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PMC:7004396 / 9742-11334 JSONTXT

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LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T149 41-50 SP_7 denotes 2019-nCoV
T148 51-57 SO:0001026 denotes genome
T147 161-172 NCBITaxon:11118 denotes coronavirus
T146 301-310 SP_7 denotes 2019-nCoV
T145 311-322 UBERON:0001004 denotes respiratory
T144 445-456 NCBITaxon:11118 denotes coronavirus
T143 457-466 SP_7 denotes 2019-nCoV
T142 508-512 CHEBI:33290;CHEBI:33290 denotes Food
T141 517-521 CHEBI:23888;CHEBI:23888 denotes Drug
T140 608-617 SP_7 denotes 2019-nCoV
T139 1009-1016 CHEBI:33893;CHEBI:33893 denotes Reagent
T138 1105-1111 SO:0001026 denotes genome
T137 1119-1124 NCBITaxon:10239 denotes virus
T136 1222-1229 SO:0000704 denotes genetic
T135 1337-1344 GO:0040007 denotes growing
T134 1349-1354 NCBITaxon:10239 denotes virus
T133 1437-1444 SO:0000704 denotes genetic
T132 1482-1487 NCBITaxon:10239 denotes virus

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T2 51-57 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T3 1105-1111 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T4 1270-1273 Body_part denotes DNA http://purl.org/sig/ont/fma/fma74412
T5 1358-1362 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T78 137-142 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T79 185-186 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T80 193-196 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T81 207-208 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T82 278-282 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T83 371-374 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T84 419-423 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T85 667-671 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T86 672-675 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T87 699-702 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T88 758-762 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T89 770-773 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T90 808-811 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T91 942-947 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T92 1088-1091 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T93 1119-1124 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T94 1325-1328 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T95 1349-1354 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T96 1358-1362 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T97 1482-1487 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T3 1270-1273 Chemical denotes DNA http://purl.obolibrary.org/obo/CHEBI_16991

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T71 0-177 Sentence denotes Chinese health officials posted the full 2019-nCoV genome sequence on January 10, 2020, to inform the development of specific diagnostic tests for this emergent coronavirus (1).
T72 178-355 Sentence denotes Within a week, CDC developed a Clinical Laboratory Improvement Amendments–approved real-time RT-PCR test that can diagnose 2019-nCoV respiratory samples from clinical specimens.
T73 356-483 Sentence denotes On January 24, CDC publicly posted the assay protocol for this test (https://www.cdc.gov/coronavirus/2019-nCoV/lab/index.html).
T74 484-652 Sentence denotes On January 4, 2020, the Food and Drug Administration issued an Emergency Use Authorization to enable emergency use of CDC’s 2019-nCoV Real-Time RT-PCR Diagnostic Panel.
T75 653-716 Sentence denotes To date, this test has been limited to use at CDC laboratories.
T76 717-807 Sentence denotes This authorization allows the use of the test at any CDC-qualified lab across the country.
T77 808-1074 Sentence denotes CDC is working closely with FDA and public health partners, including the American Public Health Laboratories, to rapidly share these tests domestically and internationally through CDC’s International Reagent Resource (https://www.internationalreagentresource.org/).
T78 1075-1324 Sentence denotes In addition, CDC uploaded the genome of the virus from the first reported cases in the United States to GenBank, the National Institutes of Health genetic sequence database of publicly available DNA sequences (https://www.ncbi.nlm.nih.gov/genbank/).
T79 1325-1462 Sentence denotes CDC also is growing the virus in cell culture, which is necessary for further studies, including for additional genetic characterization.
T80 1463-1592 Sentence denotes Once isolated, the virus will be made available through BEI Resources (https://www.beiresources.org/) to assist research efforts.

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
130 41-50 Species denotes 2019-nCoV Tax:2697049
131 161-172 Species denotes coronavirus Tax:11118
132 301-310 Species denotes 2019-nCoV Tax:2697049
133 445-466 Species denotes coronavirus/2019-nCoV Tax:2697049
134 608-617 Species denotes 2019-nCoV Tax:2697049
135 311-322 Species denotes respiratory Tax:12814