> top > docs > PMC:7014669 > annotations

PMC:7014669 JSONTXT

Annnotations TAB JSON ListView MergeView

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
2 58-75 Species denotes novel coronavirus Tax:2697049
3 77-86 Species denotes 2019-nCoV Tax:2697049
6 241-258 Species denotes novel coronavirus Tax:2697049
7 260-269 Species denotes 2019-nCoV Tax:2697049
13 932-936 Species denotes H1N1 Tax:114727
14 997-1007 Species denotes poliovirus Tax:138950
15 1016-1021 Species denotes Ebola Tax:1570291
16 1071-1081 Species denotes Zika virus Tax:64320
17 1121-1126 Species denotes Ebola Tax:1570291
21 1254-1276 Species denotes 2019 novel coronavirus Tax:2697049
22 1615-1620 Species denotes human Tax:9606
23 1624-1629 Species denotes human Tax:9606
30 1994-2003 Species denotes 2019-nCoV Tax:2697049
31 2055-2063 Species denotes patients Tax:9606
32 2121-2128 Species denotes persons Tax:9606
33 2153-2170 Species denotes novel coronavirus Tax:2697049
34 1834-1835 Chemical denotes Q MESH:D005973
35 2069-2088 Disease denotes 2019-nCoV infection MESH:C000657245
40 2535-2552 Species denotes novel coronavirus Tax:2697049
41 2554-2563 Species denotes 2019-nCoV Tax:2697049
42 2639-2647 Species denotes SARS-CoV Tax:694009
43 2412-2421 Disease denotes pneumonia MESH:D011014
46 2721-2730 Species denotes 2019-nCoV Tax:2697049
47 2907-2916 Species denotes 2019-nCoV Tax:2697049
52 3087-3092 Species denotes human Tax:9606
53 3096-3101 Species denotes human Tax:9606
54 2981-2987 Disease denotes deaths MESH:D003643
55 3195-3203 Disease denotes infected MESH:D007239
57 3250-3259 Species denotes 2019-nCoV Tax:2697049
59 3709-3715 Disease denotes deaths MESH:D003643
61 4226-4235 Species denotes 2019-nCoV Tax:2697049
63 4273-4282 Disease denotes infection MESH:D007239
65 4385-4394 Disease denotes infection MESH:D007239
67 4551-4554 Chemical denotes EEA
71 4600-4605 Species denotes human Tax:9606
72 4609-4614 Species denotes human Tax:9606
73 4722-4731 Disease denotes infection MESH:D007239
78 4983-4988 Species denotes human Tax:9606
79 4992-4997 Species denotes human Tax:9606
80 4875-4878 Chemical denotes EEA
81 5025-5028 Chemical denotes EEA
85 5239-5244 Species denotes human Tax:9606
86 5248-5253 Species denotes human Tax:9606
87 5158-5167 Disease denotes infection MESH:D007239

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 932-946 Disease denotes H1N1 influenza http://purl.obolibrary.org/obo/MONDO_0005460
T2 937-946 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T3 1016-1021 Disease denotes Ebola http://purl.obolibrary.org/obo/MONDO_0005737
T4 1071-1075 Disease denotes Zika http://purl.obolibrary.org/obo/MONDO_0018661
T5 1121-1126 Disease denotes Ebola http://purl.obolibrary.org/obo/MONDO_0005737
T6 2069-2088 Disease denotes 2019-nCoV infection http://purl.obolibrary.org/obo/MONDO_0100096
T7 2079-2088 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T8 2412-2421 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T9 2639-2647 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T10 4273-4282 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T11 4385-4394 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T12 4722-4731 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T13 5158-5167 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 36-48 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T2 192-204 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T3 271-272 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T4 624-629 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T5 798-803 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T6 817-818 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T7 1076-1081 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T8 1409-1410 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T9 1471-1476 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T10 1615-1620 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T11 1624-1629 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T12 1775-1776 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T13 2399-2400 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T14 2520-2523 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T15 2533-2534 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T16 3009-3014 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T17 3087-3092 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T18 3096-3101 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T19 3383-3384 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T20 3549-3552 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T21 3591-3596 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T22 4482-4483 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T23 4600-4605 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T24 4609-4614 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T25 4756-4759 http://purl.obolibrary.org/obo/CL_0000784 denotes IPC
T26 4895-4896 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T27 4929-4932 http://purl.obolibrary.org/obo/CL_0000784 denotes IPC
T28 4983-4988 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T29 4992-4997 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T30 5239-5244 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T31 5248-5253 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T32 5286-5287 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 370-372 Chemical denotes DG http://purl.obolibrary.org/obo/CHEBI_73450
T2 589-591 Chemical denotes DG http://purl.obolibrary.org/obo/CHEBI_73450
T3 4756-4759 Chemical denotes IPC http://purl.obolibrary.org/obo/CHEBI_53004
T4 4929-4932 Chemical denotes IPC http://purl.obolibrary.org/obo/CHEBI_53004
T5 5131-5142 Chemical denotes application http://purl.obolibrary.org/obo/CHEBI_33232

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 534-545 http://purl.obolibrary.org/obo/GO_0065007 denotes Regulations

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T1 0-22 Sentence denotes Note from the editors:
T2 23-142 Sentence denotes World Health Organization declares novel coronavirus (2019-nCoV) sixth public health emergency of international concern
T3 144-330 Sentence denotes Yesterday, on 30 January 2020, the World Health Organization (WHO) declared the emergence of the novel coronavirus (2019-nCoV) a public health emergency of international concern (PHEIC).
T4 331-563 Sentence denotes This decision by WHO Director-General (DG) Tedros Adhanom Ghebreyesus, was made following the recommendations of the Emergency Committee in its second meeting [1] convened under the International Health Regulations (IHR) (2005) [2].
T5 564-861 Sentence denotes In his decision, the WHO DG stressed ‘the potential for the virus to spread to countries with weaker health systems, and which are ill-prepared to deal with it’ as one major concern and the importance of ‘preventing the spread of the virus and ensuring a measured and evidence-based response’ [3].
T6 862-1136 Sentence denotes This sixth PHEIC under the IHR follows those declared in 2009 for the H1N1 influenza pandemic, in 2014 for the international spread of poliovirus and the Ebola outbreak in West Africa, in 2016 for the 2015/16 Zika virus epidemic and in July 2019 for the Kivu Ebola epidemic.
T7 1137-1332 Sentence denotes Following the declaration of the PHEIC, we would like to remind the readers of Eurosurveillance about our dedicated ‘2019 novel coronavirus collection’ that we update regularly with new articles.
T8 1333-1643 Sentence denotes It already contains several articles about, for example, the development of a diagnostic methodology based on RT-PCR without the need for virus material, the severity among hospitalised cases, early-stage estimates of the importation risk to Europe, and estimated patterns of early human-to-human transmission.
T9 1644-1795 Sentence denotes The European Centre for Disease Prevention and Control (ECDC) provides regularly updated information relevant to Europe through on a dedicated webpage.
T10 1796-1931 Sentence denotes Besides general information including Q&As, daily case counts, and maps with disease distribution, examples of latest updates comprise:
T11 1932-2199 Sentence denotes Algorithm for management of contacts of probable or confirmed 2019-nCoV cases, Advice to healthcare workers: management of patients with 2019-nCoV infection and Public health management of persons having had contact with novel coronavirus cases in the European Union.
T12 2200-2308 Sentence denotes The ECDC also publishes regular risk assessments, the Box contains the summary from the one published today.
T13 2309-2313 Sentence denotes Box.
T14 2315-2377 Sentence denotes Summary of the ECDC rapid risk assessment from 31 January 2020
T15 2378-2494 Sentence denotes On 31 December 2019, a cluster of pneumonia cases of unknown aetiology was reported in Wuhan, Hubei Province, China.
T16 2495-2654 Sentence denotes On 9 January 2020, China CDC reported a novel coronavirus (2019-nCoV) as the causative agent of this outbreak, which is phylogenetically in the SARS-CoV clade.
T17 2655-2864 Sentence denotes As of 30 January 2020 09:00, more than 7 000 laboratory-confirmed 2019-nCoV cases have been reported worldwide, mainly in China, but also with more than 70 imported cases from other countries around the world.
T18 2865-2948 Sentence denotes Details on the epidemiological update for 2019-nCoV can be found on ECDC’s website.
T19 2949-3034 Sentence denotes So far, one hundred and seventy deaths associated with this virus have been reported.
T20 3035-3141 Sentence denotes On 20 January, Chinese health authorities confirmed human-to-human transmission outside of Hubei province.
T21 3142-3204 Sentence denotes Sixteen healthcare workers are reported to have been infected.
T22 3205-3367 Sentence denotes On 24 January 2020, the first three cases of 2019-nCoV imported into the EU/EEA were identified in France and one additional case was reported on 29 January 2020.
T23 3368-3481 Sentence denotes On 28 January, a cluster of four locally-acquired cases, with indirect links to Wuhan, was reported from Germany.
T24 3482-3542 Sentence denotes On 29 January, Finland reported an imported case from Wuhan.
T25 3543-3690 Sentence denotes China CDC assesses the transmissibility of this virus to be sufficient for sustained community transmission without unprecedented control measures.
T26 3691-3767 Sentence denotes Further cases and deaths in China are expected in the coming days and weeks.
T27 3768-3863 Sentence denotes Further cases or clusters are also expected among travellers from China, mainly Hubei province.
T28 3864-4003 Sentence denotes Therefore, health authorities in the EU/EEA Member States should remain vigilant and strengthen their capacity to respond to such an event.
T29 4004-4127 Sentence denotes There are considerable uncertainties in assessing the risk of this event, due to lack of detailed epidemiological analyses.
T30 4128-4201 Sentence denotes On the basis of the information currently available, ECDC considers that:
T31 4202-4254 Sentence denotes the potential impact of 2019-nCoV outbreaks is high;
T32 4255-4366 Sentence denotes the likelihood of infection for EU/EEA citizens residing in or visiting Hubei province is estimated to be high;
T33 4367-4472 Sentence denotes the likelihood of infection for EU/EEA citizens in other Chinese provinces is moderate and will increase;
T34 4473-4555 Sentence denotes there is a moderate-to-high likelihood of additional imported cases in the EU/EEA;
T35 4556-4844 Sentence denotes the likelihood of observing further limited human-to-human transmission within the EU/EEA is estimated as very low to low if cases are detected early and appropriate infection prevention and control (IPC) practices are implemented, particularly in healthcare settings in EU/EEA countries;
T36 4845-5058 Sentence denotes assuming that cases in the EU/EEA are detected in a timely manner and that rigorous IPC measures are applied, the likelihood of sustained human-to-human transmission within the EU/EEA is currently very low to low;
T37 5059-5381 Sentence denotes the late detection of an imported case in an EU/EEA country without the application of appropriate infection prevention and control measures would result in the high likelihood of human-to-human transmission, therefore in such a scenario the risk of secondary transmission in the community setting is estimated to be high.
T38 5382-5393 Sentence denotes Source: [4]
T39 5395-5409 Sentence denotes Editorial note
T40 5410-5472 Sentence denotes This editorial was published as an e-Alert on 31 January 2020.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 2412-2421 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090