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PMC:7017878 / 2419-3844 JSONTXT

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LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T27 88-99 UBERON:0001004 denotes respiratory
T26 110-114 SP_10 denotes SARS
T25 145-148 SP_2 denotes bat
T24 156-167 NCBITaxon:11118 denotes coronavirus
T23 370-375 NCBITaxon:8782 denotes avian
T22 491-502 NCBITaxon:11118 denotes coronavirus
T21 504-513 SP_7 denotes 2019-nCoV
T20 595-600 NCBITaxon:10239 denotes virus
T19 615-626 NCBITaxon:11118 denotes coronavirus
T18 643-651 SP_10 denotes SARS-CoV
T17 656-659 SP_2 denotes bat
T16 702-707 NCBITaxon:10239 denotes virus
T15 724-735 SP_2;NCBITaxon:7729 denotes Rhinolophus
T14 736-743 NCBITaxon:8296 denotes affinis
T13 744-747 SP_2 denotes bat
T12 801-810 SP_7 denotes 2019-nCoV
T11 883-888 SP_6;NCBITaxon:9606 denotes human
T10 1066-1070 CHEBI:33290;CHEBI:33290 denotes food
T9 1136-1140 SP_10 denotes SARS
T8 1151-1160 SP_7 denotes 2019-nCoV

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T9 45-55 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T10 75-108 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T11 110-114 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T12 240-258 Disease denotes infectious disease http://purl.obolibrary.org/obo/MONDO_0005550
T13 370-385 Disease denotes avian influenza http://purl.obolibrary.org/obo/MONDO_0018695
T14 376-385 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T15 643-651 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T16 643-647 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T17 1136-1140 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T18 1201-1217 Disease denotes zoonotic disease http://purl.obolibrary.org/obo/MONDO_0025481
T19 1396-1412 Disease denotes zoonotic disease http://purl.obolibrary.org/obo/MONDO_0025481

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T19 143-144 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T20 145-148 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T21 204-205 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T22 483-484 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T23 595-600 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T24 604-605 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T25 656-659 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T26 700-701 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T27 702-707 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T28 722-723 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T29 744-747 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T30 883-888 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T31 986-990 http://purl.obolibrary.org/obo/PR_000001318 denotes sell
T32 1024-1025 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T33 1071-1074 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T34 1171-1172 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 606-611 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T19 0-1106 Sentence denotes In recognition of the challenges of emerging infectious diseases after the severe acute respiratory syndrome (SARS) outbreak in 2002 caused by a bat-origin coronavirus, the Chinese government established a national real-time hospital-based infectious disease reporting system.1 Likewise, live poultry market interventions were initiated in response to highly pathogenic avian influenza (HPAI) in southern China in 2001.8 In December 2019 (after the completion of the current study), a novel coronavirus (2019-nCoV) emerged in Wuhan, China and spread rapidly across China and the world.9,10 This virus is a group 2b coronavirus, which includes SARS-CoV and bat SARSr-CoVs, and its closest relative is a virus identified in a Rhinolophus affinis bat from Yunnan.10,11 Environmental samples positive for 2019-nCoV were found in an urban market in Wuhan where some of the earliest known human cases originated.12,13 This likely index site sold predominantly seafood, but is also thought to sell live wildlife at the market, and a temporary ban on the wildlife trade for food has been put in place across China.
T20 1107-1425 Sentence denotes These efforts in response to SARS, HPAI and 2019-nCoV represent a reaction-driven response to zoonotic disease outbreaks, whereas, apart from the new temporary ban on wildlife trade, only limited preventative measures are currently being enacted in the region to reduce the risk of future zoonotic disease outbreaks.14

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
67 744-747 Gene denotes bat Gene:570
68 656-659 Gene denotes bat Gene:570
69 145-148 Gene denotes bat Gene:570
70 156-167 Species denotes coronavirus Tax:11118
71 485-502 Species denotes novel coronavirus Tax:2697049
72 504-513 Species denotes 2019-nCoV Tax:2697049
73 643-651 Species denotes SARS-CoV Tax:694009
74 666-670 Species denotes CoVs Tax:11118
75 724-743 Species denotes Rhinolophus affinis Tax:59477
76 766-787 Species denotes Environmental samples Tax:1275957
77 801-810 Species denotes 2019-nCoV Tax:2697049
78 883-888 Species denotes human Tax:9606
79 1151-1160 Species denotes 2019-nCoV Tax:2697049
80 615-626 Species denotes coronavirus Tax:11118
81 45-64 Disease denotes infectious diseases MESH:D003141
82 75-108 Disease denotes severe acute respiratory syndrome MESH:D045169
83 110-114 Disease denotes SARS MESH:D045169
84 240-258 Disease denotes infectious disease MESH:D003141
85 387-391 Disease denotes HPAI
86 1136-1140 Disease denotes SARS MESH:D045169
87 1142-1146 Disease denotes HPAI
88 1201-1217 Disease denotes zoonotic disease MESH:D015047
89 1396-1412 Disease denotes zoonotic disease MESH:D015047

2_test

Id Subject Object Predicate Lexical cue
32040190-26654122-48103165 419-420 26654122 denotes 8
32040190-24858904-48103166 1423-1425 24858904 denotes 14
T18828 419-420 26654122 denotes 8
T14505 1423-1425 24858904 denotes 14