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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
2 108-130 Species denotes 2019 novel coronavirus Tax:2697049
3 132-141 Species denotes 2019-nCoV Tax:2697049
5 444-453 Species denotes 2019-nCoV Tax:2697049
14 773-781 Species denotes patients Tax:9606
15 1107-1129 Species denotes 2019 novel coronavirus Tax:2697049
16 1131-1140 Species denotes 2019-nCoV Tax:2697049
17 1176-1185 Species denotes 2019-nCoV Tax:2697049
18 1352-1361 Species denotes 2019-nCoV Tax:2697049
19 787-796 Disease denotes pneumonia MESH:D011014
20 1077-1086 Disease denotes pneumonia MESH:D011014
21 1460-1469 Disease denotes infection MESH:D007239
27 1881-1890 Species denotes 2019-nCoV Tax:2697049
28 2000-2009 Species denotes 2019-nCoV Tax:2697049
29 2179-2184 Species denotes human Tax:9606
30 2201-2210 Species denotes 2019-nCoV Tax:2697049
31 2185-2195 Disease denotes infections MESH:D007239
36 2378-2387 Species denotes 2019-nCoV Tax:2697049
37 2591-2600 Species denotes 2019-nCoV Tax:2697049
38 2622-2631 Species denotes 2019-nCoV Tax:2697049
39 2819-2828 Species denotes 2019-nCoV Tax:2697049
58 3781-3790 Species denotes 2019-nCoV Tax:2697049
59 3878-3885 Species denotes persons Tax:9606
60 3996-4005 Species denotes 2019-nCoV Tax:2697049
61 4055-4107 Species denotes severe acute respiratory syndrome (SARS) coronavirus Tax:694009
62 4191-4195 Species denotes H1N1 Tax:114727
63 4196-4211 Species denotes influenza virus Tax:11309
64 4317-4333 Species denotes SARS coronavirus Tax:694009
65 4474-4478 Species denotes H1N1 Tax:114727
66 4479-4494 Species denotes influenza virus Tax:11309
67 4641-4650 Species denotes 2019-nCoV Tax:2697049
68 4809-4818 Species denotes 2019-nCoV Tax:2697049
69 4864-4868 Species denotes H1N1 Tax:114727
70 4869-4884 Species denotes influenza virus Tax:11309
71 5031-5040 Species denotes 2019-nCoV Tax:2697049
72 5067-5083 Species denotes SARS coronavirus Tax:694009
73 5166-5175 Species denotes 2019-nCoV Tax:2697049
74 3869-3877 Disease denotes infected MESH:D007239
75 5279-5288 Disease denotes infection MESH:D007239
79 6118-6123 Species denotes human Tax:9606
80 6127-6132 Species denotes human Tax:9606
81 6378-6387 Species denotes 2019-nCoV Tax:2697049
84 6612-6621 Species denotes 2019-nCoV Tax:2697049
85 6748-6757 Species denotes 2019-nCoV Tax:2697049
153 8087-8120 Disease denotes 2019 novel coronavirus infections MESH:C000657245
155 8330-8339 Disease denotes infection MESH:D007239
157 8192-8224 Disease denotes 2019 novel coronavirus infection MESH:C000657245
159 10049-10052 Gene denotes Crl Gene:133396

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 787-796 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T2 1077-1086 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T3 1460-1469 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T4 2185-2195 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T5 2460-2470 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T6 3687-3697 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T7 4055-4088 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T8 4090-4094 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T9 4191-4205 Disease denotes H1N1 influenza http://purl.obolibrary.org/obo/MONDO_0005460
T10 4196-4205 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T11 4317-4321 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T12 4474-4488 Disease denotes H1N1 influenza http://purl.obolibrary.org/obo/MONDO_0005460
T13 4479-4488 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T14 4864-4878 Disease denotes H1N1 influenza http://purl.obolibrary.org/obo/MONDO_0005460
T15 4869-4878 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T16 5067-5071 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T17 5279-5288 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T18 6584-6587 Disease denotes BCC http://purl.obolibrary.org/obo/MONDO_0005341
T19 6644-6647 Disease denotes BCC http://purl.obolibrary.org/obo/MONDO_0005341
T20 6666-6669 Disease denotes BCC http://purl.obolibrary.org/obo/MONDO_0005341
T21 6702-6705 Disease denotes BCC http://purl.obolibrary.org/obo/MONDO_0005341
T22 6739-6742 Disease denotes BCC http://purl.obolibrary.org/obo/MONDO_0005341
T23 7270-7280 Disease denotes Infectious http://purl.obolibrary.org/obo/MONDO_0005550
T24 8087-8123 Disease denotes 2019 novel coronavirus infections in http://purl.obolibrary.org/obo/MONDO_0100096
T25 8192-8224 Disease denotes 2019 novel coronavirus infection http://purl.obolibrary.org/obo/MONDO_0100096
T26 8215-8224 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T27 8330-8339 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T28 9169-9179 Disease denotes Infectious http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 93-103 http://purl.obolibrary.org/obo/BFO_0000030 denotes OBJECTIVES
T2 188-189 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T3 984-985 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T4 992-996 http://purl.obolibrary.org/obo/NCBITaxon_117565 denotes fish
T5 1001-1007 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animal
T6 1105-1106 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T7 1143-1149 http://purl.obolibrary.org/obo/CLO_0001757 denotes 1]. At
T8 1362-1365 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T9 1506-1509 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T10 1555-1556 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T11 1634-1636 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T12 2110-2111 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T13 2179-2184 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T14 2650-2654 http://purl.obolibrary.org/obo/CLO_0008416 denotes peer
T15 2650-2654 http://purl.obolibrary.org/obo/CLO_0050081 denotes peer
T16 3065-3066 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T17 3309-3310 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T18 3851-3852 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T19 4189-4190 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T20 4206-4211 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T21 4344-4345 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T22 4472-4473 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T23 4489-4494 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T24 4662-4663 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T25 4862-4863 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T26 4879-4884 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T27 5384-5385 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T28 5763-5764 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T29 6037-6038 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T30 6088-6089 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T31 6108-6109 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T32 6118-6123 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T33 6127-6132 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T34 6589-6591 http://purl.obolibrary.org/obo/CLO_0009126 denotes SR
T35 6649-6651 http://purl.obolibrary.org/obo/CLO_0009126 denotes SR
T36 6671-6673 http://purl.obolibrary.org/obo/CLO_0009126 denotes SR
T37 6707-6709 http://purl.obolibrary.org/obo/CLO_0009126 denotes SR
T38 6763-6765 http://purl.obolibrary.org/obo/CLO_0009126 denotes SR
T39 6768-6769 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T40 7757-7760 http://purl.obolibrary.org/obo/CLO_0002421 denotes Cho
T41 7757-7760 http://purl.obolibrary.org/obo/CLO_0052479 denotes Cho
T42 7757-7760 http://purl.obolibrary.org/obo/CLO_0052480 denotes Cho
T43 7757-7760 http://purl.obolibrary.org/obo/CLO_0052483 denotes Cho
T44 7757-7760 http://purl.obolibrary.org/obo/CLO_0052484 denotes Cho
T45 7757-7760 http://purl.obolibrary.org/obo/CLO_0052485 denotes Cho
T46 8363-8365 http://purl.obolibrary.org/obo/CLO_0001000 denotes 35
T47 8367-8373 http://purl.obolibrary.org/obo/UBERON_0003100 denotes Female
T48 8419-8423 http://purl.obolibrary.org/obo/UBERON_0003101 denotes Male
T49 8419-8423 http://www.ebi.ac.uk/efo/EFO_0000970 denotes Male
T50 8437-8439 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T51 8468-8472 http://purl.obolibrary.org/obo/UBERON_0003101 denotes Male
T52 8468-8472 http://www.ebi.ac.uk/efo/EFO_0000970 denotes Male
T53 8510-8515 http://purl.obolibrary.org/obo/CLO_0001375 denotes 4 55
T54 8517-8521 http://purl.obolibrary.org/obo/UBERON_0003101 denotes Male
T55 8517-8521 http://www.ebi.ac.uk/efo/EFO_0000970 denotes Male
T56 8566-8570 http://purl.obolibrary.org/obo/UBERON_0003101 denotes Male
T57 8566-8570 http://www.ebi.ac.uk/efo/EFO_0000970 denotes Male
T58 8615-8619 http://purl.obolibrary.org/obo/UBERON_0003101 denotes Male
T59 8615-8619 http://www.ebi.ac.uk/efo/EFO_0000970 denotes Male
T60 8648-8652 http://purl.obolibrary.org/obo/UBERON_0003101 denotes Male
T61 8648-8652 http://www.ebi.ac.uk/efo/EFO_0000970 denotes Male
T62 8690-8695 http://purl.obolibrary.org/obo/CLO_0050053 denotes 8 62
T63 8697-8703 http://purl.obolibrary.org/obo/UBERON_0003100 denotes Female
T64 8748-8754 http://purl.obolibrary.org/obo/UBERON_0003100 denotes Female
T65 8784-8790 http://purl.obolibrary.org/obo/UBERON_0003100 denotes Female
T66 8812-8818 http://purl.obolibrary.org/obo/CLO_0053003 denotes 11 25
T67 8820-8824 http://purl.obolibrary.org/obo/UBERON_0003101 denotes Male
T68 8820-8824 http://www.ebi.ac.uk/efo/EFO_0000970 denotes Male
T69 8850-8852 http://purl.obolibrary.org/obo/CLO_0001382 denotes 48
T70 8854-8858 http://purl.obolibrary.org/obo/UBERON_0003101 denotes Male
T71 8854-8858 http://www.ebi.ac.uk/efo/EFO_0000970 denotes Male
T72 8905-8909 http://purl.obolibrary.org/obo/UBERON_0003101 denotes Male
T73 8905-8909 http://www.ebi.ac.uk/efo/EFO_0000970 denotes Male
T74 8955-8961 http://purl.obolibrary.org/obo/UBERON_0003100 denotes Female
T75 8993-8997 http://purl.obolibrary.org/obo/UBERON_0003101 denotes Male
T76 8993-8997 http://www.ebi.ac.uk/efo/EFO_0000970 denotes Male
T77 9323-9325 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T78 9423-9425 http://purl.obolibrary.org/obo/CLO_0053794 denotes 41
T79 9454-9455 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T80 9664-9666 http://purl.obolibrary.org/obo/CLO_0001022 denotes Li
T81 9664-9666 http://purl.obolibrary.org/obo/CLO_0007314 denotes Li
T82 9719-9721 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T83 9931-9933 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 2632-2635 Chemical denotes TFT http://purl.obolibrary.org/obo/CHEBI_140318
T2 6622-6625 Chemical denotes TFT http://purl.obolibrary.org/obo/CHEBI_140318
T3 6758-6761 Chemical denotes TFT http://purl.obolibrary.org/obo/CHEBI_140318
T4 6812-6815 Chemical denotes TFT http://purl.obolibrary.org/obo/CHEBI_140318
T5 7582-7584 Chemical denotes Ko http://purl.obolibrary.org/obo/CHEBI_59348
T6 9360-9362 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T7 9364-9366 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T8 9368-9370 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T9 9372-9374 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T10 9376-9378 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T11 9501-9503 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T12 9505-9507 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T13 9509-9511 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T14 9513-9515 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T15 9517-9519 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T16 9521-9523 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T17 9635-9637 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T18 9639-9641 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T19 9643-9645 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T20 9647-9649 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T21 9651-9653 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T22 9655-9657 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T23 9664-9666 Chemical denotes Li http://purl.obolibrary.org/obo/CHEBI_30145
T24 9802-9804 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T25 9831-9833 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T26 9835-9837 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T27 9897-9899 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T28 9901-9903 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T29 9905-9907 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T30 9909-9911 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T31 9913-9915 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T32 9917-9919 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T33 9980-9982 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T34 9984-9986 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T35 9988-9990 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T36 10017-10019 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T37 10021-10023 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T38 10073-10075 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 6362-6374 http://purl.obolibrary.org/obo/GO_0009405 denotes pathogenesis

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T1 0-82 Sentence denotes An interim review of the epidemiological characteristics of 2019 novel coronavirus
T2 84-92 Sentence denotes Abstract
T3 93-103 Sentence denotes OBJECTIVES
T4 104-232 Sentence denotes The 2019 novel coronavirus (2019-nCoV) from Wuhan, China is currently recognized as a public health emergency of global concern.
T5 234-241 Sentence denotes METHODS
T6 242-387 Sentence denotes We reviewed the currently available literature to provide up-to-date guidance on control measures to be implemented by public health authorities.
T7 389-396 Sentence denotes RESULTS
T8 397-475 Sentence denotes Some of the epidemiological characteristics of 2019-nCoV have been identified.
T9 476-626 Sentence denotes However, there remain considerable uncertainties, which should be considered when providing guidance to public health authorities on control measures.
T10 628-639 Sentence denotes CONCLUSIONS
T11 640-738 Sentence denotes Additional studies incorporating more detailed information from confirmed cases would be valuable.
T12 740-752 Sentence denotes INTRODUCTION
T13 753-1021 Sentence denotes Several clusters of patients with pneumonia of unknown etiology in Wuhan, Hubei Province, China were reported to the Chinese health authorities starting on December 8, 2019, and most of these cases were epidemiologically linked to a local fish and animal market [1,2].
T14 1022-1146 Sentence denotes The pathogenic agent responsible for these clusters of pneumonia was identified as a 2019 novel coronavirus (2019-nCoV) [1].
T15 1147-1309 Sentence denotes At the very beginning of the 2019-nCoV outbreak in China, much remained unknown, except for the fact that it was transmitted by direct exposure at the market [3].
T16 1310-1474 Sentence denotes However, person-to-person transmission of 2019-nCoV has been confirmed [4], and asymptomatic individuals have been identified as potential sources of infection [5].
T17 1475-1658 Sentence denotes The number of identified cases has been steadily growing, and as of February 3, a total of 14,557 cases had been reported globally (14,411 in China and 146 in 22 other countries) [6].
T18 1659-1836 Sentence denotes Since the first laboratory-confirmed case was identified on January 20, 2020 in Korea, the number of reported cases grew to 15 as of February 3, 2020 (Figure 1 and Table 1) [7].
T19 1837-2090 Sentence denotes There remain considerable knowledge gaps on 2019-nCoV; therefore, the public health authorities in countries with any likelihood of experiencing imported cases of 2019-nCoV should update the case definition to reflect newly updated epidemiological data.
T20 2091-2270 Sentence denotes Herein, we present a review of the literature on the epidemiological characteristics of human infections with 2019-nCoV to provide an interim summary to public health authorities.
T21 2272-2293 Sentence denotes MATERIALS AND METHODS
T22 2294-2555 Sentence denotes We searched the literature for studies reporting epidemiological characteristics of 2019-nCoV, including the reproductive number, incubation period, serial interval, infectious period, generation time, latent period, and the fatality rate of hospitalized cases.
T23 2556-2725 Sentence denotes The Korean Society of Epidemiology 2019-nCoV Task Force Team (KSE 2019-nCoV TFT) searched for peer-reviewed articles published from December 8, 2019 to February 1, 2020.
T24 2726-2829 Sentence denotes Articles were eligible for inclusion if they reported any epidemiological characteristics of 2019-nCoV.
T25 2831-2847 Sentence denotes Ethics statement
T26 2848-2910 Sentence denotes The ethical approval or individual consent was not applicable.
T27 2912-2919 Sentence denotes RESULTS
T28 2920-2997 Sentence denotes Six articles were identified and included in this review (Table 2) [2,8-12] .
T29 2998-3064 Sentence denotes Four relevant studies estimated the reproductive number [8,10-12].
T30 3065-3202 Sentence denotes A study of confirmed cases from Wuhan, China estimated the reproductive number to be 1.9 (95% confidence interval [CI], 1.3 to 3.2) [10].
T31 3203-3308 Sentence denotes Three other studies estimated the mean reproductive number as 0.3, 2.2, and 2.68, respectively [8,11,12].
T32 3309-3461 Sentence denotes A study reported the mean incubation period to be 6.1 days (95% CI, 3.8 to 9.7), and the mean serial interval to be 7.7 days (95% CI, 4.9 to 13.0) [10].
T33 3462-3551 Sentence denotes Two studies predicted the mean doubling time to be between 6.4 days and 8.7 days [10,11].
T34 3552-3634 Sentence denotes Three studies estimated the fatality rate of hospitalized cases as 14-15% [2,8,9].
T35 3635-3717 Sentence denotes We could not identify any studies that reported the infectious and latent periods.
T36 3719-3729 Sentence denotes DISCUSSION
T37 3730-3791 Sentence denotes We reviewed the epidemiological characteristics of 2019-nCoV.
T38 3792-4261 Sentence denotes The estimated reproductive number of 0.3 was obtained from a small number of infected persons with imperfect information in the very early stages of the outbreak [8]; therefore the reproductive number of 2019-nCoV is likely to be similar to that of the 2002/2003 severe acute respiratory syndrome (SARS) coronavirus during the pre-intervention period (range, 2 to 3) and that of the 2009 pandemic A/H1N1 influenza virus in the United States (range, 1.3 to 1.7) [13-15].
T39 4262-4414 Sentence denotes The incubation period is likely similar to that of the SARS coronavirus, but with a wider confidence interval (mean, 4.8 days; 95% CI, 4.2 to 5.5) [16].
T40 4415-4557 Sentence denotes Furthermore, it is longer than that of the 2009 pandemic A/H1N1 influenza virus (median incubation period, 1.4 days; 95% CI, 1.0 to 1.8) [17].
T41 4558-4765 Sentence denotes Therefore, the evidence reviewed above shows that the current control measures for 2019-nCoV, including a quarantine and observation period of 14 days for suspected cases, can be considered appropriate [10].
T42 4766-4993 Sentence denotes The generation time and serial interval of 2019-nCoV are longer than those of the 2009 pandemic A/H1N1 influenza virus (median generation time, 2.7 days; 95% CI, 2.0 to 3.5; and mean serial interval: range, 2.6 to 3.2) [14,18].
T43 4994-5131 Sentence denotes However, the mean serial interval of 2019-nCoV is similar to that of the SARS coronavirus (mean, 8.4 days; standard deviation, 3.8) [19].
T44 5132-5330 Sentence denotes The overall case fatality rate of 2019-nCoV was estimated by international experts to range from 3% to 14% [15,20], and it is more likely to cause infection in older age groups with commodities [2].
T45 5331-5464 Sentence denotes Epidemiological parameters are usually obtained from a consecutive timeline of the number of reported cases and contact-tracing data.
T46 5465-5667 Sentence denotes However, most of the studies included in our review made estimates using data obtained from the early stages of the outbreak in Wuhan, in which the reporting of confirmed cases may have been incomplete.
T47 5668-5804 Sentence denotes Furthermore, differences in the simulation methodology used in various scenarios may result in a wide spectrum of estimated values [21].
T48 5805-5875 Sentence denotes Therefore, caution is needed when interpreting these reported results.
T49 5876-5969 Sentence denotes The number of confirmed cases is increasing in China and in other countries, including Korea.
T50 5970-6075 Sentence denotes Furthermore, the likelihood of local transmission is increasing as a result of cases entering from China.
T51 6076-6459 Sentence denotes In light of a report describing a case of human-to-human transmission in the asymptomatic period [5], it is necessary to consider updating the case definition for surveillance; however, more detailed studies presenting evidence on the epidemiological nature, clinical presentation, and pathogenesis of 2019-nCoV are necessary to provide information for public health decision-making.
T52 6461-6529 Sentence denotes The authors have no conflicts of interest to declare for this study.
T53 6530-6537 Sentence denotes FUNDING
T54 6538-6543 Sentence denotes None.
T55 6544-6564 Sentence denotes AUTHOR CONTRIBUTIONS
T56 6565-6592 Sentence denotes Conceptualization: BCC, SR.
T57 6593-6626 Sentence denotes Data curation: KSE 2019-nCoV TFT.
T58 6627-6652 Sentence denotes Formal analysis: BCC, SR.
T59 6653-6674 Sentence denotes Methodology: BCC, SR.
T60 6675-6710 Sentence denotes Writing - original draft : BCC, SR.
T61 6711-6766 Sentence denotes Writing - review & editing: BCC, KSE 2019-nCoV TFT, SR.
T62 6768-6841 Sentence denotes A full list of the members of KSE 2019-nCoV TFT (alphabetically ordered):
T63 6842-7944 Sentence denotes Byung Chul Chun (Department of Preventive Medicine, Korea University College of Medicine, Seoul); Dong Hyun Kim (Department of Social and Preventive Medicine, Hallym University College of Medicine, Chuncheon); Hae-Kwan Cheong (Sungkyunkwan University School of Medicine, Suwon); Heeyoung Lee (Center for Preventive Medicine and Public Health, Seoul National University Bundang Hosptial, Seongnam); Hyunjin Son (Busan Center for Infectious Disease Control and Prevention, Busan National University Hospital); Ji-Hyuk Park (Department of Preventive Medicine, Dongguk University, Gyeongju), Jong-Hun Kim (Sungkyunkwan University School of Medicine, Suwon); Kwan Lee (Department of Preventive Medicine, Dongguk University, Gyeongju); Kwang-Pil Ko (Department of Preventive Medicine, Gachon University, College of Medicine, Incheon); Sukhyun Ryu (Department of Preventive Medicine, Konyang University, Daejeon); Sung-il Cho (Graduate School of Public Health, Seoul National University, Seoul); Young June Choe (Department of Social and Preventive Medicine, Hallym University College of Medicine, Chuncheon).
T64 7946-7969 Sentence denotes SUPPLEMENTARY MATERIALS
T65 7970-8024 Sentence denotes Korean version is available at http://www.e-epih.org/.
T66 8026-8035 Sentence denotes Figure 1.
T67 8037-8154 Sentence denotes Timeline of individuals with laboratory-confirmed 2019 novel coronavirus infections in Korea, as of February 3, 2020.
T68 8155-8163 Sentence denotes Table 1.
T69 8165-8257 Sentence denotes List of confirmed cases of 2019 novel coronavirus infection in Korea, as of February 3, 2020
T70 8258-8266 Sentence denotes Case No.
T71 8268-8358 Sentence denotes Age (yr) Sex Nationality Date of entry to Korea Suspected infection of place or origin
T72 8359-8410 Sentence denotes #1 35 Female Chinese Jan 19, 2020 Wuhan, China
T73 8411-8459 Sentence denotes #2 55 Male Korean Jan 22, 2020 Wuhan, China
T74 8460-8508 Sentence denotes #3 54 Male Korean Jan 20, 2020 Wuhan, China
T75 8509-8557 Sentence denotes #4 55 Male Korean Jan 20, 2020 Wuhan, China
T76 8558-8587 Sentence denotes #5 33 Male Korean Jan 24.
T77 8588-8606 Sentence denotes 2020 Wuhan, China
T78 8607-8639 Sentence denotes #6 55 Male Korean - Case #3
T79 8640-8688 Sentence denotes #7 28 Male Korean Jan 23, 2020 Wuhan, China
T80 8689-8739 Sentence denotes #8 62 Female Korean Jan 23, 2020 Wuhan, China
T81 8740-8774 Sentence denotes #9 28 Female Korean - Case #5
T82 8775-8810 Sentence denotes #10 54 Female Korean - Case #6
T83 8811-8844 Sentence denotes #11 25 Male Korean - Case #6
T84 8845-8895 Sentence denotes #12 48 Male Chinese Jan 19, 2020 Osaka, Japan
T85 8896-8945 Sentence denotes #13 28 Male Korean Jan 31, 2020 Wuhan, China
T86 8946-8983 Sentence denotes #14 40 Female Chinese - Case #12
T87 8984-9033 Sentence denotes #15 43 Male Korean Jan 20, 2020 Wuhan, China
T88 9034-9042 Sentence denotes Table 2.
T89 9044-9084 Sentence denotes Summary of reviews included in the study
T90 9085-9264 Sentence denotes Study Study setting Reproductive (n) Incubation period (d) Serial interval (d) Infectious period Doubling time (d) Latent period Fatality rate among hospitalized cases (%)
T91 9265-9346 Sentence denotes Wu et al. [8] Publicly-available data in China as at Jan 22, 2020 0.30 (95% CI:
T92 9347-9393 Sentence denotes 0.17, 0.44) NA NA NA NA NA 14.0 (95% CI:
T93 9394-9404 Sentence denotes 3.9, 32.0)
T94 9405-9529 Sentence denotes Huang et al. [9] 41 confirmed cases admitted to a designated hospital in Wuhan by Jan 2, 2020 NA NA NA NA NA NA 15.0
T95 9530-9663 Sentence denotes Chen et al. [2] 99 confirmed cases admitted in Wuhan Jinyintan Hosptial between Jan 1 and Jan 20, 2020 NA NA NA NA NA NA 14.6
T96 9664-9741 Sentence denotes Li et al. [10] 425 confirmed cases in Wuhan as at Jan 22, 2020 1.9 (95% CI:
T97 9742-9765 Sentence denotes 1.3, 3.2) 6.1 (95% CI:
T98 9766-9789 Sentence denotes 3.8, 9.7) 7.7 (95% CI:
T99 9790-9818 Sentence denotes 4.9, 13.0) NA 8.7 (95% CI:
T100 9819-9837 Sentence denotes 4.8, 17.0) NA NA
T101 9838-9885 Sentence denotes Riou et al. [12] Modelling study 2.2 (90% CI:
T102 9886-9919 Sentence denotes 1.4, 3.8) NA NA NA NA NA NA
T103 9920-9966 Sentence denotes Wu et al. [11] Modeling study 2.68 (95% CrI:
T104 9967-10005 Sentence denotes 2.47, 2.86) NA NA NA 6.4 (95% CrI:
T105 10006-10023 Sentence denotes 5.8, 7.1) NA NA
T106 10024-10091 Sentence denotes CI, confidence interval; Crl, credible interval; NA, not available.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 787-796 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T2 1077-1086 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090

MyTest

Id Subject Object Predicate Lexical cue
32023775-31986259-28529418 1306-1307 31986259 denotes 3
32023775-15353409-28529419 4254-4256 15353409 denotes 13
32023775-19745114-28529419 4254-4256 19745114 denotes 13
32023775-15503397-28529420 4410-4412 15503397 denotes 16
32023775-20042754-28529421 4553-4555 20042754 denotes 17
32023775-19745114-28529422 4986-4988 19745114 denotes 14
32023775-19744314-28529423 4989-4991 19744314 denotes 18
32023775-12766207-28529424 5127-5129 12766207 denotes 19
32023775-25843390-28529425 5800-5802 25843390 denotes 21

2_test

Id Subject Object Predicate Lexical cue
32023775-31986259-28529418 1306-1307 31986259 denotes 3
32023775-15353409-28529419 4254-4256 15353409 denotes 13
32023775-19745114-28529419 4254-4256 19745114 denotes 13
32023775-15503397-28529420 4410-4412 15503397 denotes 16
32023775-20042754-28529421 4553-4555 20042754 denotes 17
32023775-19745114-28529422 4986-4988 19745114 denotes 14
32023775-19744314-28529423 4989-4991 19744314 denotes 18
32023775-12766207-28529424 5127-5129 12766207 denotes 19
32023775-25843390-28529425 5800-5802 25843390 denotes 21