> top > docs > PMC:7008072 > spans > 98-5864 > annotations

PMC:7008072 / 98-5864 JSONTXT

Annnotations TAB JSON ListView MergeView

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T81 60-71 NCBITaxon:11118 denotes coronavirus
T80 78-87 SP_7 denotes 2019-nCoV
T79 183-188 SP_6;NCBITaxon:9606 denotes human
T78 334-345 UBERON:0001004 denotes respiratory
T77 359-368 SP_7 denotes 2019-nCoV
T76 445-449 CHEBI:32588;CHEBI:32588 denotes KCDC
T75 486-490 CHEBI:32588;CHEBI:32588 denotes KCDC
T74 558-565 NCBITaxon:1 denotes persons
T73 936-941 UBERON:0000170 denotes lungs
T72 1045-1054 SP_7 denotes 2019-nCoV
T71 1265-1274 SP_7 denotes 2019-nCoV
T70 1338-1342 SP_10 denotes SARS
T69 1667-1676 SP_7 denotes 2019-nCoV
T68 2006-2010 UBERON:0000104 denotes life
T67 2064-2073 SP_7 denotes 2019-nCoV
T66 2470-2475 NCBITaxon:10239 denotes virus
T65 3071-3077 NCBITaxon:9606 denotes people
T64 3773-3779 NCBITaxon:9606 denotes people
T63 3938-3943 NCBITaxon:10239 denotes virus
T62 3966-3971 NCBITaxon:10239 denotes viral
T61 4311-4320 SP_7 denotes 2019-nCoV
T60 4391-4397 GO:0016265 denotes deaths
T59 4574-4580 GO:0016265 denotes deaths
T58 4728-4733 NCBITaxon:10239 denotes virus
T57 4886-4891 SP_6;NCBITaxon:9606 denotes human
T56 5137-5146 SP_7 denotes 2019-nCoV
T55 5760-5765 NCBITaxon:10239 denotes virus

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 936-941 Body_part denotes lungs http://purl.org/sig/ont/fma/fma68877

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 321-330 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T2 334-355 Disease denotes respiratory infection http://purl.obolibrary.org/obo/MONDO_0024355
T3 346-355 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T4 693-702 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T5 865-874 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T6 966-975 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T7 1055-1064 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T8 1338-1342 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T9 1448-1450 Disease denotes he http://purl.obolibrary.org/obo/MONDO_0017319
T10 1470-1479 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T11 1623-1632 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T12 1862-1871 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T13 1921-1923 Disease denotes he http://purl.obolibrary.org/obo/MONDO_0017319
T14 2064-2083 Disease denotes 2019-nCoV infection http://purl.obolibrary.org/obo/MONDO_0100096
T15 2074-2083 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 89-90 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T2 183-188 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T3 295-296 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T4 506-514 http://purl.obolibrary.org/obo/CLO_0001658 denotes actively
T5 936-941 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lungs
T6 1146-1147 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T7 1458-1459 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T8 1596-1598 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T9 1612-1613 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T10 1850-1851 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T11 2025-2028 http://purl.obolibrary.org/obo/CLO_0050884 denotes ten
T12 2119-2122 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T13 2470-2475 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T14 2592-2593 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T15 2629-2631 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T16 2682-2684 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T17 2729-2731 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T18 2736-2738 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T19 2936-2942 http://purl.obolibrary.org/obo/CLO_0001658 denotes active
T20 3040-3048 http://purl.obolibrary.org/obo/CLO_0001658 denotes actively
T21 3602-3605 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T22 3938-3943 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T23 3944-3947 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T24 3948-3949 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T25 4031-4034 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T26 4728-4733 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T27 4734-4737 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T28 4871-4872 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T29 4886-4891 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T30 4940-4941 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T31 5292-5295 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T32 5335-5343 http://purl.obolibrary.org/obo/CLO_0001658 denotes actively
T33 5524-5530 http://purl.obolibrary.org/obo/CLO_0001658 denotes active
T34 5760-5765 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 1181-1187 Chemical denotes oxygen http://purl.obolibrary.org/obo/CHEBI_25805
T2 4826-4829 Chemical denotes Ban http://purl.obolibrary.org/obo/CHEBI_32595

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 1348-1357 http://purl.obolibrary.org/obo/GO_0016032 denotes virulence
T2 1348-1357 http://purl.obolibrary.org/obo/GO_0009405 denotes virulence
T3 3966-3980 http://purl.obolibrary.org/obo/GO_0019076 denotes viral shedding

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T2 0-284 Sentence denotes On January 31, 2020, the WHO declared the outbreak of novel coronavirus 2019 (2019-nCoV) a public health emergency over the world but did not restrict international transportation of human and trade.1 However, many countries began to limit immigrants from China after the declaration.
T3 285-481 Sentence denotes In Korea, a total of 24 patients of pneumonia or respiratory infection by 2019-nCoV have been confirmed by the Korea Center for Disease Control and Prevention (KCDC) by February 7, 2020 (Table 1).
T4 482-588 Sentence denotes The KCDC is closely and actively monitoring clinical patients and contacted persons by the known patients.
T5 589-674 Sentence denotes Here we need to pay attention to three of these patients—Patient number 1, 3, and 12.
T6 675-875 Sentence denotes The Patient 1 had pneumonia as early as three days after the symptom onset, although her condition was stable.2 During the first 3 days, she did not develop any clinical features suggesting pneumonia.
T7 876-1006 Sentence denotes If an early high-resolution computed tomography scan of the lungs had not been taken, the pneumonia would not have been diagnosed.
T8 1007-1117 Sentence denotes This suggests that the possibility of 2019-nCoV pneumonia cannot be excluded based only on the clinical clues.
T9 1118-1410 Sentence denotes And the patient is still in a severe clinical course with high oxygen demand for more than two weeks.2 Based on this clinical course, although the 2019-nCoV is tentatively known to have less severity of the disease than SARS, the virulence of the disease needs to be evaluated more carefully.
T10 1411-1525 Sentence denotes The Patient 3 was meaningful in that he caused a secondary infection to the Patient 6 in Korea for the first time.
T11 1526-1633 Sentence denotes The Patient 6 then infected two of his family members, Patient 10 and 11 to establish a tertiary infection.
T12 1634-1742 Sentence denotes This raises the concern that the 2019-nCoV could spread significantly into the community in the near future.
T13 1743-1823 Sentence denotes All of them were on the KCDC list and therefore they were detected rather early.
T14 1824-1909 Sentence denotes The Patient 12 contracted a secondary infection in Japan and had never been to Wuhan.
T15 1910-2098 Sentence denotes Therefore, he easily entered Korea without strict screening at the airport, and lived his daily life for more than ten days without any restriction until 2019-nCoV infection was confirmed.
T16 2099-2240 Sentence denotes The Patient 12 also has potential to spread the disease as widely as the Patient 3 to the community, and actually the Patient 14 is his wife.
T17 2241-2302 Sentence denotes Many patients shared common exposure and family transmission.
T18 2303-2435 Sentence denotes The Patients 3, 7, 8, and 15 had history of working or staying at the Wuhan International Fashion Center (The Place®), Wuhan, China.
T19 2436-2551 Sentence denotes They may have been exposed by the virus at the Center, and Patients 7 and 8 moved from China on the same air plane.
T20 2552-2568 Sentence denotes The Patients No.
T21 2569-2641 Sentence denotes 17 and 19 participated a conference in Singapore on January 18–23, 2020.
T22 2642-2668 Sentence denotes They did not travel Wuhan.
T23 2669-2721 Sentence denotes Patients 10, 11, and 21 were family or friend of No.
T24 2722-2728 Sentence denotes 6, No.
T25 2729-2757 Sentence denotes 18 and 22 were family of No.
T26 2758-2769 Sentence denotes 16, and No.
T27 2770-2790 Sentence denotes 20 was family of No.
T28 2791-2794 Sentence denotes 15.
T29 2795-2847 Sentence denotes Family transmission continues during home isolation.
T30 2848-2966 Sentence denotes However, the real problem is that the Patients 7, 8, 12, and 23 were not on the list of active monitoring by the KCDC.
T31 2967-3149 Sentence denotes This suggests that there are more possible patients although the KCDC is actively monitoring all of the people on the list of direct or indirect contacts with the confirmed patients.
T32 3150-3316 Sentence denotes As Yoo3 mentioned in the last issue of the Journal of Korean Medical Science, clearing the present outbreak of 2019-CoV in Korea may last longer period than expected.
T33 3317-3438 Sentence denotes Complete elimination of the 2019-Cov transmission depends critically on early detection of patients out of the KCDC list.
T34 3439-3527 Sentence denotes At this point, we must doubt whether the present defenses thus far have been successful.
T35 3528-3624 Sentence denotes Screening with the current guidelines applied only to those with symptoms has reached its limit.
T36 3625-3756 Sentence denotes Although evidence is still unclear, claims about the possibility of transmission from asymptomatic cases continue to be published.4
T37 3757-3858 Sentence denotes More than 6,000 people came already to Korea from Wuhan during holidays of this New Lunar Year's Day.
T38 3859-3930 Sentence denotes Given the incubation period, the next period of 1–2 weeks is important.
T39 3931-4068 Sentence denotes If the virus has a large amount of viral shedding before symptoms are evident, it is likely that it has been widespread in our community.
T40 4069-4204 Sentence denotes Now, serious consideration should be given to the temporary ban on visitors or to the high-level quarantine of all entrants from China.
T41 4205-4273 Sentence denotes It is reported that about 20,000 visitors come every day from China.
T42 4274-4455 Sentence denotes By February 6, 2020, the outbreak of 2019-nCoV is still progressing seriously in China over 28,000 patients with 560 deaths according to reports of the Chinese Committee of Hygiene.
T43 4456-4610 Sentence denotes No one can estimate how many patients may appear in the near future because thousands of patients and several tens of deaths are added every day in China.
T44 4611-4825 Sentence denotes Considering our demographics and population mechanics including Chinese visitors, we should seriously worry that the virus has been already disseminated into our community over the current known levels of exposure.
T45 4826-4931 Sentence denotes Ban of entry or high-level quarantine is not a violation of human rights, nor is it an irrational racism.
T46 4932-5009 Sentence denotes This is a serious health security emergency in Korea as well as in the world.
T47 5010-5176 Sentence denotes The government must discern this security agenda and decide how to upgrade enforcing the present national strategy against the 2019-nCoV outbreak as soon as possible.
T48 5177-5418 Sentence denotes Quarantine at the immigration for asymptomatic visitors from epidemic areas is an effective preventive method that has been historically proven and should be actively applied.56 However, this way looks not enough to end the present outbreak.
T49 5419-5628 Sentence denotes In addition, because the possibility of dissemination within our community cannot be ruled out, the more active preemptive containment policy is required targeting both domestic and international transmission.
T50 5629-5709 Sentence denotes Perhaps this is the last chance for us to contain further spread of the disease.
T51 5710-5766 Sentence denotes If it spreads further, we have no way to stop the virus.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 321-330 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T2 334-355 Phenotype denotes respiratory infection http://purl.obolibrary.org/obo/HP_0011947
T3 693-702 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T4 865-874 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T5 966-975 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T6 1055-1064 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
5 78-87 Species denotes 2019-nCoV Tax:2697049
6 183-188 Species denotes human Tax:9606
7 54-76 Disease denotes novel coronavirus 2019 MESH:C000657245
15 309-317 Species denotes patients Tax:9606
16 359-368 Species denotes 2019-nCoV Tax:2697049
17 535-543 Species denotes patients Tax:9606
18 558-565 Species denotes persons Tax:9606
19 579-587 Species denotes patients Tax:9606
20 321-330 Disease denotes pneumonia MESH:D011014
21 334-355 Disease denotes respiratory infection MESH:D012141
24 637-645 Species denotes patients Tax:9606
25 646-653 Species denotes Patient Tax:9606
35 679-686 Species denotes Patient Tax:9606
36 1126-1133 Species denotes patient Tax:9606
37 1265-1274 Species denotes 2019-nCoV Tax:2697049
38 1181-1187 Chemical denotes oxygen MESH:D010100
39 693-702 Disease denotes pneumonia MESH:D011014
40 865-874 Disease denotes pneumonia MESH:D011014
41 966-975 Disease denotes pneumonia MESH:D011014
42 1045-1064 Disease denotes 2019-nCoV pneumonia MESH:C000657245
43 1338-1342 Disease denotes SARS MESH:D045169
51 1415-1422 Species denotes Patient Tax:9606
52 1487-1494 Species denotes Patient Tax:9606
53 1530-1537 Species denotes Patient Tax:9606
54 1667-1676 Species denotes 2019-nCoV Tax:2697049
55 1470-1479 Disease denotes infection MESH:D007239
56 1545-1553 Disease denotes infected MESH:D007239
57 1623-1632 Disease denotes infection MESH:D007239
61 2172-2179 Species denotes Patient Tax:9606
62 1852-1871 Disease denotes secondary infection MESH:D060085
63 2064-2083 Disease denotes 2019-nCoV infection MESH:C000657245
65 2246-2254 Species denotes patients Tax:9606
70 2307-2315 Species denotes Patients Tax:9606
71 2495-2503 Species denotes Patients Tax:9606
72 2556-2564 Species denotes Patients Tax:9606
73 2669-2677 Species denotes Patients Tax:9606
81 2886-2894 Species denotes Patients Tax:9606
82 3010-3018 Species denotes patients Tax:9606
83 3071-3077 Species denotes people Tax:9606
84 3140-3148 Species denotes patients Tax:9606
85 3261-3269 Species denotes 2019-CoV Tax:2697049
86 3345-3353 Species denotes 2019-Cov Tax:2697049
87 3408-3416 Species denotes patients Tax:9606
89 3773-3779 Species denotes people Tax:9606
96 4311-4320 Species denotes 2019-nCoV Tax:2697049
97 4373-4381 Species denotes patients Tax:9606
98 4485-4493 Species denotes patients Tax:9606
99 4545-4553 Species denotes patients Tax:9606
100 4391-4397 Disease denotes deaths MESH:D003643
101 4574-4580 Disease denotes deaths MESH:D003643
104 4886-4891 Species denotes human Tax:9606
105 5137-5146 Species denotes 2019-nCoV Tax:2697049