLO_0001382 denotes 48
T48 5244-5255 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing was
T49 5445-5446 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T50 5555-5557 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T51 5605-5606 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T52 5725-5736 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing was
T53 5876-5882 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T54 6008-6015 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T55 6103-6105 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T56 6130-6132 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T57 6145-6149 http://purl.obolibrary.org/obo/UBERON_0003101 denotes Male
T58 6145-6149 http://www.ebi.ac.uk/efo/EFO_0000970 denotes Male
T59 6377-6383 http://purl.obolibrary.org/obo/CLO_0053733 denotes 1 (<1)
T60 6546-6549 http://purl.obolibrary.org/obo/CLO_0001079 denotes 148
T61 6623-6624 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T62 6711-6713 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T63 6919-6930 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing was
T64 7109-7110 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T65 7222-7224 http://purl.obolibrary.org/obo/CLO_0001000 denotes 35
T66 7626-7628 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T67 7752-7753 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T68 7788-7789 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T69 7848-7854 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T70 7881-7887 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T71 7940-7941 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T72 8233-8237 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T73 8332-8337 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T74 8492-8499 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T75 8620-8623 http://purl.obolibrary.org/obo/CLO_0001079 denotes 148
T76 8739-8741 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T77 8831-8832 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T78 8891-8897 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T79 8921-8927 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T80 8929-8931 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T81 9450-9457 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T82 9563-9564 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T83 9674-9677 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T84 9678-9681 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T85 9895-9901 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T86 9956-9962 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T87 10030-10031 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T88 10337-10340 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T89 10587-10593 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T90 10686-10689 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T91 10922-10929 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T92 11176-11199 http://purl.obolibrary.org/obo/UBERON_0001558 denotes lower respiratory tract
T93 11473-11476 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T94 11570-11579 http://purl.obolibrary.org/obo/BFO_0000030 denotes objective
T95 11608-11609 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T96 11872-11879 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T97 11939-11940 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T98 12258-12259 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T99 12353-12376 http://purl.obolibrary.org/obo/UBERON_0001558 denotes lower respiratory tract
T100 12771-12772 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T101 12831-12834 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T102 13014-13017 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T103 13111-13117 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T104 13221-13222 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T105 13244-13245 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T106 13716-13719 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 4975-4979 Chemical denotes male http://purl.obolibrary.org/obo/CHEBI_30780
T2 6042-6047 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 2845-2854 http://purl.obolibrary.org/obo/GO_0007585 denotes breathing
T2 3318-3339 http://purl.obolibrary.org/obo/GO_0001171 denotes reverse transcription
T3 3326-3339 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T1 0-74 Sentence denotes Persons Evaluated for 2019 Novel Coronavirus — United States, January 2020
T2 76-152 Sentence denotes On February 7, 2020, this report was posted online as an MMWR Early Release.
T3 153-259 Sentence denotes In December 2019, a cluster of cases of pneumonia emerged in Wuhan City in central China’s Hubei Province.
T4 260-392 Sentence denotes Genetic sequencing of isolates obtained from patients with pneumonia identified a novel coronavirus (2019-nCoV) as the etiology (1).
T5 393-584 Sentence denotes As of February 4, 2020, approximately 20,000 confirmed cases had been identified in China and an additional 159 confirmed cases in 23 other countries, including 11 in the United States (2,3).
T6 585-616 Sentence denotes On January 17, CDC and the U.S.
T7 617-778 Sentence denotes Department of Homeland Security’s Customs and Border Protection began health screenings at U.S. airports to identify ill travelers returning from Wuhan City (4).
T8 779-940 Sentence denotes CDC activated its Emergency Operations Center on January 21 and formalized a process for inquiries regarding persons suspected of having 2019-nCoV infection (2).
T9 941-1156 Sentence denotes As of January 31, 2020, CDC had responded to clinical inquiries from public health officials and health care providers to assist in evaluating approximately 650 persons thought to be at risk for 2019-nCoV infection.
T10 1157-1495 Sentence denotes Guided by CDC criteria for the evaluation of persons under investigation (PUIs) (5), 210 symptomatic persons were tested for 2019-nCoV; among these persons, 148 (70%) had travel-related risk only, 42 (20%) had close contact with an ill laboratory-confirmed 2019-nCoV patient or PUI, and 18 (9%) had both travel- and contact-related risks.
T11 1496-1565 Sentence denotes Eleven of these persons had laboratory-confirmed 2019-nCoV infection.
T12 1566-1677 Sentence denotes Recognizing persons at risk for 2019-nCoV is critical to identifying cases and preventing further transmission.
T13 1678-1854 Sentence denotes Health care providers should remain vigilant and adhere to recommended infection prevention and control practices when evaluating patients for possible 2019-nCoV infection (6).
T14 1855-2131 Sentence denotes Providers should consult with their local and state health departments when assessing not only ill travelers from 2019-nCoV-affected countries but also ill persons who have been in close contact with patients with laboratory-confirmed 2019-nCoV infection in the United States.
T15 2132-2283 Sentence denotes As part of CDC’s Emergency Operations Center activation, CDC personnel assist state and local health departments with the evaluation of 2019-nCoV PUIs.
T16 2284-2525 Sentence denotes Public health laboratories were not yet conducting 2019-nCoV testing during the period covered by this report, while awaiting Food and Drug Administration emergency use authorization for the test. (The authorization occurred on February 4*).
T17 2526-2570 Sentence denotes Therefore, all testing was conducted at CDC.
T18 2571-2649 Sentence denotes A call center was staffed by a team of physicians and nurses 24 hours per day.
T19 2650-2890 Sentence denotes During January 17–31, criteria used to determine whether a person was considered to be a PUI included presence of fever and symptoms of lower respiratory tract illness (e.g., cough or difficulty breathing) in addition to epidemiologic risk.
T20 2891-3071 Sentence denotes Epidemiologic risk factors included history of travel from Wuhan City, close contact with a patient with laboratory-confirmed 2019-nCoV infection, or close contact with an ill PUI.
T21 3072-3248 Sentence denotes Given the evolving understanding of 2019-nCoV epidemiology, testing was recommended for some persons who did not strictly meet the PUI definition, based on clinical discretion.
T22 3249-3456 Sentence denotes For clinical inquiries that resulted in 2019-nCoV testing, real-time reverse transcription polymerase chain reaction testing was conducted at CDC using methods developed specifically to detect 2019-nCoV (7).
T23 3457-3677 Sentence denotes For this report, CDC reviewed inquiries regarding potential 2019-nCoV PUIs received by CDC through January 31, 2020, from state and local health departments, health care providers, and airport health screening personnel.
T24 3678-3884 Sentence denotes Information was compiled from call logs and PUI forms to assess source of inquiry, PUI demographic data (including age and sex), clinical information, epidemiologic risk factors, and 2019-nCoV test results.
T25 3885-4054 Sentence denotes To allow for delays in specimen shipping and testing, data for PUIs for whom an initial inquiry was received during January 2020 were collected through February 4, 2020.
T26 4055-4178 Sentence denotes During January 2020, approximately 30 CDC physicians and nurses responded to inquiries regarding approximately 650 persons.
T27 4179-4339 Sentence denotes Testing was recommended for 256 persons (Figure) across 34 jurisdictions (the jurisdictions included states, the District of Columbia, Puerto Rico, and the U.S.
T28 4340-4390 Sentence denotes Virgin Islands) and was completed for 210 persons.
T29 4391-4494 Sentence denotes Testing of PUIs was not always performed because alternative diagnoses were made, or symptoms resolved.
T30 4495-4674 Sentence denotes Among inquiries resulting in testing, six (3%) persons were identified through airport screening, 178 (85%) in a health care setting, and 26 (12%) through contact tracing (Table).
T31 4675-4933 Sentence denotes Among 178 persons identified in a health care setting, the type of setting was reported for 125 (70%), including 79 (63%) who were evaluated at an emergency department or hospital, 22 (18%) at a student clinic, and 24 (19%) in other outpatient care settings.
T32 4934-5045 Sentence denotes A total of 115 (55%) persons tested were male, and median age was 29 years (interquartile range = 21–49 years).
T33 5046-5173 Sentence denotes Seventeen (8%) were health care workers, and 48 of 129 persons with available information were reported to be college students.
T34 5174-5362 Sentence denotes FIGURE Number of persons for whom 2019 novel coronavirus (2019-nCoV) testing was recommended, by date of initial inquiry (N = 256) — United States, January 2020*,† <Fig_Large></Fig_Large>
T35 5363-5418 Sentence denotes * Confirmed cases were reported as of January 31, 2020.
T36 5419-5526 Sentence denotes † Public announcements of a confirmed 2019-nCoV case in the United States were made on the following dates:
T37 5527-5590 Sentence denotes Jan 21, Jan 24, Jan 26, Jan 27 (two cases), Jan 30, and Jan 31.
T38 5591-5798 Sentence denotes The figure is a bar chart indicating the number of persons (N = 256) in the United States for whom 2019 novel coronavirus (2019-nCoV) testing was recommended, by date of initial inquiry, during January 2020.
T39 5799-5971 Sentence denotes TABLE Clinical characteristics and epidemiologic risk factors among persons tested for 2019 novel coronavirus (2019-nCoV) infection (N = 210) — United States, January 2020
T40 5972-6024 Sentence denotes Characteristic Completed 2019-nCoV testing
No.* (%)
T41 6025-6037 Sentence denotes Demographics
T42 6038-6079 Sentence denotes Age group (yrs), median (IQR) 29 (21–49)
T43 6080-6090 Sentence denotes <5 10 (5)
T44 6091-6102 Sentence denotes 5–17 8 (4)
T45 6103-6118 Sentence denotes 18–49 138 (66)
T46 6119-6133 Sentence denotes 50–64 46 (22)
T47 6134-6144 Sentence denotes ≥65 4 (2)
T48 6145-6163 Sentence denotes Male sex 115 (55)
T49 6164-6181 Sentence denotes Clinical features
T50 6182-6199 Sentence denotes Signs or symptoms
T51 6200-6269 Sentence denotes Subjective fever or measured temperature ≥100.4°F (≥38.0°C) 143 (68)
T52 6270-6308 Sentence denotes Cough or shortness of breath 189 (90)
T53 6309-6324 Sentence denotes Clinical Course
T54 6325-6346 Sentence denotes Hospitalized 42 (20)
T55 6347-6369 Sentence denotes Admitted to ICU 4 (2)
T56 6370-6383 Sentence denotes Died† 1 (<1)
T57 6384-6416 Sentence denotes Setting where patient identified
T58 6417-6441 Sentence denotes Airport screening 6 (3)
T59 6442-6471 Sentence denotes Health care setting 178 (85)
T60 6472-6497 Sentence denotes Contact tracing§ 26 (12)
T61 6498-6525 Sentence denotes Epidemiologic risk category
T62 6526-6554 Sentence denotes Travel from China¶ 148 (70)
T63 6555-6660 Sentence denotes Close contact with an ill laboratory-confirmed 2019-nCoV patient or a PUI in the United States** 42 (20)
T64 6661-6717 Sentence denotes Travel from China and close contact identified†† 18 (9)
T65 6718-6738 Sentence denotes Other risk§§ 2 (<1)
T66 6739-6841 Sentence denotes Abbreviations: ICU = intensive care unit; IQR = interquartile range; PUI = person under investigation.
T67 6842-6899 Sentence denotes * Numbers might not sum to total because of missing data.
T68 6900-7005 Sentence denotes † For this person, testing was negative for 2019-nCoV, and an alternative cause of death was established.
T69 7006-7165 Sentence denotes § Additional persons who were being followed through contact tracing but initially sought treatment at a health care setting are not included in this category.
T70 7166-7304 Sentence denotes ¶ Includes 113 persons who traveled from Wuhan City and 35 who traveled from areas of China outside Wuhan within 14 days of symptom onset.
T71 7305-7442 Sentence denotes ** Includes 33 persons who were close contacts of an ill laboratory-confirmed 2019-nCoV patient and nine who were close contacts of PUIs.
T72 7443-7497 Sentence denotes All contacts occurred within 14 days of symptom onset.
T73 7498-7758 Sentence denotes †† Includes four persons who traveled from Wuhan City and were close contacts of an ill laboratory-confirmed 2019-nCoV patient, 11 who traveled from Wuhan City and were close contacts of PUIs, and three who traveled from China and were close contacts of a PUI.
T74 7759-7855 Sentence denotes §§ Had possible contact with a laboratory-confirmed 2019-nCoV patient and were therefore tested.
T75 7856-7905 Sentence denotes All 210 persons who were tested were symptomatic:
T76 7906-8028 Sentence denotes 143 (68%) had subjective fever or a measured temperature ≥100.4°F (≥38°C), and 189 (90%) had cough or shortness of breath.
T77 8029-8200 Sentence denotes Upper respiratory tract symptoms (i.e., sore throat, rhinorrhea, or congestion) were common and were present in nine persons who did not have cough or shortness of breath.
T78 8201-8338 Sentence denotes Thirty persons were reported to test positive for another respiratory viral pathogen, including influenza or respiratory syncytial virus.
T79 8339-8437 Sentence denotes Forty-two (20%) patients were hospitalized, and four (2%) were admitted to an intensive care unit.
T80 8438-8580 Sentence denotes One patient was deceased at the time of notification; testing for this person was negative, and an alternative cause of death was established.
T81 8581-8898 Sentence denotes Travel-related risk was identified for 148 (70%) persons, 42 (20%) had close contact with ill patients with laboratory-confirmed 2019-nCoV infection or PUIs, 18 (9%) had both travel- and contact-related risks, and two (<1%) had possible contact with a laboratory-confirmed 2019-nCoV patient and were therefore tested.
T82 8899-8976 Sentence denotes Among the 210 persons tested, 11 (5%) were found to have 2019-nCoV infection.
T83 8977-9157 Sentence denotes Nine of these persons had traveled to Wuhan City; two persons had not traveled but had been in close contact with patients with laboratory-confirmed 2019-nCoV in the United States.
T84 9158-9224 Sentence denotes All were symptomatic with fever (subjective or measured) or cough.
T85 9226-9236 Sentence denotes Discussion
T86 9237-9365 Sentence denotes Quickly identifying persons at risk for 2019-nCoV is critical to slowing the potential spread of 2019-nCoV in the United States.
T87 9366-9504 Sentence denotes This report describes CDC’s current approach to facilitating recommended diagnostic testing of persons who might have 2019-nCoV infection.
T88 9505-9845 Sentence denotes In response to the emergence of 2019-nCoV in China during a time of rapidly evolving understanding of the epidemiology and clinical presentation of 2019-nCoV infection, CDC has provided consultation regarding persons suspected of being at risk for 2019-nCoV to public health officials and health care providers throughout the United States.
T89 9846-9943 Sentence denotes Epidemiologic risk factors among the 210 persons tested for 2019-nCoV were not limited to travel:
T90 9944-10079 Sentence denotes 20% of PUIs tested had not recently traveled to China but reported close contact with a person being evaluated for 2019-nCoV infection.
T91 10080-10336 Sentence denotes Because person-to-person transmission is expected to continue, and as further travel restrictions are implemented, it is likely that the proportion of PUIs with such contact risk in the United States will increase among all persons evaluated for 2019-nCoV.
T92 10337-10494 Sentence denotes CDC mobilized early in the response and state and local health departments similarly increased capacity to provide clinical consultation regarding 2019-nCoV.
T93 10495-10664 Sentence denotes The collection of clinical and epidemiologic data that described characteristics of persons tested for 2019-nCoV helped to inform changes to criteria for PUI evaluation.
T94 10665-10883 Sentence denotes On January 31, 2020, CDC published updated PUI guidance (8) in response to the evolving global epidemiology of 2019-nCoV, including the rapid geographic expansion and documentation of person-to-person transmission (9).
T95 10884-11208 Sentence denotes Updated guidance emphasizes 2019-nCoV testing for symptomatic persons in close contact with patients with laboratory-confirmed 2019-nCoV infection, persons returning from Hubei province in addition to Wuhan City, and persons from mainland China requiring hospitalization because of fever and lower respiratory tract illness.
T96 11209-11349 Sentence denotes Additional refinements to this approach likely will be needed in the future as understanding of 2019-nCoV epidemiology continues to improve.
T97 11350-11420 Sentence denotes The findings in this report are subject to at least three limitations.
T98 11421-11541 Sentence denotes First, the number of clinical inquiries received by CDC does not represent all inquiries received by health departments.
T99 11542-11710 Sentence denotes Second, because the primary objective of this effort was to guide a timely public health response, some clinical and epidemiologic risk factor data might be incomplete.
T100 11711-11938 Sentence denotes Finally, given the limited available epidemiologic information early in the outbreak, to provide some latitude for clinical decision-making regarding diagnostic testing, the PUI definition was not strictly applied in all cases.
T101 11939-12126 Sentence denotes A coordinated national effort to diagnose 2019-nCoV among persons at high risk for infection is important to facilitate appropriate management and limit transmission in the United States.
T102 12127-12230 Sentence denotes CDC’s website provides guidance for health care professionals on evaluating persons for 2019-nCoV (10).
T103 12231-12550 Sentence denotes Clinicians should maintain a high index of suspicion for possible 2019-nCoV illness not only among persons with fever and lower respiratory tract illness who report travel from China in the past 14 days but also symptomatic persons who have had close contact with patients with laboratory-confirmed 2019-nCoV infection.
T104 12551-12714 Sentence denotes Clinicians should consult their local and state health departments when they suspect possible 2019-nCoV illness to facilitate diagnosis and aid prevention efforts.
T105 12715-12722 Sentence denotes Summary
T106 12724-12763 Sentence denotes What is already known about this topic?
T107 12764-12961 Sentence denotes During a 2020 outbreak of novel coronavirus (2019-nCoV) infection, CDC provided consultation to public health officials and health care providers evaluating persons at risk for 2019-nCoV infection.
T108 12963-12992 Sentence denotes What is added by this report?
T109 12993-13308 Sentence denotes During January 2020, CDC responded to clinical inquiries regarding approximately 650 persons in the United States and tested 210 for 2019-nCoV, one fifth of whom reported no recent travel-related risk but had close contact with a 2019-nCoV patient or a person under investigation for 2019-nCoV in the United States.
T110 13310-13363 Sentence denotes What are the implications for public health practice?
T111 13364-13568 Sentence denotes Health care providers should remain vigilant regarding possible 2019-nCoV exposure not only among returning travelers, but also among persons in close contact with 2019-nCoV patients in the United States.
T112 13570-13585 Sentence denotes Acknowledgments
T113 13586-14109 Sentence denotes Laboratory and Epidemiology Task Forces; state and local health department partners; Chris Edens, Jessica Leung, Michael Wellman, CDC; David Hyung Won Oh, Tufts University School of Medicine, Boston, Massachusetts; Sean Stapleton, Cornell University College of Veterinary Medicine, Ithaca, New York; Emily Trautner, Emory University School of Medicine, Atlanta, Georgia. * https://www.fda.gov/news-events/press-announcements/fda-takes-significant-step-coronavirus-response-efforts-issues-emergency-use-authorization-first.
T114 14111-14262 Sentence denotes All authors have completed and submitted the International Committee of Medical Journal Editors form for disclosure of potential conflicts of interest.
T115 14263-14313 Sentence denotes No potential conflicts of interest were disclosed.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 193-202 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T2 319-328 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T3 2764-2769 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T4 2825-2830 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T5 2834-2854 Phenotype denotes difficulty breathing http://purl.obolibrary.org/obo/HP_0002098
T6 6211-6216 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T7 6270-6275 Phenotype denotes Cough http://purl.obolibrary.org/obo/HP_0012735
T8 6279-6298 Phenotype denotes shortness of breath http://purl.obolibrary.org/obo/HP_0002098
T9 7931-7936 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T10 7999-8004 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T11 8008-8027 Phenotype denotes shortness of breath http://purl.obolibrary.org/obo/HP_0002098
T12 8069-8080 Phenotype denotes sore throat http://purl.obolibrary.org/obo/HP_0033050
T13 8082-8092 Phenotype denotes rhinorrhea http://purl.obolibrary.org/obo/HP_0031417
T14 8171-8176 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T15 8180-8199 Phenotype denotes shortness of breath http://purl.obolibrary.org/obo/HP_0002098
T16 9184-9189 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T17 9218-9223 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T18 11166-11171 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T19 12343-12348 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945

2_test

Id Subject Object Predicate Lexical cue
32053579-31991079-70157398 10880-10881 31991079 denotes 9