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PMC:7004396 / 15618-19152 JSONTXT

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LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T302 3263-3272 SP_7 denotes 2019-nCoV
T301 3453-3464 NCBITaxon:11118 denotes coronavirus
T298 2957-2966 SP_7 denotes 2019-nCoV
T295 2724-2735 UBERON:0001004 denotes respiratory
T294 2762-2773 NCBITaxon:11118 denotes coronavirus
T293 2775-2784 SP_7 denotes 2019-nCoV
T289 15-24 SP_7 denotes 2019-nCoV
T288 95-101 NCBITaxon:9606 denotes person
T287 105-111 NCBITaxon:9606 denotes person
T286 205-210 NCBITaxon:10239 denotes virus
T285 310-315 NCBITaxon:10239 denotes virus
T284 368-377 SP_7 denotes 2019-nCoV
T283 556-565 SP_7 denotes 2019-nCoV
T282 875-884 SP_7 denotes 2019-nCoV
T281 1071-1076 NCBITaxon:10239 denotes virus
T280 1205-1214 SP_7 denotes 2019-nCoV
T279 1439-1448 SP_7 denotes 2019-nCoV
T278 1571-1578 NCBITaxon:1 denotes persons
T277 1701-1706 NCBITaxon:10239 denotes virus
T276 1797-1806 SP_7 denotes 2019-nCoV
T275 1879-1885 UBERON:0000341 denotes throat
T274 1945-1956 UBERON:0001004 denotes respiratory
T273 1983-1994 NCBITaxon:12814;UBERON:0001004 denotes respiratory
T272 1995-2004 NCBITaxon:12814 denotes syncytial
T271 2005-2010 NCBITaxon:10239 denotes virus
T270 2022-2033 UBERON:0001004 denotes respiratory
T269 2034-2041 NCBITaxon:10239 denotes viruses
T268 2090-2097 NCBITaxon:1 denotes persons
T267 2267-2274 NCBITaxon:1 denotes persons
T266 2356-2365 SP_7 denotes 2019-nCoV
T265 2472-2482 GO:0065007 denotes monitoring
T264 2517-2524 GO:0007612 denotes learned
T263 2542-2547 NCBITaxon:10239 denotes virus

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T15 1879-1885 Body_part denotes throat http://purl.org/sig/ont/fma/fma228738

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T17 1879-1885 Body_part denotes throat http://purl.obolibrary.org/obo/UBERON_0000341

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T37 1840-1849 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T38 1874-1885 Disease denotes sore throat http://purl.obolibrary.org/obo/MONDO_0002258
T39 1972-1981 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T40 2075-2084 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T41 2138-2147 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T42 2228-2237 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T43 2310-2319 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T44 2356-2375 Disease denotes 2019-nCoV infection http://purl.obolibrary.org/obo/MONDO_0100096
T45 2366-2375 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T46 2431-2440 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T134 25-28 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T135 135-136 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T136 205-210 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T137 310-315 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T138 397-400 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T139 1071-1076 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T140 1488-1490 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T141 1566-1570 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T142 1701-1706 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T143 1925-1926 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T144 2005-2010 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T145 2034-2041 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T146 2542-2547 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T147 2567-2570 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T148 2754-2755 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T149 2949-2951 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T150 3006-3009 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T151 3090-3093 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T105 0-10 Sentence denotes Discussion
T106 11-181 Sentence denotes The 2019-nCoV has impacted multiple countries, caused severe illness, and sustained person-to-person transmission making it a concerning and serious public health threat.
T107 182-242 Sentence denotes It is unclear how this virus will impact the U.S. over time.
T108 243-396 Sentence denotes For the general population, who are unlikely to be exposed to this virus at the current time, the immediate health risk from 2019-nCoV is considered low.
T109 397-572 Sentence denotes CDC, multiple other federal agencies, state and local health departments, and other partners are implementing aggressive measures to slow U.S. transmission of 2019-nCoV (4,5).
T110 573-784 Sentence denotes These measures require the identification of cases and contacts in the United States and the effective management of the estimated 14,000 travelers arriving from mainland China to the United States each day (3).
T111 785-874 Sentence denotes These measures are being implemented based on the assumption that there will be more U.S.
T112 875-1098 Sentence denotes 2019-nCoV cases occurring with potential chains of transmission, with the understanding that these measures might not prevent the eventual establishment of ongoing, widespread transmission of the virus in the United States.
T113 1099-1324 Sentence denotes It is important for public health agencies, health care providers, and the public to be aware of this new 2019-nCoV so that coordinated, timely, and effective actions can help prevent additional cases or poor health outcomes.
T114 1325-1587 Sentence denotes The critical role that the U.S. health care system plays in halting or significantly slowing U.S. transmission of 2019-nCoV is already evident: eight of the first 11 U.S. cases were detected by clinicians collaborating with public health to test persons at risk.
T115 1588-1796 Sentence denotes The early recognition of cases in the United States reduces transmission risk and increases understanding of the virus, including its transmission and severity, to inform national and global response actions.
T116 1797-2063 Sentence denotes 2019-nCoV symptoms are similar to those of influenza (e.g., fever, cough, or sore throat), and the outbreak is occurring during a time of year when respiratory illnesses from influenza, respiratory syncytial virus, and other respiratory viruses are highly prevalent.
T117 2064-2243 Sentence denotes To prevent influenza, all persons aged ≥6 months should receive an annual influenza vaccine, and vaccination is still available and effective in helping to prevent influenza (10).
T118 2244-2441 Sentence denotes Reducing the number of persons in the United States with seasonal influenza will reduce possible confusion with 2019-nCoV infection and possible additional risk to patients with seasonal influenza.
T119 2442-2505 Sentence denotes Public health authorities are monitoring the situation closely.
T120 2506-2635 Sentence denotes As more is learned about this novel virus and this outbreak, CDC will rapidly incorporate new knowledge into guidance for action.
T121 2636-2643 Sentence denotes Summary
T122 2645-2684 Sentence denotes What is already known about this topic?
T123 2685-2817 Sentence denotes In December 2019, an outbreak of acute respiratory illness caused by a novel coronavirus (2019-nCoV) was detected in mainland China.
T124 2818-2899 Sentence denotes Cases have been reported in 26 additional locations, including the United States.
T125 2901-2930 Sentence denotes What is added by this report?
T126 2931-2956 Sentence denotes Nine of the first 11 U.S.
T127 2957-3005 Sentence denotes 2019-nCoV patients were exposed in Wuhan, China.
T128 3006-3034 Sentence denotes CDC expects more U.S. cases.
T129 3036-3089 Sentence denotes What are the implications for public health practice?
T130 3090-3399 Sentence denotes CDC, multiple other federal agencies, state and local health departments, and other partners are implementing aggressive measures to substantially slow U.S. transmission of 2019-nCoV, including identification of U.S. cases and contacts and managing travelers arriving from mainland China to the United States.
T131 3400-3534 Sentence denotes Interim guidance is available at https://www.cdc.gov/coronavirus/index.html and will be updated as more information becomes available.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T21 1857-1862 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T22 1864-1869 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T23 1874-1885 Phenotype denotes sore throat http://purl.obolibrary.org/obo/HP_0033050
T24 1945-1966 Phenotype denotes respiratory illnesses http://purl.obolibrary.org/obo/HP_0002086
T25 2724-2743 Phenotype denotes respiratory illness http://purl.obolibrary.org/obo/HP_0002086

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
240 15-24 Species denotes 2019-nCoV Tax:2697049
241 368-377 Species denotes 2019-nCoV Tax:2697049
242 556-565 Species denotes 2019-nCoV Tax:2697049
243 875-884 Species denotes 2019-nCoV Tax:2697049
247 1205-1214 Species denotes 2019-nCoV Tax:2697049
248 1439-1448 Species denotes 2019-nCoV Tax:2697049
249 1571-1578 Species denotes persons Tax:9606
261 1797-1806 Species denotes 2019-nCoV Tax:2697049
262 1983-2010 Species denotes respiratory syncytial virus Tax:12814
263 2090-2097 Species denotes persons Tax:9606
264 2267-2274 Species denotes persons Tax:9606
265 2408-2416 Species denotes patients Tax:9606
266 2022-2033 Species denotes respiratory Tax:12814
267 1857-1862 Disease denotes fever MESH:D005334
268 1864-1869 Disease denotes cough MESH:D003371
269 1874-1885 Disease denotes sore throat MESH:D010608
270 1945-1966 Disease denotes respiratory illnesses MESH:D012140
271 2356-2375 Disease denotes 2019-nCoV infection MESH:C000657245
275 2756-2773 Species denotes novel coronavirus Tax:2697049
276 2775-2784 Species denotes 2019-nCoV Tax:2697049
277 2724-2743 Disease denotes respiratory illness MESH:D012140
280 2957-2966 Species denotes 2019-nCoV Tax:2697049
281 2967-2975 Species denotes patients Tax:9606
284 3263-3272 Species denotes 2019-nCoV Tax:2697049
285 3453-3464 Species denotes coronavirus Tax:11118

2_test

Id Subject Object Predicate Lexical cue
32027631-25254666-70153122 567-568 25254666 denotes 4
32027631-23260039-70153123 569-570 23260039 denotes 5
32027631-31441906-70153124 2239-2241 31441906 denotes 10