> top > docs > PMC:7014668 > annotations

PMC:7014668 JSONTXT

Annnotations TAB JSON ListView MergeView

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
3 73-90 Species denotes novel coronavirus Tax:2697049
4 92-101 Species denotes 2019-nCoV Tax:2697049
5 59-67 Disease denotes infected MESH:D007239
10 175-194 Disease denotes 2019-nCoV infection MESH:C000657245
11 349-357 Disease denotes infected MESH:D007239
12 570-588 Disease denotes 2019-nCoV infected MESH:C000657245
13 618-626 Disease denotes infected MESH:D007239
18 689-706 Species denotes novel coronavirus Tax:2697049
19 708-717 Species denotes 2019-nCoV Tax:2697049
20 758-764 Disease denotes deaths MESH:D003643
21 1023-1031 Disease denotes infected MESH:D007239
28 1387-1391 Species denotes H1N1 Tax:114727
29 1613-1622 Species denotes 2019-nCoV Tax:2697049
30 1352-1356 Disease denotes SARS MESH:D045169
31 1430-1438 Disease denotes infected MESH:D007239
32 1599-1609 Disease denotes infections MESH:D007239
33 1727-1746 Disease denotes 2019-nCoV infection MESH:C000657245
35 1891-1900 Disease denotes infection MESH:D007239
43 1933-1951 Disease denotes 2019-nCoV infected MESH:C000657245
44 2209-2217 Disease denotes infected MESH:D007239
45 2263-2268 Disease denotes fever MESH:D005334
46 2514-2523 Disease denotes infection MESH:D007239
47 2662-2670 Disease denotes infected MESH:D007239
48 2835-2843 Disease denotes infected MESH:D007239
49 3108-3118 Disease denotes infections MESH:D007239
52 3808-3817 Species denotes 2019-nCoV Tax:2697049
53 3712-3722 Disease denotes infections MESH:D007239
57 3381-3398 Species denotes novel coronavirus Tax:2697049
58 3400-3409 Species denotes 2019-nCoV Tax:2697049
59 3367-3375 Disease denotes infected MESH:D007239
64 4251-4260 Disease denotes infection MESH:D007239
65 4810-4819 Disease denotes infection MESH:D007239
66 4855-4860 Disease denotes fever MESH:D005334
67 5040-5049 Disease denotes infection MESH:D007239
72 5567-5584 Species denotes novel coronavirus Tax:2697049
73 5586-5595 Species denotes 2019-nCoV Tax:2697049
74 5519-5528 Disease denotes infection MESH:D007239
75 5553-5561 Disease denotes infected MESH:D007239
77 5629-5638 Disease denotes infection MESH:D007239
81 6269-6286 Species denotes novel coronavirus Tax:2697049
82 6288-6297 Species denotes 2019-nCoV Tax:2697049
83 6255-6263 Disease denotes infected MESH:D007239
85 6874-6883 Disease denotes infection MESH:D007239
87 6989-6997 Disease denotes infected MESH:D007239
89 7451-7459 Disease denotes infected MESH:D007239
93 7733-7750 Species denotes novel coronavirus Tax:2697049
94 7752-7761 Species denotes 2019-nCoV Tax:2697049
95 7719-7727 Disease denotes infected MESH:D007239
97 8001-8011 Disease denotes infections MESH:D007239
102 8190-8198 Disease denotes infected MESH:D007239
103 8317-8327 Disease denotes infections MESH:D007239
104 8418-8438 Disease denotes 2019-nCoV infections MESH:C000657245
105 8653-8661 Disease denotes infected MESH:D007239
116 8821-8830 Species denotes 2019-nCoV Tax:2697049
117 9684-9693 Species denotes 2019-nCoV Tax:2697049
118 9000-9005 Disease denotes fever MESH:D005334
119 9085-9104 Disease denotes 2019-nCoV infection MESH:C000657245
120 9375-9383 Disease denotes infected MESH:D007239
121 9518-9528 Disease denotes infections MESH:D007239
122 9750-9776 Disease denotes acute respiratory syndrome MESH:D012120
123 9778-9782 Disease denotes SARS MESH:D045169
124 9819-9829 Disease denotes infections MESH:D007239
125 9916-9924 Disease denotes infected MESH:D007239
132 10030-10036 Species denotes people Tax:9606
133 10367-10373 Species denotes people Tax:9606
134 10021-10029 Disease denotes infected MESH:D007239
135 10339-10343 Disease denotes SARS MESH:D045169
136 10465-10484 Disease denotes 2019-nCoV infection MESH:C000657245
137 10597-10605 Disease denotes infected MESH:D007239
142 10804-10813 Species denotes 2019-nCoV Tax:2697049
143 10948-10952 Disease denotes SARS MESH:D045169
144 11122-11132 Disease denotes infections MESH:D007239
145 11319-11328 Disease denotes infection MESH:D007239
152 12107-12116 Species denotes 2019-nCoV Tax:2697049
153 11643-11662 Disease denotes 2019-nCoV infection MESH:C000657245
154 11845-11854 Disease denotes infection MESH:D007239
155 11903-11908 Disease denotes fever MESH:D005334
156 11992-12000 Disease denotes infected MESH:D007239
157 12024-12034 Disease denotes infections MESH:D007239
160 12655-12674 Disease denotes 2019-nCoV infection MESH:C000657245
161 12814-12822 Disease denotes infected MESH:D007239
164 14212-14216 Species denotes nCoV Tax:2697049
165 14184-14203 Disease denotes Infectious Diseases MESH:D003141
167 14358-14365 Species denotes Timothy Tax:15957
171 14688-14692 Species denotes nCoV Tax:2697049
172 14733-14737 Species denotes nCoV Tax:2697049
173 14660-14679 Disease denotes Infectious Diseases MESH:D003141

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 7848-7852 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T2 9021-9025 Body_part denotes body http://purl.org/sig/ont/fma/fma256135

LitCovid_AGAC

Id Subject Object Predicate Lexical cue
p2363s10 1110-1116 NegReg denotes ceased

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 175-194 Disease denotes 2019-nCoV infection http://purl.obolibrary.org/obo/MONDO_0100096
T2 185-194 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T3 570-588 Disease denotes 2019-nCoV infected http://purl.obolibrary.org/obo/MONDO_0100096
T4 1352-1356 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T5 1375-1392 Disease denotes influenza A(H1N1) http://purl.obolibrary.org/obo/MONDO_0005460
T6 1375-1384 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T7 1599-1609 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T8 1727-1746 Disease denotes 2019-nCoV infection http://purl.obolibrary.org/obo/MONDO_0100096
T9 1737-1746 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T10 1891-1900 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T11 1933-1951 Disease denotes 2019-nCoV infected http://purl.obolibrary.org/obo/MONDO_0100096
T12 2514-2523 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T13 2641-2651 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T14 3108-3118 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T15 3712-3722 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T16 4251-4260 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T17 4810-4819 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T18 5040-5049 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T19 5519-5528 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T20 5629-5638 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T21 6874-6883 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T22 8001-8011 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T23 8215-8225 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T24 8317-8327 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T25 8418-8438 Disease denotes 2019-nCoV infections http://purl.obolibrary.org/obo/MONDO_0100096
T26 9085-9104 Disease denotes 2019-nCoV infection http://purl.obolibrary.org/obo/MONDO_0100096
T27 9095-9104 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T28 9518-9528 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T29 9743-9776 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T30 9778-9782 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T31 9819-9829 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T32 10339-10343 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T33 10465-10484 Disease denotes 2019-nCoV infection http://purl.obolibrary.org/obo/MONDO_0100096
T34 10475-10484 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T35 10948-10952 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T36 11122-11132 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T37 11269-11279 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T38 11319-11328 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T39 11643-11662 Disease denotes 2019-nCoV infection http://purl.obolibrary.org/obo/MONDO_0100096
T40 11653-11662 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T41 11845-11854 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T42 12024-12034 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T43 12655-12674 Disease denotes 2019-nCoV infection http://purl.obolibrary.org/obo/MONDO_0100096
T44 12665-12674 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T45 14184-14194 Disease denotes Infectious http://purl.obolibrary.org/obo/MONDO_0005550
T46 14660-14670 Disease denotes Infectious http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 336-338 http://purl.obolibrary.org/obo/CLO_0001313 denotes 36
T2 543-544 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T3 982-983 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T4 1106-1109 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T5 1304-1307 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T6 1385-1386 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T7 1981-1982 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T8 2005-2006 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T9 2040-2041 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T10 2116-2117 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T11 2379-2380 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T12 3504-3506 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T13 3806-3807 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T14 3834-3836 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T15 4840-4843 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T16 6098-6099 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T17 6477-6478 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T18 6491-6492 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T19 7218-7220 http://purl.obolibrary.org/obo/CLO_0001313 denotes 36
T20 7428-7430 http://purl.obolibrary.org/obo/CLO_0001000 denotes 35
T21 7848-7852 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T22 7856-7857 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T23 8241-8242 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T24 8779-8780 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T25 8868-8871 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T26 9111-9117 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T27 9136-9137 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T28 9669-9671 http://purl.obolibrary.org/obo/CLO_0001022 denotes Li
T29 9669-9671 http://purl.obolibrary.org/obo/CLO_0007314 denotes Li
T30 9710-9711 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T31 9789-9790 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T32 9831-9833 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T33 10046-10047 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T34 10170-10171 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T35 10710-10711 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T36 10845-10848 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T37 10976-10977 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T38 11024-11025 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T39 11045-11046 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T40 11087-11088 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T41 11151-11153 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T42 11164-11165 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T43 11300-11301 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T44 11455-11456 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T45 11809-11810 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T46 12117-12120 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T47 12929-12931 http://purl.obolibrary.org/obo/CLO_0008954 denotes SC
T48 12949-12950 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T49 12977-12984 http://purl.obolibrary.org/obo/UBERON_0000982 denotes jointly
T50 12977-12984 http://purl.obolibrary.org/obo/UBERON_0004905 denotes jointly
T51 13129-13131 http://purl.obolibrary.org/obo/CLO_0007860 denotes MR
T52 13631-13633 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T53 13744-13746 http://purl.obolibrary.org/obo/CLO_0053755 denotes ES
T54 13801-13803 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T55 13881-13883 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T56 14067-14069 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T57 14507-14509 http://purl.obolibrary.org/obo/CLO_0008954 denotes SC
T58 14535-14537 http://purl.obolibrary.org/obo/CLO_0008954 denotes SC
T59 14563-14565 http://purl.obolibrary.org/obo/CLO_0008954 denotes SC
T60 14585-14587 http://purl.obolibrary.org/obo/CLO_0008954 denotes SC
T61 14598-14605 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T62 14825-14832 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 6651-6656 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T2 9669-9671 Chemical denotes Li http://purl.obolibrary.org/obo/CHEBI_30145
T3 12922-12924 Chemical denotes SF http://purl.obolibrary.org/obo/CHEBI_71029
T4 13129-13131 Chemical denotes MR http://purl.obolibrary.org/obo/CHEBI_74698
T5 13477-13482 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T6 13744-13746 Chemical denotes ES http://purl.obolibrary.org/obo/CHEBI_73509
T7 14225-14230 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T8 14503-14505 Chemical denotes SF http://purl.obolibrary.org/obo/CHEBI_71029
T9 14544-14546 Chemical denotes SF http://purl.obolibrary.org/obo/CHEBI_71029
T10 14581-14583 Chemical denotes SF http://purl.obolibrary.org/obo/CHEBI_71029
T11 14701-14706 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T12 14746-14751 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 1152-1161 http://purl.obolibrary.org/obo/GO_0006810 denotes transport
T2 1983-1989 http://purl.obolibrary.org/obo/GO_0060361 denotes flight
T3 2099-2105 http://purl.obolibrary.org/obo/GO_0060361 denotes flight
T4 4630-4636 http://purl.obolibrary.org/obo/GO_0060361 denotes flight
T5 7565-7571 http://purl.obolibrary.org/obo/GO_0060361 denotes flight
T6 7587-7593 http://purl.obolibrary.org/obo/GO_0060361 denotes flight

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T1 0-102 Sentence denotes Effectiveness of airport screening at detecting travellers infected with novel coronavirus (2019-nCoV)
T2 104-112 Sentence denotes Abstract
T3 113-261 Sentence denotes We evaluated effectiveness of thermal passenger screening for 2019-nCoV infection at airport exit and entry to inform public health decision-making.
T4 262-335 Sentence denotes In our baseline scenario, we estimated that 46% (95% confidence interval:
T5 336-502 Sentence denotes 36 to 58) of infected travellers would not be detected, depending on incubation period, sensitivity of exit and entry screening, and proportion of asymptomatic cases.
T6 503-638 Sentence denotes Airport screening is unlikely to detect a sufficient proportion of 2019-nCoV infected travellers to avoid entry of infected travellers.
T7 640-786 Sentence denotes As at 4 February 2020, 20,471 confirmed cases of novel coronavirus (2019-nCoV) have been reported from China with 425 deaths confirmed so far [1].
T8 787-918 Sentence denotes There were cases in at least 23 other countries, identified because of symptoms and recent travel history to Hubei province, China.
T9 919-1057 Sentence denotes This strongly suggests that the reported cases constitute only a small fraction of the actual number of infected individuals in China [2].
T10 1058-1237 Sentence denotes While the most affected region, Hubei province, has ceased air travel and closed major public transport routes [3] the number of exported cases are still expected to increase [4].
T11 1238-1487 Sentence denotes Despite limited evidence for its effectiveness, airport screening has been previously implemented during the 2003 SARS epidemic and 2009 influenza A(H1N1) pandemic to limit the probability of infected cases entering other countries or regions [5-7].
T12 1488-1747 Sentence denotes Here we use the available evidence on the incubation time, hospitalisation time and proportion of asymptomatic infections of 2019-nCoV to evaluate the effectiveness of exit and entry screening for detecting travellers entering Europe with 2019-nCoV infection.
T13 1748-1847 Sentence denotes We also present an online tool so that results can be updated as new information becomes available.
T14 1849-1915 Sentence denotes Simulation of travellers at each stage of infection with 2019-nCoV
T15 1916-2053 Sentence denotes We simulated 100 2019-nCoV infected travellers planning to board a flight who would pose a risk for seeding transmission in a new region.
T16 2054-2192 Sentence denotes The duration of travel was considered as the flight time plus a small amount of additional travel time (ca 1 hour) for airport procedures.
T17 2193-2434 Sentence denotes We assumed that infected individuals will develop symptoms, including fever, at the end of their incubation period (mean 5.2 days (Table)) [8] and progress to more severe symptoms after a few days, resulting in hospitalisation and isolation.
T18 2435-2798 Sentence denotes We also took into account that individuals may have asymptomatic (subclinical) infection that would not be detected by thermal scanning or cause them to seek medical care, although these individuals may be infectious, and that infected travellers may exhibit severe symptoms during their travel and be hospitalised upon arrival without undergoing entry screening.
T19 2799-3210 Sentence denotes We then estimated the proportion of infected travellers who would be detected by exit and entry screening, develop severe symptoms during travel, or go undetected, under varying assumptions of: (i) the duration of travel; (ii) the sensitivity of exit and entry screening; (iii) the proportion of asymptomatic infections; (iv) the incubation period and (v) the time from symptom onset to hospitalisation (Table).
T20 3211-3410 Sentence denotes Table Parameter values and assumptions for the baseline scenario estimating effectiveness of exit and entry screening at airports for detecting passengers infected with novel coronavirus (2019-nCoV)
T21 3411-3455 Sentence denotes Parameter Value (baseline scenario) Source
T22 3456-3507 Sentence denotes Duration of travel 12 hours Beijing – London [18]
T23 3508-3595 Sentence denotes Sensitivity of exit screening 86% Sensitivity of infrared thermal image scanners [19]
T24 3596-3684 Sentence denotes Sensitivity of entry screening 86% Sensitivity of infrared thermal image scanners [19]
T25 3685-3837 Sentence denotes Proportion of asymptomatic infections undetectable by typical screening procedures 17% 1 of 6 reported asymptomatic in a 2019-nCoV family cluster [11]
T26 3838-3980 Sentence denotes Incubation period Mean 5.2 days, variance 4.1 days Reported Gamma distributed mean, variance estimated from uncertainty interval of mean [8]
T27 3981-4389 Sentence denotes Time from symptom onset to hospitalisation Mean 9.1 days, variance 14.7 days Reported Gamma distributed mean, variance estimated from uncertainty interval of mean [8] We assume that the time of starting travel is randomly and uniformly distributed between the time of infection and twice the expected time to severe disease, ensuring that simulated travellers are travelling during their incubation period.
T28 4390-4536 Sentence denotes However, we only consider those travellers who depart before their symptoms progress to being so severe that they would require hospital care [8].
T29 4537-4751 Sentence denotes We simulate travellers with individual incubation period, time from onset to severe disease, flight start times and detection success at exit and entry screening according to the screening sensitivities (Figure 1).
T30 4752-4980 Sentence denotes An individual will be detected at exit screening if their infection is symptomatic i.e. has detectable fever, their departure time exceeds their incubation period, and their stochastic exit screening success indicates detection.
T31 4981-5265 Sentence denotes An individual will be detected at entry screening if their infection is symptomatic, their incubation period ends after their departure but before their arrival, they have not been detected at exit screening, and their entry screening result is positive despite imperfect sensitivity.
T32 5266-5421 Sentence denotes Entry screening detections are further divided into detection due to severe symptoms and detection of mild symptoms via equipment such as thermal scanners.
T33 5422-5498 Sentence denotes We used 10,000 bootstrap samples to calculate 95% confidence intervals (CI).
T34 5499-5596 Sentence denotes Figure 1 Simulated infection histories of travellers infected with novel coronavirus (2019-nCoV)
T35 5597-5716 Sentence denotes The incubation period begins on infection and travellers then progress to being symptomatic and having severe symptoms.
T36 5717-5878 Sentence denotes Travellers may fly at any point within the incubation or symptomatic phases; any would-be travellers who show (severe) symptoms and are hospitalised before exit.
T37 5879-6011 Sentence denotes Vertical lines represent the exit screening at start of travel (solid) and entry screening at end of travel (dashed) 12 hours later.
T38 6012-6183 Sentence denotes The model code is available via GitHub [9] and the results can be further explored in a Shiny app [10] at https://cmmid-lshtm.shinyapps.io/traveller_screening/ (Figure 2).
T39 6184-6476 Sentence denotes Figure 2 Screenshot of Shiny appa displaying the number of travellers infected with novel coronavirus (2019-nCoV) detected at airport exit and entry screening with baseline assumptionsb, 95% bootstrap confidence intervals, time distributions for incubation period and time to severe disease*
T40 6477-6490 Sentence denotes a Source [9].
T41 6491-6537 Sentence denotes b Baseline assumptions according to the Table.
T42 6538-6697 Sentence denotes Results are from stochastic simulation, and so there may be small variations in the number of travellers in each group when the same parameters are used twice.
T43 6698-6884 Sentence denotes Sliders are provided to modify the duration of travel, the sensitivity of both exit and entry screening, the proportion symptomatic, and the natural history parameters for the infection.
T44 6886-6918 Sentence denotes Effect of screening on detection
T45 6919-6974 Sentence denotes For the baseline scenario we estimated that 44 (95% CI:
T46 6975-7062 Sentence denotes 33–56) of 100 infected travellers would be detected by exit screening, no case (95% CI:
T47 7063-7126 Sentence denotes 0–3) would develop severe symptoms during travel, nine (95% CI:
T48 7127-7217 Sentence denotes 2–16) additional cases would be detected by entry screening, and the remaining 46 (95% CI:
T49 7218-7247 Sentence denotes 36–58) would not be detected.
T50 7248-7358 Sentence denotes The effectiveness of entry screening is largely dependent on the effectiveness of the exit screening in place.
T51 7359-7427 Sentence denotes Under baseline assumptions, entry screening could detect 53 (95% CI:
T52 7428-7505 Sentence denotes 35–72) instead of nine infected travellers if no exit screening was in place.
T53 7506-7672 Sentence denotes However, the probability of developing symptoms during the flight increases with flight time and hence exit screening is more effective for longer flights (Figure 3).
T54 7673-7842 Sentence denotes Figure 3 Probability of detecting travellers infected with novel coronavirus (2019-nCoV) at airport entry screening by travel duration and sensitivity of exit screening
T55 7843-7891 Sentence denotes Each cell is a mean of 10,000 model simulations.
T56 7892-8056 Sentence denotes Other parameters (incubation period, symptom onset to hospitalisation period, and proportion of asymptomatic infections) were fixed at baseline assumptions (Table).
T57 8057-8149 Sentence denotes Intervals are probabilities of detection, binned at increments of 10% (0–10%, 10–20%, etc.).
T58 8150-8356 Sentence denotes Syndromic screening designed to prevent infected and potentially infectious cases entering a country undetected is highly vulnerable to the proportion of asymptomatic infections and long incubation periods.
T59 8357-8747 Sentence denotes If our baseline scenario is modified to have 0% asymptomatic 2019-nCoV infections and 100% sensitivity of entry screening, the incubation period will need to be around 10-fold shorter than the period from symptom onset to severe disease (e.g. hospitalisation) in order to detect more than 90% of infected travellers that would not otherwise report illness at either exit or entry screening.
T60 8749-8775 Sentence denotes Discussion and conclusions
T61 8776-8946 Sentence denotes As a response to the ongoing outbreak of the 2019-nCoV originating in Wuhan, exit screening has been implemented for international flights leaving China’s major airports.
T62 8947-9144 Sentence denotes Thermal scanning, which can identify passengers with fever (high external body temperature), allows for passengers exhibiting symptoms of 2019-nCoV infection to be tested before they board a plane.
T63 9145-9296 Sentence denotes Similarly, entry screening for flights originating in the most affected regions may be under consideration at airports in regions in and outside China.
T64 9297-9643 Sentence denotes We estimate that the key goal of syndromic screening at airports - to prevent infected travellers from entering countries or regions with little or no ongoing transmission - is only achievable if the rate of asymptomatic infections that are transmissible is negligible, screening sensitivity is almost perfect, and the incubation period is short.
T65 9644-9835 Sentence denotes Based on early data from Li et al. [8], 2019-nCoV appears to have a shorter incubation period than severe acute respiratory syndrome (SARS), and a higher rate of asymptomatic infections [11].
T66 9836-9958 Sentence denotes Under generally conservative assumptions on sensitivity, we find that 46 of 100 infected travellers will enter undetected.
T67 9959-10066 Sentence denotes Entry screening is an intuitive barrier for the prevention of infected people entering a country or region.
T68 10067-10251 Sentence denotes However, evidence on its effectiveness remains limited and given its lack of specificity, it generates a high overhead of screened travellers uninfected with the targeted pathogen [5].
T69 10252-10444 Sentence denotes For example, when entry screening was implemented in Australia in response to the 2003 SARS outbreak, 1.84 million people were screened, 794 were quarantined, and no cases were confirmed [12].
T70 10445-10653 Sentence denotes While some cases of 2019-nCoV infection have been identified through airport screening in the current outbreak, our estimates indicate that likely more infected travellers have not been detected by screening.
T71 10654-10823 Sentence denotes It is important to note that our estimates are based on a number of key assumptions that cannot yet be informed directly by evidence from the ongoing 2019-nCoV outbreak.
T72 10824-10953 Sentence denotes The current outbreak has spread rapidly and early evidence suggests that the average disease severity is lower than that of SARS.
T73 10954-11023 Sentence denotes This may also suggest a substantial proportion of asymptomatic cases.
T74 11024-11228 Sentence denotes A recent analysis of a family transmission cluster is based on a small sample size but one in six infections was asymptomatic [11]; this is a major impediment for the effectiveness of syndromic screening.
T75 11229-11347 Sentence denotes However, if asymptomatic cases were not infectious they would not pose a risk for seeding infection chains on arrival.
T76 11348-11554 Sentence denotes To allow easy adaptation of our results as new insight becomes available in the coming weeks, we developed a free interactive online tool, available at https://cmmid-lshtm.shinyapps.io/traveller_screening/.
T77 11555-11771 Sentence denotes While the most up-to-date data on the incubation period or the time until recovery from 2019-nCoV infection have been used in this analysis, these figures are likely to change over time as more data become available.
T78 11772-12035 Sentence denotes Unless the incubation period is only a small fraction of the duration of infection in relation to that of symptomatic disease, and fever in particular, syndromic screening is likely to detect an insufficient fraction of infected cases to prevent local infections.
T79 12036-12140 Sentence denotes In addition, the sensitivity of airport screening for the detection of 2019-nCoV has not been evaluated.
T80 12141-12285 Sentence denotes However, we chose conservative estimates and show that with reduced sensitivity, the effectiveness of syndromic screening would further decline.
T81 12286-12451 Sentence denotes In many international airports, information is provided to travellers from affected regions recommending action if they develop symptoms on or after arrival [13-16].
T82 12452-12606 Sentence denotes Some countries, for example Japan, also require incoming passengers to complete forms detailing their past and future travel in order to aid tracing [17].
T83 12607-12903 Sentence denotes Due to the duration of the incubation period of 2019-nCoV infection, we find that exit or entry screening at airports for initial symptoms, via thermal scanners or similar, is unlikely to prevent passage of infected travellers into new countries or regions where they may seed local transmission.
T84 12905-12921 Sentence denotes Acknowledgements
T85 12922-13065 Sentence denotes SF and SC are supported by a Sir Henry Dale Fellowship jointly funded by the Wellcome Trust and the Royal Society (Grant number 208812/Z/17/Z).
T86 13066-13143 Sentence denotes RME acknowledges an HDR UK Innovation Fellowship (Grant number MR/S003975/1).
T87 13144-13295 Sentence denotes BJQ was funded by the National Institute for Health Research (NIHR) (16/137/109) using UK aid from the UK Government to support global health research.
T88 13296-13457 Sentence denotes The views expressed in this publication are those of the author(s) and not necessarily those of the NHS, the NIHR or the UK Department of Health and Social Care.
T89 13458-13502 Sentence denotes CMMID nCoV working group funding statements:
T90 13503-14074 Sentence denotes Yang Liu (Gates (INV-003174), NIHR (16/137/109)), Charlie Diamond (NIHR (16/137/109)), Sebastian Funk (Wellcome Trust (210758/Z/18/Z)), Amy Gimma (Global Challenges Research Fund (GCRF) for the project "RECAP" managed through RCUK and ESRC (ES/P010873/1)), James D Munday (Wellcome Trust (210758/Z/18/Z)), Hamish Gibbs (NIHR (ITCRZ 03010)), Sam Abbott (Wellcome Trust (210758/Z/18/Z)), Timothy W Russell (Wellcome Trust (206250/Z/17/Z)), Petra Klepac (Gates (INV-003174)), Mark Jit (Gates (INV-003174), NIHR (16/137/109)), Joel Hellewell (Wellcome Trust (210758/Z/18/Z)).
T91 14076-14084 Sentence denotes *Erratum
T92 14085-14126 Sentence denotes Figure 2 was replaced on 7 February 2020.
T93 14128-14230 Sentence denotes Members of the Centre for the Mathematical Modelling of Infectious Diseases (CMMID) nCoV working group
T94 14231-14416 Sentence denotes Yang Liu, Charlie Diamond, W John Edmunds, Sebastian Funk, Amy Gimma, James D Munday, Hamish Gibbs, Nikos I Bosse, Sam Abbott, Timothy W Russell, Petra Klepac, Mark Jit, Joel Hellewell.
T95 14418-14439 Sentence denotes Conflict of interest:
T96 14440-14454 Sentence denotes None declared.
T97 14455-14478 Sentence denotes Authors’ contributions:
T98 14479-14707 Sentence denotes Conceptualisation: BJQ, SF, SC, RME; model formulation: SC, BJQ, SF; analysis: BJQ, SC; writing: RME, SF, SC, BJQ; app testing: RME and the Centre for the Mathematical Modelling of Infectious Diseases (CMMID) nCoV working group.
T99 14708-14919 Sentence denotes The members of the CMMID nCoV working group contributed equally in processing, data cleaning, interpreting findings, testing the interactive tool, reviewing the manuscript and approving the work for publication.
T100 14920-14952 Sentence denotes The order was assigned randomly.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 2263-2268 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T2 4855-4860 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T3 9000-9005 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T4 11903-11908 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945

2_test

Id Subject Object Predicate Lexical cue
32046816-31995857-29321262 2333-2334 31995857 denotes 8
32046816-21245928-29321263 3592-3594 21245928 denotes 19
32046816-21245928-29321264 3681-3683 21245928 denotes 19
32046816-31986261-29321265 3834-3836 31986261 denotes 11
32046816-31995857-29321266 3978-3979 31995857 denotes 8
32046816-31995857-29321267 4147-4148 31995857 denotes 8
32046816-31995857-29321268 4533-4534 31995857 denotes 8
32046816-31995857-29321269 9680-9681 31995857 denotes 8
32046816-31986261-29321270 9831-9833 31986261 denotes 11
32046816-25695520-29321271 10248-10249 25695520 denotes 5
32046816-14984341-29321272 10440-10442 14984341 denotes 12
32046816-31986261-29321273 11151-11153 31986261 denotes 11
32046816-15650436-29321274 12444-12446 15650436 denotes 13

MyTest

Id Subject Object Predicate Lexical cue
32046816-31995857-29321262 2333-2334 31995857 denotes 8
32046816-21245928-29321263 3592-3594 21245928 denotes 19
32046816-21245928-29321264 3681-3683 21245928 denotes 19
32046816-31986261-29321265 3834-3836 31986261 denotes 11
32046816-31995857-29321266 3978-3979 31995857 denotes 8
32046816-31995857-29321267 4147-4148 31995857 denotes 8
32046816-31995857-29321268 4533-4534 31995857 denotes 8
32046816-31995857-29321269 9680-9681 31995857 denotes 8
32046816-31986261-29321270 9831-9833 31986261 denotes 11
32046816-25695520-29321271 10248-10249 25695520 denotes 5
32046816-14984341-29321272 10440-10442 14984341 denotes 12
32046816-31986261-29321273 11151-11153 31986261 denotes 11
32046816-15650436-29321274 12444-12446 15650436 denotes 13