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PMC:7017878 / 1528-4422 JSONTXT

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LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T37 212-220 NCBITaxon:species denotes wildlife
T36 320-325 SP_6;NCBITaxon:9606 denotes human
T35 326-332 NCBITaxon:33208 denotes animal
T34 574-581 NCBITaxon:33208 denotes animals
T33 676-683 NCBITaxon:33208 denotes animals
T32 752-758 NCBITaxon:9606 denotes humans
T31 763-770 NCBITaxon:33208 denotes animals
T30 823-831 NCBITaxon:species denotes wildlife
T29 832-841 NCBITaxon:33208 denotes livestock
T28 842-847 SP_6;NCBITaxon:9606 denotes human
T27 979-990 UBERON:0001004 denotes respiratory
T26 1001-1005 SP_10 denotes SARS
T25 1036-1039 SP_2 denotes bat
T24 1047-1058 NCBITaxon:11118 denotes coronavirus
T23 1261-1266 NCBITaxon:8782 denotes avian
T22 1382-1393 NCBITaxon:11118 denotes coronavirus
T21 1395-1404 SP_7 denotes 2019-nCoV
T20 1486-1491 NCBITaxon:10239 denotes virus
T19 1506-1517 NCBITaxon:11118 denotes coronavirus
T18 1534-1542 SP_10 denotes SARS-CoV
T17 1547-1550 SP_2 denotes bat
T16 1593-1598 NCBITaxon:10239 denotes virus
T15 1615-1626 SP_2;NCBITaxon:7729 denotes Rhinolophus
T14 1627-1634 NCBITaxon:8296 denotes affinis
T13 1635-1638 SP_2 denotes bat
T12 1692-1701 SP_7 denotes 2019-nCoV
T11 1774-1779 SP_6;NCBITaxon:9606 denotes human
T10 1957-1961 CHEBI:33290;CHEBI:33290 denotes food
T9 2027-2031 SP_10 denotes SARS
T8 2042-2051 SP_7 denotes 2019-nCoV
T7 2686-2692 NCBITaxon:9606 denotes humans
T6 2694-2701 NCBITaxon:33208 denotes animals

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T5 38-55 Disease denotes zoonotic diseases http://purl.obolibrary.org/obo/MONDO_0025481
T6 175-192 Disease denotes zoonotic diseases http://purl.obolibrary.org/obo/MONDO_0025481
T7 375-392 Disease denotes zoonotic diseases http://purl.obolibrary.org/obo/MONDO_0025481
T8 862-878 Disease denotes zoonotic disease http://purl.obolibrary.org/obo/MONDO_0025481
T9 936-946 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T10 966-999 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T11 1001-1005 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T12 1131-1149 Disease denotes infectious disease http://purl.obolibrary.org/obo/MONDO_0005550
T13 1261-1276 Disease denotes avian influenza http://purl.obolibrary.org/obo/MONDO_0018695
T14 1267-1276 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T15 1534-1542 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T16 1534-1538 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T17 2027-2031 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T18 2092-2108 Disease denotes zoonotic disease http://purl.obolibrary.org/obo/MONDO_0025481
T19 2287-2303 Disease denotes zoonotic disease http://purl.obolibrary.org/obo/MONDO_0025481
T20 2388-2404 Disease denotes zoonotic disease http://purl.obolibrary.org/obo/MONDO_0025481

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T9 150-151 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T10 320-325 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T11 326-332 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animal
T12 574-581 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animals
T13 636-639 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T14 676-683 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animals
T15 752-758 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T16 763-770 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animals
T17 821-822 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T18 842-847 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T19 1034-1035 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T20 1036-1039 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T21 1095-1096 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T22 1374-1375 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T23 1486-1491 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T24 1495-1496 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T25 1547-1550 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T26 1591-1592 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T27 1593-1598 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T28 1613-1614 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T29 1635-1638 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T30 1774-1779 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T31 1877-1881 http://purl.obolibrary.org/obo/PR_000001318 denotes sell
T32 1915-1916 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T33 1962-1965 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T34 2062-2063 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T35 2557-2558 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T36 2616-2621 http://purl.obolibrary.org/obo/UBERON_0007688 denotes field
T37 2686-2692 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T38 2694-2701 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animals

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 1497-1502 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T2 2821-2825 Chemical denotes base http://purl.obolibrary.org/obo/CHEBI_22695

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T17 0-12 Sentence denotes Introduction
T18 13-890 Sentence denotes Emerging and re-emerging zoonotic diseases are key contributors to morbidity and mortality in southern China.1,2 This region, considered a ‘hotspot’ for emerging zoonotic diseases, harbours abundant wildlife while also undergoing land use change and natural resource overexploitation leading to intensified human–animal interactions that favour the emergence of zoonotic diseases.3 People living in the rural areas of southern China primarily cultivate rice and fruits, raise swine and poultry in households or on small farms,4 but also traditionally hunt wild animals as an alternative income source.5 The mixed landscape has abundant crops, which attracts wild animals into the communities, and livestock rearing is common.6 This brings humans and animals into close contact in dense populations, creating a wildlife–livestock–human interface for zoonotic disease emergence.7
T19 891-1997 Sentence denotes In recognition of the challenges of emerging infectious diseases after the severe acute respiratory syndrome (SARS) outbreak in 2002 caused by a bat-origin coronavirus, the Chinese government established a national real-time hospital-based infectious disease reporting system.1 Likewise, live poultry market interventions were initiated in response to highly pathogenic avian influenza (HPAI) in southern China in 2001.8 In December 2019 (after the completion of the current study), a novel coronavirus (2019-nCoV) emerged in Wuhan, China and spread rapidly across China and the world.9,10 This virus is a group 2b coronavirus, which includes SARS-CoV and bat SARSr-CoVs, and its closest relative is a virus identified in a Rhinolophus affinis bat from Yunnan.10,11 Environmental samples positive for 2019-nCoV were found in an urban market in Wuhan where some of the earliest known human cases originated.12,13 This likely index site sold predominantly seafood, but is also thought to sell live wildlife at the market, and a temporary ban on the wildlife trade for food has been put in place across China.
T20 1998-2316 Sentence denotes These efforts in response to SARS, HPAI and 2019-nCoV represent a reaction-driven response to zoonotic disease outbreaks, whereas, apart from the new temporary ban on wildlife trade, only limited preventative measures are currently being enacted in the region to reduce the risk of future zoonotic disease outbreaks.14
T21 2317-2894 Sentence denotes However, detailed knowledge of the social and ecological mechanisms of zoonotic disease emergence in the region is limited, and therefore cannot yet inform evidence-based policies and practices for targeted surveillance programmes.15 Using a qualitative approach through ethnographic interviews and field observations, this study aimed to understand interactions among humans, animals and ecosystems, to shed light on the zoonotic risks in these presumed high-risk communities and to develop an evidence base for identifying appropriate strategies for zoonotic risk mitigation.

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
33 320-325 Species denotes human Tax:9606
34 395-401 Species denotes People Tax:9606
35 466-470 Species denotes rice Tax:4530
36 489-494 Species denotes swine Tax:9823
37 752-758 Species denotes humans Tax:9606
38 842-847 Species denotes human Tax:9606
39 38-55 Disease denotes zoonotic diseases MESH:D015047
40 94-103 Disease denotes mortality MESH:D003643
41 175-192 Disease denotes zoonotic diseases MESH:D015047
42 375-392 Disease denotes zoonotic diseases MESH:D015047
43 862-878 Disease denotes zoonotic disease MESH:D015047
67 1635-1638 Gene denotes bat Gene:570
68 1547-1550 Gene denotes bat Gene:570
69 1036-1039 Gene denotes bat Gene:570
70 1047-1058 Species denotes coronavirus Tax:11118
71 1376-1393 Species denotes novel coronavirus Tax:2697049
72 1395-1404 Species denotes 2019-nCoV Tax:2697049
73 1534-1542 Species denotes SARS-CoV Tax:694009
74 1557-1561 Species denotes CoVs Tax:11118
75 1615-1634 Species denotes Rhinolophus affinis Tax:59477
76 1657-1678 Species denotes Environmental samples Tax:1275957
77 1692-1701 Species denotes 2019-nCoV Tax:2697049
78 1774-1779 Species denotes human Tax:9606
79 2042-2051 Species denotes 2019-nCoV Tax:2697049
80 1506-1517 Species denotes coronavirus Tax:11118
81 936-955 Disease denotes infectious diseases MESH:D003141
82 966-999 Disease denotes severe acute respiratory syndrome MESH:D045169
83 1001-1005 Disease denotes SARS MESH:D045169
84 1131-1149 Disease denotes infectious disease MESH:D003141
85 1278-1282 Disease denotes HPAI
86 2027-2031 Disease denotes SARS MESH:D045169
87 2033-2037 Disease denotes HPAI
88 2092-2108 Disease denotes zoonotic disease MESH:D015047
89 2287-2303 Disease denotes zoonotic disease MESH:D015047
94 2686-2692 Species denotes humans Tax:9606
95 2388-2404 Disease denotes zoonotic disease MESH:D015047
96 2739-2747 Disease denotes zoonotic MESH:D015047
97 2869-2877 Disease denotes zoonotic MESH:D015047

2_test

Id Subject Object Predicate Lexical cue
32040190-22359565-48103161 124-125 22359565 denotes 2
32040190-29066781-48103162 393-394 29066781 denotes 3
32040190-32214694-48103163 614-615 32214694 denotes 5
32040190-23671097-48103164 889-890 23671097 denotes 7
32040190-26654122-48103165 1310-1311 26654122 denotes 8
32040190-24858904-48103166 2314-2316 24858904 denotes 14
32040190-30285857-48103167 2548-2550 30285857 denotes 15
T88204 124-125 22359565 denotes 2
T68990 393-394 29066781 denotes 3
T7763 614-615 32214694 denotes 5
T80317 889-890 23671097 denotes 7
T18828 1310-1311 26654122 denotes 8
T14505 2314-2316 24858904 denotes 14
T99910 2548-2550 30285857 denotes 15