> top > docs > PMC:7004396 > spans > 154-19152 > annotations

PMC:7004396 / 154-19152 JSONTXT

Annnotations TAB JSON ListView MergeView

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T304 5228-5239 NCBITaxon:11118 denotes coronavirus
T302 18727-18736 SP_7 denotes 2019-nCoV
T301 18917-18928 NCBITaxon:11118 denotes coronavirus
T298 18421-18430 SP_7 denotes 2019-nCoV
T295 18188-18199 UBERON:0001004 denotes respiratory
T294 18226-18237 NCBITaxon:11118 denotes coronavirus
T293 18239-18248 SP_7 denotes 2019-nCoV
T289 15479-15488 SP_7 denotes 2019-nCoV
T288 15559-15565 NCBITaxon:9606 denotes person
T287 15569-15575 NCBITaxon:9606 denotes person
T286 15669-15674 NCBITaxon:10239 denotes virus
T285 15774-15779 NCBITaxon:10239 denotes virus
T284 15832-15841 SP_7 denotes 2019-nCoV
T283 16020-16029 SP_7 denotes 2019-nCoV
T282 16339-16348 SP_7 denotes 2019-nCoV
T281 16535-16540 NCBITaxon:10239 denotes virus
T280 16669-16678 SP_7 denotes 2019-nCoV
T279 16903-16912 SP_7 denotes 2019-nCoV
T278 17035-17042 NCBITaxon:1 denotes persons
T277 17165-17170 NCBITaxon:10239 denotes virus
T276 17261-17270 SP_7 denotes 2019-nCoV
T275 17343-17349 UBERON:0000341 denotes throat
T274 17409-17420 UBERON:0001004 denotes respiratory
T273 17447-17458 NCBITaxon:12814;UBERON:0001004 denotes respiratory
T272 17459-17468 NCBITaxon:12814 denotes syncytial
T271 17469-17474 NCBITaxon:10239 denotes virus
T270 17486-17497 UBERON:0001004 denotes respiratory
T269 17498-17505 NCBITaxon:10239 denotes viruses
T268 17554-17561 NCBITaxon:1 denotes persons
T267 17731-17738 NCBITaxon:1 denotes persons
T266 17820-17829 SP_7 denotes 2019-nCoV
T265 17936-17946 GO:0065007 denotes monitoring
T264 17981-17988 GO:0007612 denotes learned
T263 18006-18011 NCBITaxon:10239 denotes virus
T244 11251-11260 SP_7 denotes 2019-nCoV
T243 11399-11407 GO:0007612 denotes learning
T242 11414-11423 SP_7 denotes 2019-nCoV
T241 11500-11511 UBERON:0001004 denotes respiratory
T240 11543-11547 SP_9 denotes MERS
T239 11553-11557 SP_10 denotes SARS
T238 11596-11605 SP_7 denotes 2019-nCoV
T237 11683-11692 SP_7 denotes 2019-nCoV
T236 12051-12062 NCBITaxon:11118 denotes coronavirus
T235 12063-12072 SP_7 denotes 2019-nCoV
T234 12218-12227 SP_7 denotes 2019-nCoV
T233 12395-12418 UBERON:0001558 denotes lower respiratory tract
T232 12481-12490 SP_7 denotes 2019-nCoV
T231 12532-12555 UBERON:0001558 denotes lower respiratory tract
T230 12571-12576 UBERON:0002048 denotes cough
T229 12593-12599 UBERON:0002048 denotes breath
T228 12608-12614 NCBITaxon:1 denotes person
T227 12717-12726 SP_7 denotes 2019-nCoV
T226 12804-12827 UBERON:0001558 denotes lower respiratory tract
T225 12843-12848 UBERON:0002048 denotes cough
T224 12865-12871 UBERON:0002048 denotes breath
T223 12880-12886 NCBITaxon:1 denotes person
T222 13010-13033 UBERON:0001558 denotes lower respiratory tract
T221 13049-13054 UBERON:0002048 denotes cough
T220 13112-13118 NCBITaxon:1 denotes person
T219 13401-13412 UBERON:0001004;NCBITaxon:12814 denotes respiratory
T218 13413-13422 NCBITaxon:12814 denotes syncytial
T217 13423-13428 NCBITaxon:10239 denotes virus
T216 13705-13712 NCBITaxon:9606 denotes persons
T215 13963-13966 UBERON:0000970 denotes eye
T214 13998-14002 UBERON:0001456 denotes face
T213 14223-14232 SP_7 denotes 2019-nCoV
T212 14340-14349 SP_7 denotes 2019-nCoV
T211 14414-14437 UBERON:0001558 denotes lower respiratory tract
T210 14486-14491 UBERON:0001988 denotes stool
T209 14495-14500 UBERON:0001088 denotes urine
T208 14650-14657 NCBITaxon:1 denotes persons
T207 14673-14682 SP_7 denotes 2019-nCoV
T206 14847-14858 NCBITaxon:11118 denotes coronavirus
T205 14859-14868 SP_7 denotes 2019-ncov
T204 15147-15158 UBERON:0001004 denotes respiratory
T203 15182-15191 SP_7 denotes 2019-nCoV
T202 15256-15261 UBERON:0002398 denotes hands
T201 15277-15282 UBERON:0002048 denotes cough
T200 15428-15439 NCBITaxon:11118 denotes coronavirus
T199 15440-15449 SP_7 denotes 2019-ncov
T149 9629-9638 SP_7 denotes 2019-nCoV
T148 9639-9645 SO:0001026 denotes genome
T147 9749-9760 NCBITaxon:11118 denotes coronavirus
T146 9889-9898 SP_7 denotes 2019-nCoV
T145 9899-9910 UBERON:0001004 denotes respiratory
T144 10033-10044 NCBITaxon:11118 denotes coronavirus
T143 10045-10054 SP_7 denotes 2019-nCoV
T142 10096-10100 CHEBI:33290;CHEBI:33290 denotes Food
T141 10105-10109 CHEBI:23888;CHEBI:23888 denotes Drug
T140 10196-10205 SP_7 denotes 2019-nCoV
T139 10597-10604 CHEBI:33893;CHEBI:33893 denotes Reagent
T138 10693-10699 SO:0001026 denotes genome
T137 10707-10712 NCBITaxon:10239 denotes virus
T136 10810-10817 SO:0000704 denotes genetic
T135 10925-10932 GO:0040007 denotes growing
T134 10937-10942 NCBITaxon:10239 denotes virus
T133 11025-11032 SO:0000704 denotes genetic
T132 11070-11075 NCBITaxon:10239 denotes virus
T125 5944-5953 SP_7 denotes 2019-nCoV
T124 6121-6130 SP_7 denotes 2019-nCoV
T123 6452-6457 NCBITaxon:10239 denotes virus
T122 6592-6597 NCBITaxon:10239 denotes virus
T121 7054-7063 SP_7 denotes 2019-nCoV
T120 7287-7297 GO:0065007 denotes regulatory
T119 8618-8625 NCBITaxon:1 denotes persons
T118 8812-8821 SP_7 denotes 2019-nCoV
T117 9326-9337 NCBITaxon:1 denotes individuals
T106 4022-4028 NCBITaxon:9606 denotes person
T105 4065-4074 SP_7 denotes 2019-nCoV
T104 4132-4139 NCBITaxon:9606 denotes persons
T103 4415-4424 SP_7 denotes 2019-nCoV
T102 4453-4474 GO:0001171 denotes reverse transcription
T101 5135-5141 GO:0016265 denotes deaths
T91 84-95 UBERON:0001004 denotes respiratory
T90 153-159 NCBITaxon:33208 denotes animal
T89 291-302 NCBITaxon:11118 denotes coronavirus
T88 304-313 SP_7 denotes 2019-nCoV
T87 474-480 GO:0016265 denotes deaths
T86 659-665 NCBITaxon:9606 denotes person
T85 669-675 NCBITaxon:9606 denotes person
T84 697-702 GO:0016265 denotes death
T83 861-870 SP_7 denotes 2019-nCoV
T82 994-999 SP_6;NCBITaxon:9606 denotes Human
T81 1079-1088 SP_7 denotes 2019-nCoV
T80 1227-1234 NCBITaxon:1 denotes Persons
T79 1278-1289 NCBITaxon:11118 denotes Coronavirus
T78 1337-1344 NCBITaxon:1 denotes persons
T77 1602-1611 SP_7 denotes 2019-nCoV
T76 1902-1911 SP_7 denotes 2019-nCoV
T75 2052-2057 NCBITaxon:10239 denotes virus
T74 2328-2337 SP_7 denotes 2019-nCoV
T73 2515-2525 GO:0065007 denotes monitoring
T72 2560-2567 GO:0007612 denotes learned
T71 2585-2590 NCBITaxon:10239 denotes virus
T70 2730-2743 NCBITaxon:11118 denotes coronaviruses
T69 2787-2791 SP_9 denotes MERS
T68 2832-2836 SP_10 denotes SARS
T67 2857-2862 SP_6;NCBITaxon:9606 denotes human
T66 2863-2869 NCBITaxon:33208 denotes animal
T65 2913-2922 SP_7 denotes 2019-nCoV
T64 3010-3016 NCBITaxon:9606 denotes Person
T63 3020-3026 NCBITaxon:9606 denotes person
T62 3074-3079 NCBITaxon:10239 denotes virus
T61 3103-3110 NCBITaxon:9606 denotes persons
T60 3133-3142 SP_7 denotes 2019-nCoV
T59 3157-3170 NCBITaxon:11118 denotes coronaviruses
T58 3182-3186 SP_9 denotes MERS
T57 3191-3195 SP_10 denotes SARS
T56 3229-3240 UBERON:0001004 denotes respiratory
T55 3297-3306 SP_7 denotes 2019-nCoV
T54 3332-3337 UBERON:0002048 denotes cough
T53 3415-3419 SP_9 denotes MERS
T52 3424-3428 SP_10 denotes SARS
T51 3429-3442 NCBITaxon:11118 denotes coronaviruses
T50 3474-3483 SP_7 denotes 2019-nCoV
T49 3585-3591 UBERON:0007023 denotes adults
T48 3596-3603 NCBITaxon:1 denotes persons
T47 3653-3667 UBERON:0002405 denotes immune systems
T46 3721-3726 NCBITaxon:10239 denotes virus
T45 3776-3787 NCBITaxon:11118 denotes coronavirus
T44 3823-3830 NCBITaxon:1 denotes persons

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 3653-3667 Body_part denotes immune systems http://purl.org/sig/ont/fma/fma9825
T2 9639-9645 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T3 10693-10699 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T4 10858-10861 Body_part denotes DNA http://purl.org/sig/ont/fma/fma74412
T5 10946-10950 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T6 12395-12418 Body_part denotes lower respiratory tract http://purl.org/sig/ont/fma/fma45662
T7 12532-12555 Body_part denotes lower respiratory tract http://purl.org/sig/ont/fma/fma45662
T8 12804-12827 Body_part denotes lower respiratory tract http://purl.org/sig/ont/fma/fma45662
T9 13010-13033 Body_part denotes lower respiratory tract http://purl.org/sig/ont/fma/fma45662
T10 13963-13966 Body_part denotes eye http://purl.org/sig/ont/fma/fma54448
T11 13998-14002 Body_part denotes face http://purl.org/sig/ont/fma/fma24728
T12 14414-14437 Body_part denotes lower respiratory tract http://purl.org/sig/ont/fma/fma45662
T13 14486-14491 Body_part denotes stool http://purl.org/sig/ont/fma/fma64183
T14 14495-14500 Body_part denotes urine http://purl.org/sig/ont/fma/fma12274
T15 17343-17349 Body_part denotes throat http://purl.org/sig/ont/fma/fma228738

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 3653-3667 Body_part denotes immune systems http://purl.obolibrary.org/obo/UBERON_0002405
T2 12395-12418 Body_part denotes lower respiratory tract http://purl.obolibrary.org/obo/UBERON_0001558
T3 12401-12418 Body_part denotes respiratory tract http://purl.obolibrary.org/obo/UBERON_0000065
T4 12532-12555 Body_part denotes lower respiratory tract http://purl.obolibrary.org/obo/UBERON_0001558
T5 12538-12555 Body_part denotes respiratory tract http://purl.obolibrary.org/obo/UBERON_0000065
T6 12804-12827 Body_part denotes lower respiratory tract http://purl.obolibrary.org/obo/UBERON_0001558
T7 12810-12827 Body_part denotes respiratory tract http://purl.obolibrary.org/obo/UBERON_0000065
T8 13010-13033 Body_part denotes lower respiratory tract http://purl.obolibrary.org/obo/UBERON_0001558
T9 13016-13033 Body_part denotes respiratory tract http://purl.obolibrary.org/obo/UBERON_0000065
T10 13963-13966 Body_part denotes eye http://purl.obolibrary.org/obo/UBERON_0000970
T11 13998-14002 Body_part denotes face http://purl.obolibrary.org/obo/UBERON_0001456
T12 14414-14437 Body_part denotes lower respiratory tract http://purl.obolibrary.org/obo/UBERON_0001558
T13 14420-14437 Body_part denotes respiratory tract http://purl.obolibrary.org/obo/UBERON_0000065
T14 14486-14491 Body_part denotes stool http://purl.obolibrary.org/obo/UBERON_0001988
T15 14495-14500 Body_part denotes urine http://purl.obolibrary.org/obo/UBERON_0001088
T16 15256-15261 Body_part denotes hands http://purl.obolibrary.org/obo/UBERON_0002398
T17 17343-17349 Body_part denotes throat http://purl.obolibrary.org/obo/UBERON_0000341

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 1010-1013 Disease denotes HHS http://purl.obolibrary.org/obo/MONDO_0008897|http://purl.obolibrary.org/obo/MONDO_0011549
T3 2328-2347 Disease denotes 2019-nCoV infection http://purl.obolibrary.org/obo/MONDO_0100096
T4 2338-2347 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T5 2797-2830 Disease denotes Severe Acute Respiratory Syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T6 2832-2836 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T7 3191-3195 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T8 3297-3316 Disease denotes 2019-nCoV infection http://purl.obolibrary.org/obo/MONDO_0100096
T9 3307-3316 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T10 3424-3428 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T11 3474-3493 Disease denotes 2019-nCoV infection http://purl.obolibrary.org/obo/MONDO_0100096
T12 3484-3493 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T13 3530-3539 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T14 4065-4084 Disease denotes 2019-nCoV infection http://purl.obolibrary.org/obo/MONDO_0100096
T15 4075-4084 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T16 4415-4434 Disease denotes 2019-nCoV infection http://purl.obolibrary.org/obo/MONDO_0100096
T17 4425-4434 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T18 7427-7437 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T19 11195-11204 Disease denotes Infection http://purl.obolibrary.org/obo/MONDO_0005550
T20 11532-11541 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T21 11553-11557 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T22 11596-11615 Disease denotes 2019-nCoV infection http://purl.obolibrary.org/obo/MONDO_0100096
T23 11606-11615 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T24 12218-12237 Disease denotes 2019-nCoV infection http://purl.obolibrary.org/obo/MONDO_0100096
T25 12228-12237 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T26 12717-12736 Disease denotes 2019-nCoV infection http://purl.obolibrary.org/obo/MONDO_0100096
T27 12727-12736 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T28 13387-13396 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T29 13803-13812 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T30 14076-14085 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T31 14251-14260 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T32 14340-14359 Disease denotes 2019-nCoV infection http://purl.obolibrary.org/obo/MONDO_0100096
T33 14350-14359 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T34 14673-14692 Disease denotes 2019-nCoV infection http://purl.obolibrary.org/obo/MONDO_0100096
T35 14683-14692 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T36 14801-14810 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T37 17304-17313 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T38 17338-17349 Disease denotes sore throat http://purl.obolibrary.org/obo/MONDO_0002258
T39 17436-17445 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T40 17539-17548 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T41 17602-17611 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T42 17692-17701 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T43 17774-17783 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T44 17820-17839 Disease denotes 2019-nCoV infection http://purl.obolibrary.org/obo/MONDO_0100096
T45 17830-17839 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T46 17895-17904 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 56-57 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T2 153-159 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animal
T3 283-284 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T4 385-386 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T5 726-728 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T6 807-819 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T7 892-893 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T8 994-999 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T9 1034-1035 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T10 1153-1154 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T11 1244-1245 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T12 1448-1451 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T13 2052-2057 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T14 2585-2590 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T15 2610-2613 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T16 2681-2684 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T17 2857-2862 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T18 2863-2869 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animal
T19 2937-2938 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T20 2981-2984 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T21 3074-3079 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T22 3444-3447 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T23 3653-3667 http://purl.obolibrary.org/obo/UBERON_0002405 denotes immune systems
T24 3721-3726 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T25 4117-4118 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T26 4128-4131 http://purl.obolibrary.org/obo/CLO_0001230 denotes 293
T27 4128-4131 http://purl.obolibrary.org/obo/CLO_0037237 denotes 293
T28 4128-4131 http://purl.obolibrary.org/obo/CLO_0050903 denotes 293
T29 4128-4131 http://purl.obolibrary.org/obo/CLO_0054249 denotes 293
T30 4128-4131 http://purl.obolibrary.org/obo/CLO_0054250 denotes 293
T31 4128-4131 http://purl.obolibrary.org/obo/CLO_0054251 denotes 293
T32 4128-4131 http://purl.obolibrary.org/obo/CLO_0054252 denotes 293
T33 4145-4147 http://purl.obolibrary.org/obo/CLO_0001313 denotes 36
T34 4388-4390 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T35 4441-4442 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T36 4529-4532 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T37 4540-4542 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T38 4775-4776 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T39 5251-5253 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T40 5429-5433 http://purl.obolibrary.org/obo/CLO_0001053 denotes 1/21
T41 5546-5548 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T42 5586-5588 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T43 5809-5811 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T44 5884-5890 http://purl.obolibrary.org/obo/UBERON_0003100 denotes female
T45 5896-5900 http://purl.obolibrary.org/obo/UBERON_0003101 denotes male
T46 5896-5900 http://www.ebi.ac.uk/efo/EFO_0000970 denotes male
T47 5926-5929 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T48 5942-5943 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T49 6019-6022 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T50 6023-6032 http://purl.obolibrary.org/obo/CLO_0001658 denotes activated
T51 6158-6161 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T52 6162-6165 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T53 6452-6457 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T54 6540-6543 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T55 6544-6547 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T56 6592-6597 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T57 6631-6634 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T58 6755-6758 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T59 6778-6781 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T60 6827-6833 http://purl.obolibrary.org/obo/CLO_0001658 denotes active
T61 6845-6848 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T62 6893-6896 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T63 6954-6957 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T64 6965-6966 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T65 7085-7087 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T66 7089-7092 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T67 7100-7101 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T68 7229-7231 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T69 7271-7272 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T70 7576-7579 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T71 8121-8124 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T72 8262-8263 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T73 8321-8324 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T74 8601-8602 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T75 8700-8703 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T76 8792-8798 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T77 9483-9485 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T78 9725-9730 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T79 9773-9774 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T80 9781-9784 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T81 9795-9796 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T82 9866-9870 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T83 9959-9962 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T84 10007-10011 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T85 10255-10259 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T86 10260-10263 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T87 10287-10290 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T88 10346-10350 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T89 10358-10361 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T90 10396-10399 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T91 10530-10535 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T92 10676-10679 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T93 10707-10712 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T94 10913-10916 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T95 10937-10942 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T96 10946-10950 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T97 11070-11075 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T98 11369-11372 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T99 11390-11398 http://purl.obolibrary.org/obo/CLO_0001658 denotes actively
T100 11433-11436 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T101 11723-11726 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T102 11849-11852 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T103 11860-11861 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T104 11933-11941 http://purl.obolibrary.org/obo/CLO_0001658 denotes Activity
T105 12325-12326 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T106 12395-12418 http://purl.obolibrary.org/obo/UBERON_0001558 denotes lower respiratory tract
T107 12461-12468 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T108 12532-12555 http://purl.obolibrary.org/obo/UBERON_0001558 denotes lower respiratory tract
T109 12651-12654 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T110 12681-12682 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T111 12804-12827 http://purl.obolibrary.org/obo/UBERON_0001558 denotes lower respiratory tract
T112 12892-12893 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T113 13010-13033 http://purl.obolibrary.org/obo/UBERON_0001558 denotes lower respiratory tract
T114 13124-13125 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T115 13236-13242 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T116 13423-13428 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T117 13455-13458 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T118 13480-13481 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T119 13567-13568 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T120 13631-13632 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T121 13685-13687 http://purl.obolibrary.org/obo/CLO_0003401 denotes ft
T122 13746-13747 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T123 13963-13966 http://www.ebi.ac.uk/efo/EFO_0000827 denotes eye
T124 13996-13997 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T125 13998-14002 http://purl.obolibrary.org/obo/UBERON_0001456 denotes face
T126 14213-14214 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T127 14240-14246 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T128 14361-14364 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T129 14391-14398 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T130 14414-14437 http://purl.obolibrary.org/obo/UBERON_0001558 denotes lower respiratory tract
T131 14586-14587 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T132 15009-15012 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T133 15395-15398 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T134 15489-15492 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T135 15599-15600 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T136 15669-15674 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T137 15774-15779 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T138 15861-15864 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T139 16535-16540 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T140 16952-16954 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T141 17030-17034 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T142 17165-17170 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T143 17389-17390 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T144 17469-17474 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T145 17498-17505 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T146 18006-18011 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T147 18031-18034 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T148 18218-18219 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T149 18413-18415 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T150 18470-18473 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T151 18554-18557 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 1010-1013 Chemical denotes HHS http://purl.obolibrary.org/obo/CHEBI_88937
T2 5896-5900 Chemical denotes male http://purl.obolibrary.org/obo/CHEBI_30780
T3 10858-10861 Chemical denotes DNA http://purl.obolibrary.org/obo/CHEBI_16991
T4 11871-11877 Chemical denotes Action http://purl.obolibrary.org/obo/CHEBI_5133

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 4453-4474 http://purl.obolibrary.org/obo/GO_0001171 denotes reverse transcription
T2 4461-4474 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T3 6415-6424 http://purl.obolibrary.org/obo/GO_0016032 denotes virulence
T4 6415-6424 http://purl.obolibrary.org/obo/GO_0009405 denotes virulence
T5 8242-8251 http://purl.obolibrary.org/obo/GO_0007585 denotes breathing
T6 11399-11407 http://purl.obolibrary.org/obo/GO_0007612 denotes learning

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T2 0-222 Sentence denotes On December 31, 2019, Chinese health officials reported a cluster of cases of acute respiratory illness in persons associated with the Hunan seafood and animal market in the city of Wuhan, Hubei Province, in central China.
T3 223-360 Sentence denotes On January 7, 2020, Chinese health officials confirmed that a novel coronavirus (2019-nCoV) was associated with this initial cluster (1).
T4 361-553 Sentence denotes As of February 4, 2020, a total of 20,471 confirmed cases, including 2,788 (13.6%) with severe illness,* and 425 deaths (2.1%) had been reported by the National Health Commission of China (2).
T5 554-707 Sentence denotes Cases have also been reported in 26 locations outside of mainland China, including documentation of some person-to-person transmission and one death (2).
T6 708-774 Sentence denotes As of February 4, 11 cases had been reported in the United States.
T7 775-968 Sentence denotes On January 30, the World Health Organization (WHO) Director-General declared that the 2019-nCoV outbreak constitutes a Public Health Emergency of International Concern.† On January 31, the U.S.
T8 969-1447 Sentence denotes Department of Health and Human Services (HHS) Secretary declared a U.S. public health emergency to respond to 2019-nCoV.§ Also on January 31, the president of the United States signed a “Proclamation on Suspension of Entry as Immigrants and Nonimmigrants of Persons who Pose a Risk of Transmitting 2019 Novel Coronavirus,” which limits entry into the United States of persons who traveled to mainland China to U.S. citizens and lawful permanent residents and their families (3).
T9 1448-1639 Sentence denotes CDC, multiple other federal agencies, state and local health departments, and other partners are implementing aggressive measures to slow transmission of 2019-nCoV in the United States (4,5).
T10 1640-1834 Sentence denotes These measures require the identification of cases and their contacts in the United States and the appropriate assessment and care of travelers arriving from mainland China to the United States.
T11 1835-1939 Sentence denotes These measures are being implemented in anticipation of additional 2019-nCoV cases in the United States.
T12 1940-2484 Sentence denotes Although these measures might not prevent the eventual establishment of ongoing, widespread transmission of the virus in the United States, they are being implemented to 1) slow the spread of illness; 2) provide time to better prepare health care systems and the general public to be ready if widespread transmission with substantial associated illness occurs; and 3) better characterize 2019-nCoV infection to guide public health recommendations and the development of medical countermeasures including diagnostics, therapeutics, and vaccines.
T13 2485-2548 Sentence denotes Public health authorities are monitoring the situation closely.
T14 2549-2724 Sentence denotes As more is learned about this novel virus and this outbreak, CDC will rapidly incorporate new knowledge into guidance for action by CDC and state and local health departments.
T15 2725-2883 Sentence denotes Some coronaviruses, such as Middle East Respiratory Syndrome (MERS) and Severe Acute Respiratory Syndrome (SARS), are the result of human-animal interactions.
T16 2884-3009 Sentence denotes Preliminary investigation of 2019-nCoV also suggests a zoonotic origin (6), but the exact origin has not yet been determined.
T17 3010-3132 Sentence denotes Person-to-person spread is evident (7); however, how easily the virus is transmitted between persons is currently unclear.
T18 3133-3250 Sentence denotes 2019-nCoV is similar to coronaviruses that cause MERS and SARS, which are transmitted mainly by respiratory droplets.
T19 3251-3367 Sentence denotes Signs and symptoms of patients with confirmed 2019-nCoV infection include fever, cough, and shortness of breath (8).
T20 3368-3540 Sentence denotes Based on the incubation period of illness from MERS and SARS coronaviruses, CDC believes that symptoms of 2019-nCoV infection occur within 2 to 14 days following infection.
T21 3541-3956 Sentence denotes Preliminary information suggests that older adults and persons with underlying health conditions or compromised immune systems might be at higher risk for severe illness from this virus (9); however, many characteristics of this novel coronavirus and how it might affect individual persons and potentially vulnerable population subgroups, such as the elderly or those with chronic health conditions, remain unclear.
T22 3958-3984 Sentence denotes Epidemiology of First U.S.
T23 3985-3990 Sentence denotes Cases
T24 3991-4098 Sentence denotes On January 21, 2020, the first person in the United States with diagnosed 2019-nCoV infection was reported.
T25 4099-4194 Sentence denotes As of February 4, a total of 293 persons from 36 states, the District of Columbia, and the U.S.
T26 4195-4372 Sentence denotes Virgin Islands were under investigation based on current patient under investigation (PUI) definitions,¶ and also included those being evaluated because they are close contacts.
T27 4373-4533 Sentence denotes Of these PUIs, 11 patients have confirmed 2019-nCoV infection using a real-time reverse transcription–polymerase chain reaction (RT-PCR) assay developed by CDC.
T28 4534-4588 Sentence denotes These 11 cases were diagnosed in the following states:
T29 4589-4688 Sentence denotes Arizona (one), California (six), Illinois (two), Massachusetts (one), and Washington (one) (Table).
T30 4689-4729 Sentence denotes Nine cases were in travelers from Wuhan.
T31 4730-4900 Sentence denotes Eight of these nine cases were identified as a result of patients seeking clinical care for symptoms and clinicians connecting with the appropriate public health systems.
T32 4901-5065 Sentence denotes Two cases (one each in California and Illinois) occurred in close contacts of two confirmed cases and were diagnosed as part of routine monitoring of case contacts.
T33 5066-5131 Sentence denotes All patients are being monitored closely for progressing illness.
T34 5132-5182 Sentence denotes No deaths have been reported in the United States.
T35 5183-5299 Sentence denotes TABLE Characteristics of initial 2019 novel coronavirus cases (N = 11) — United States, January 21–February 4, 2020
T36 5300-5398 Sentence denotes Case State Approximate age (yrs) Sex Place of exposure Date laboratory confirmation announced
T37 5399-5438 Sentence denotes 1 Washington 30s M Wuhan 1/21/2020
T38 5439-5476 Sentence denotes 2 Illinois 60s F Wuhan 1/24/2020
T39 5477-5513 Sentence denotes 3 Arizona 20s M Wuhan 1/26/2020
T40 5514-5553 Sentence denotes 4 California 30s M Wuhan 1/27/2020
T41 5554-5593 Sentence denotes 5 California 50s M Wuhan 1/27/2020
T42 5594-5644 Sentence denotes 6 Illinois 60s M Household Illinois 1/30/2020
T43 5645-5684 Sentence denotes 7 California 40s M Wuhan 1/31/2020
T44 5685-5727 Sentence denotes 8 Massachusetts 20s M Wuhan 2/01/2020
T45 5728-5767 Sentence denotes 9 California 50s F Wuhan 2/02/2020
T46 5768-5808 Sentence denotes 10 California 50s M Wuhan 2/02/2020
T47 5809-5864 Sentence denotes 11 California 50s F Household California 2/02/2020
T48 5865-5879 Sentence denotes Abbreviations:
T49 5880-5901 Sentence denotes F = female; M = male.
T50 5903-5925 Sentence denotes Public Health Response
T51 5926-6003 Sentence denotes CDC established a 2019-nCoV Incident Management Structure on January 7, 2020.
T52 6004-6148 Sentence denotes On January 21, CDC activated its Emergency Operations Center to optimize coordination for domestic and international 2019-nCoV response efforts.
T53 6149-6458 Sentence denotes To date, CDC has deployed teams to the U.S. jurisdictions with cases to assist with epidemiologic investigation and to work closely with state and local partners to identify and monitor close contacts and better understand the spectrum of illness, transmission, and virulence associated with this novel virus.
T54 6459-6539 Sentence denotes Information learned from these investigations will help inform response actions.
T55 6540-6736 Sentence denotes CDC has closely monitored the global impact of this virus with staff members positioned in CDC offices around the world, including mainland China, and in coordination with other countries and WHO.
T56 6737-6879 Sentence denotes This coordination has included deploying CDC staff members to work with WHO and providing active support to CDC offices in affected countries.
T57 6880-7073 Sentence denotes In addition, CDC in response to the escalating risks of travel from China has issued a series of Travelers’ Health Notices for both Wuhan and the rest of China regarding the 2019-nCoV outbreak.
T58 7074-7191 Sentence denotes On January 27, CDC issued a Level 3 travel notice for travelers to avoid all nonessential travel to mainland China.**
T59 7192-7375 Sentence denotes U.S. quarantine stations, located at 18 major U.S. ports of entry, are part of a comprehensive regulatory system authorized under section 361 of the Public Health Service Act (42 U.S.
T60 7376-7494 Sentence denotes Code Section 264), that limits the introduction of infectious diseases into the United States to prevent their spread.
T61 7495-7744 Sentence denotes On January 17, consistent with existing communicable disease response protocols, CDC Quarantine staff members instituted enhanced entry screening of travelers on direct and connecting flights from Wuhan, China, arriving at three major U.S. airports:
T62 7745-7897 Sentence denotes Los Angeles (LAX), New York City (JFK), and San Francisco (SFO),†† which then expanded to include travelers arriving in Atlanta (ATL) and Chicago (ORD).
T63 7898-8014 Sentence denotes These five airports together receive approximately 85% of all air travelers from Wuhan, China, to the United States.
T64 8015-8019 Sentence denotes U.S.
T65 8020-8576 Sentence denotes Customs and Border Protection officers identified travelers arriving from Wuhan and referred them to CDC for health screening.§§ Any traveler from Wuhan with signs or symptoms of illness (e.g., fever, cough, or difficulty breathing) received a more comprehensive public health assessment performed by CDC public health and medical officers.¶¶ All travelers from Wuhan were also provided CDC’s Travel Health Alert Notice (T-HAN)*** that advised them to monitor their health for 14 days and described recommended actions to take if relevant symptoms develop.
T66 8577-8822 Sentence denotes As of February 1, 2020, a total of 3,099 persons on 437 flights were screened; five symptomatic travelers were referred by CDC to local health care providers for further medical evaluation, and one of these persons tested positive for 2019-nCoV.
T67 8823-9064 Sentence denotes On January 24, 2020, travel bans began to be instituted by the Chinese government, resulting in restricted travel in and out of Hubei Province, including the city of Wuhan, and fewer travelers undergoing entry screening in the United States.
T68 9065-9423 Sentence denotes In response to the escalating risks associated with travel from mainland China, on January 31, 2020, the Presidential Proclamation further refined the border health strategy to temporarily suspend entry, undergo additional screening, or possible quarantine for individuals that have visited China (excluding Hong Kong, Macau, and Taiwan) in the past 14 days.
T69 9424-9552 Sentence denotes These enhanced entry screening efforts are taking place at 11 airports at which all air travelers from China are being directed.
T70 9554-9587 Sentence denotes Laboratory and Diagnostic Support
T71 9588-9765 Sentence denotes Chinese health officials posted the full 2019-nCoV genome sequence on January 10, 2020, to inform the development of specific diagnostic tests for this emergent coronavirus (1).
T72 9766-9943 Sentence denotes Within a week, CDC developed a Clinical Laboratory Improvement Amendments–approved real-time RT-PCR test that can diagnose 2019-nCoV respiratory samples from clinical specimens.
T73 9944-10071 Sentence denotes On January 24, CDC publicly posted the assay protocol for this test (https://www.cdc.gov/coronavirus/2019-nCoV/lab/index.html).
T74 10072-10240 Sentence denotes On January 4, 2020, the Food and Drug Administration issued an Emergency Use Authorization to enable emergency use of CDC’s 2019-nCoV Real-Time RT-PCR Diagnostic Panel.
T75 10241-10304 Sentence denotes To date, this test has been limited to use at CDC laboratories.
T76 10305-10395 Sentence denotes This authorization allows the use of the test at any CDC-qualified lab across the country.
T77 10396-10662 Sentence denotes CDC is working closely with FDA and public health partners, including the American Public Health Laboratories, to rapidly share these tests domestically and internationally through CDC’s International Reagent Resource (https://www.internationalreagentresource.org/).
T78 10663-10912 Sentence denotes In addition, CDC uploaded the genome of the virus from the first reported cases in the United States to GenBank, the National Institutes of Health genetic sequence database of publicly available DNA sequences (https://www.ncbi.nlm.nih.gov/genbank/).
T79 10913-11050 Sentence denotes CDC also is growing the virus in cell culture, which is necessary for further studies, including for additional genetic characterization.
T80 11051-11180 Sentence denotes Once isolated, the virus will be made available through BEI Resources (https://www.beiresources.org/) to assist research efforts.
T81 11182-11221 Sentence denotes Clinical and Infection Control Guidance
T82 11222-11359 Sentence denotes Additional information about 2019-nCoV is needed to better understand transmission, disease severity, and risk to the general population.
T83 11360-11558 Sentence denotes Although CDC and partners are actively learning about 2019-nCoV, initial CDC guidance is based on guidance for management and prevention of respiratory illnesses including influenza, MERS, and SARS.
T84 11559-11639 Sentence denotes No vaccine or specific treatment for 2019-nCoV infection is currently available.
T85 11640-11707 Sentence denotes At present, medical care for patients with 2019-nCoV is supportive.
T86 11708-12100 Sentence denotes On January 31, CDC published its third Health Advisory with interim guidance for clinicians and public health practitioners.††† In addition, CDC issued a Clinical Action Alert through its Clinician Outreach and Communication Activity network on January 31.§§§ Interim guidance for health care professionals is available at https://www.cdc.gov/coronavirus/2019-nCoV/hcp/clinical-criteria.html.
T87 12101-12300 Sentence denotes Health care providers should identify patients who might have been exposed and who have signs or symptoms related to 2019-nCoV infection, isolate these patients, and inform public health departments.
T88 12301-12427 Sentence denotes This includes obtaining a detailed travel history for patients being evaluated with fever and lower respiratory tract illness.
T89 12428-13196 Sentence denotes Criteria to guide evaluation and testing of PUIs for 2019-nCoV include 1) fever or signs or symptoms of lower respiratory tract illness (e.g., cough or shortness of breath) in any person, including health care workers, who has had close contact¶¶¶ with a patient with laboratory-confirmed 2019-nCoV infection within 14 days of symptom onset; 2) fever and signs or symptoms of lower respiratory tract illness (e.g., cough or shortness of breath) in any person with a history of travel from Hubei Province, China, within 14 days of symptom onset; or 3) fever and signs or symptoms of lower respiratory tract illness (e.g., cough or shortness of breath) requiring hospitalization in any person with a history of travel from mainland China within 14 days of symptom onset.
T90 13197-13310 Sentence denotes Additional nonhospitalized PUIs may be tested based on consultation with state and local public health officials.
T91 13311-13454 Sentence denotes Clinicians should evaluate PUIs for other possible causes of illness (e.g., influenza and respiratory syncytial virus) as clinically indicated.
T92 13455-13527 Sentence denotes CDC currently recommends a cautious approach to the examination of PUIs.
T93 13528-13713 Sentence denotes These patients should be asked to wear a surgical mask as soon as they are identified, and directed to a separate area, if possible, separated by at least 6 ft (2 m) from other persons.
T94 13714-13842 Sentence denotes Patients should be evaluated in a private room with the door closed, ideally an airborne infection isolation room, if available.
T95 13843-14011 Sentence denotes Health care personnel entering the room should use standard precautions, contact precautions, airborne precautions, and eye protection (e.g., goggles or a face shield).
T96 14012-14132 Sentence denotes Clinicians should immediately notify the health care facility’s infection control personnel and local health department.
T97 14133-14261 Sentence denotes The health department will determine whether the patient needs to be considered a PUI for 2019-nCoV and be tested for infection.
T98 14262-14530 Sentence denotes If directed by the health department, to increase the likelihood of detecting 2019-nCoV infection, CDC recommends collecting and testing both upper and lower respiratory tract specimens.**** Additional specimen types (e.g., stool or urine) may be collected and stored.
T99 14531-14645 Sentence denotes Specimens should be collected as soon as possible once a PUI is identified regardless of time since symptom onset.
T100 14646-14902 Sentence denotes For persons who might have 2019-nCoV infection and their close contacts, information and guidance on how to reduce the risk for transmitting and acquiring infection is available at https://www.cdc.gov/coronavirus/2019-ncov/hcp/guidance-prevent-spread.html.
T101 14903-14995 Sentence denotes Close contacts should immediately call their health care providers if they develop symptoms.
T102 14996-15192 Sentence denotes In addition, CDC is working closely with state and local health partners to develop and disseminate information to the public on general prevention of respiratory illness, including the 2019-nCoV.
T103 15193-15318 Sentence denotes This includes everyday preventive actions such as washing your hands, covering your cough, and staying home when you are ill.
T104 15319-15462 Sentence denotes Additional information and resources for this outbreak are available on the CDC website (https://www.cdc.gov/coronavirus/2019-ncov/index.html).
T105 15464-15474 Sentence denotes Discussion
T106 15475-15645 Sentence denotes The 2019-nCoV has impacted multiple countries, caused severe illness, and sustained person-to-person transmission making it a concerning and serious public health threat.
T107 15646-15706 Sentence denotes It is unclear how this virus will impact the U.S. over time.
T108 15707-15860 Sentence denotes For the general population, who are unlikely to be exposed to this virus at the current time, the immediate health risk from 2019-nCoV is considered low.
T109 15861-16036 Sentence denotes CDC, multiple other federal agencies, state and local health departments, and other partners are implementing aggressive measures to slow U.S. transmission of 2019-nCoV (4,5).
T110 16037-16248 Sentence denotes These measures require the identification of cases and contacts in the United States and the effective management of the estimated 14,000 travelers arriving from mainland China to the United States each day (3).
T111 16249-16338 Sentence denotes These measures are being implemented based on the assumption that there will be more U.S.
T112 16339-16562 Sentence denotes 2019-nCoV cases occurring with potential chains of transmission, with the understanding that these measures might not prevent the eventual establishment of ongoing, widespread transmission of the virus in the United States.
T113 16563-16788 Sentence denotes It is important for public health agencies, health care providers, and the public to be aware of this new 2019-nCoV so that coordinated, timely, and effective actions can help prevent additional cases or poor health outcomes.
T114 16789-17051 Sentence denotes The critical role that the U.S. health care system plays in halting or significantly slowing U.S. transmission of 2019-nCoV is already evident: eight of the first 11 U.S. cases were detected by clinicians collaborating with public health to test persons at risk.
T115 17052-17260 Sentence denotes The early recognition of cases in the United States reduces transmission risk and increases understanding of the virus, including its transmission and severity, to inform national and global response actions.
T116 17261-17527 Sentence denotes 2019-nCoV symptoms are similar to those of influenza (e.g., fever, cough, or sore throat), and the outbreak is occurring during a time of year when respiratory illnesses from influenza, respiratory syncytial virus, and other respiratory viruses are highly prevalent.
T117 17528-17707 Sentence denotes To prevent influenza, all persons aged ≥6 months should receive an annual influenza vaccine, and vaccination is still available and effective in helping to prevent influenza (10).
T118 17708-17905 Sentence denotes Reducing the number of persons in the United States with seasonal influenza will reduce possible confusion with 2019-nCoV infection and possible additional risk to patients with seasonal influenza.
T119 17906-17969 Sentence denotes Public health authorities are monitoring the situation closely.
T120 17970-18099 Sentence denotes As more is learned about this novel virus and this outbreak, CDC will rapidly incorporate new knowledge into guidance for action.
T121 18100-18107 Sentence denotes Summary
T122 18109-18148 Sentence denotes What is already known about this topic?
T123 18149-18281 Sentence denotes In December 2019, an outbreak of acute respiratory illness caused by a novel coronavirus (2019-nCoV) was detected in mainland China.
T124 18282-18363 Sentence denotes Cases have been reported in 26 additional locations, including the United States.
T125 18365-18394 Sentence denotes What is added by this report?
T126 18395-18420 Sentence denotes Nine of the first 11 U.S.
T127 18421-18469 Sentence denotes 2019-nCoV patients were exposed in Wuhan, China.
T128 18470-18498 Sentence denotes CDC expects more U.S. cases.
T129 18500-18553 Sentence denotes What are the implications for public health practice?
T130 18554-18863 Sentence denotes CDC, multiple other federal agencies, state and local health departments, and other partners are implementing aggressive measures to substantially slow U.S. transmission of 2019-nCoV, including identification of U.S. cases and contacts and managing travelers arriving from mainland China to the United States.
T131 18864-18998 Sentence denotes Interim guidance is available at https://www.cdc.gov/coronavirus/index.html and will be updated as more information becomes available.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 84-103 Phenotype denotes respiratory illness http://purl.obolibrary.org/obo/HP_0002086
T2 3325-3330 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T3 3332-3337 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T4 3343-3362 Phenotype denotes shortness of breath http://purl.obolibrary.org/obo/HP_0002098
T5 8214-8219 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T6 8221-8226 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T7 8231-8251 Phenotype denotes difficulty breathing http://purl.obolibrary.org/obo/HP_0002098
T8 11500-11521 Phenotype denotes respiratory illnesses http://purl.obolibrary.org/obo/HP_0002086
T9 12385-12390 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T10 12502-12507 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T11 12571-12576 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T12 12580-12599 Phenotype denotes shortness of breath http://purl.obolibrary.org/obo/HP_0002098
T13 12773-12778 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T14 12843-12848 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T15 12852-12871 Phenotype denotes shortness of breath http://purl.obolibrary.org/obo/HP_0002098
T16 12979-12984 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T17 13049-13054 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T18 13058-13077 Phenotype denotes shortness of breath http://purl.obolibrary.org/obo/HP_0002098
T19 15147-15166 Phenotype denotes respiratory illness http://purl.obolibrary.org/obo/HP_0002086
T20 15277-15282 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T21 17321-17326 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T22 17328-17333 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T23 17338-17349 Phenotype denotes sore throat http://purl.obolibrary.org/obo/HP_0033050
T24 17409-17430 Phenotype denotes respiratory illnesses http://purl.obolibrary.org/obo/HP_0002086
T25 18188-18207 Phenotype denotes respiratory illness http://purl.obolibrary.org/obo/HP_0002086

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
17 107-114 Species denotes persons Tax:9606
18 285-302 Species denotes novel coronavirus Tax:2697049
19 304-313 Species denotes 2019-nCoV Tax:2697049
20 861-870 Species denotes 2019-nCoV Tax:2697049
21 994-999 Species denotes Human Tax:9606
22 1079-1088 Species denotes 2019-nCoV Tax:2697049
23 1227-1234 Species denotes Persons Tax:9606
24 1267-1289 Species denotes 2019 Novel Coronavirus Tax:2697049
25 1337-1344 Species denotes persons Tax:9606
26 1602-1611 Species denotes 2019-nCoV Tax:2697049
27 1902-1911 Species denotes 2019-nCoV Tax:2697049
28 84-103 Disease denotes respiratory illness MESH:D012140
29 474-480 Disease denotes deaths MESH:D003643
30 697-702 Disease denotes death MESH:D003643
31 2328-2347 Disease denotes 2019-nCoV infection MESH:C000657245
58 2730-2743 Species denotes coronaviruses Tax:11118
59 2857-2862 Species denotes human Tax:9606
60 2913-2922 Species denotes 2019-nCoV Tax:2697049
61 3103-3110 Species denotes persons Tax:9606
62 3133-3142 Species denotes 2019-nCoV Tax:2697049
63 3157-3170 Species denotes coronaviruses Tax:11118
64 3273-3281 Species denotes patients Tax:9606
65 3424-3442 Species denotes SARS coronaviruses Tax:694009
66 3596-3603 Species denotes persons Tax:9606
67 3770-3787 Species denotes novel coronavirus Tax:2697049
68 3823-3830 Species denotes persons Tax:9606
69 3229-3240 Species denotes respiratory Tax:12814
70 2753-2785 Disease denotes Middle East Respiratory Syndrome MESH:D018352
71 2787-2791 Disease denotes MERS MESH:D018352
72 2797-2830 Disease denotes Severe Acute Respiratory Syndrome MESH:D045169
73 2832-2836 Disease denotes SARS MESH:D045169
74 2939-2947 Disease denotes zoonotic MESH:D015047
75 3182-3186 Disease denotes MERS MESH:D018352
76 3191-3195 Disease denotes SARS MESH:D045169
77 3297-3316 Disease denotes 2019-nCoV infection MESH:C000657245
78 3325-3330 Disease denotes fever MESH:D005334
79 3332-3337 Disease denotes cough MESH:D003371
80 3343-3362 Disease denotes shortness of breath MESH:D004417
81 3415-3419 Disease denotes MERS MESH:D018352
82 3474-3493 Disease denotes 2019-nCoV infection MESH:C000657245
83 3530-3539 Disease denotes infection MESH:D007239
93 4132-4139 Species denotes persons Tax:9606
94 4252-4259 Species denotes patient Tax:9606
95 4391-4399 Species denotes patients Tax:9606
96 4787-4795 Species denotes patients Tax:9606
97 5070-5078 Species denotes patients Tax:9606
98 4065-4084 Disease denotes 2019-nCoV infection MESH:C000657245
99 4415-4434 Disease denotes 2019-nCoV infection MESH:C000657245
100 4924-4947 Disease denotes California and Illinois MESH:D004670
101 5135-5141 Disease denotes deaths MESH:D003643
103 5217-5239 Species denotes 2019 novel coronavirus Tax:2697049
107 5944-5953 Species denotes 2019-nCoV Tax:2697049
108 6121-6130 Species denotes 2019-nCoV Tax:2697049
109 7054-7063 Species denotes 2019-nCoV Tax:2697049
117 7758-7761 Gene denotes LAX Gene:54900
118 8618-8625 Species denotes persons Tax:9606
119 8784-8791 Species denotes persons Tax:9606
120 8812-8821 Species denotes 2019-nCoV Tax:2697049
121 7427-7446 Disease denotes infectious diseases MESH:D003141
122 8214-8219 Disease denotes fever MESH:D005334
123 8221-8226 Disease denotes cough MESH:D003371
130 9629-9638 Species denotes 2019-nCoV Tax:2697049
131 9749-9760 Species denotes coronavirus Tax:11118
132 9889-9898 Species denotes 2019-nCoV Tax:2697049
133 10033-10054 Species denotes coronavirus/2019-nCoV Tax:2697049
134 10196-10205 Species denotes 2019-nCoV Tax:2697049
135 9899-9910 Species denotes respiratory Tax:12814
137 11195-11204 Disease denotes Infection MESH:D007239
146 11251-11260 Species denotes 2019-nCoV Tax:2697049
147 11414-11423 Species denotes 2019-nCoV Tax:2697049
148 11669-11677 Species denotes patients Tax:9606
149 11683-11692 Species denotes 2019-nCoV Tax:2697049
150 11500-11521 Disease denotes respiratory illnesses MESH:D012140
151 11543-11547 Disease denotes MERS MESH:D018352
152 11553-11557 Disease denotes SARS MESH:D045169
153 11596-11615 Disease denotes 2019-nCoV infection MESH:C000657245
177 12051-12072 Species denotes coronavirus/2019-nCoV Tax:2697049
178 12139-12147 Species denotes patients Tax:9606
179 12253-12261 Species denotes patients Tax:9606
180 12355-12363 Species denotes patients Tax:9606
181 12481-12490 Species denotes 2019-nCoV Tax:2697049
182 12683-12690 Species denotes patient Tax:9606
183 13401-13428 Species denotes respiratory syncytial virus Tax:12814
184 12218-12237 Disease denotes 2019-nCoV infection MESH:C000657245
185 12385-12390 Disease denotes fever MESH:D005334
186 12401-12426 Disease denotes respiratory tract illness MESH:D012140
187 12502-12507 Disease denotes fever MESH:D005334
188 12538-12563 Disease denotes respiratory tract illness MESH:D012140
189 12571-12576 Disease denotes cough MESH:D003371
190 12580-12599 Disease denotes shortness of breath MESH:D004417
191 12717-12736 Disease denotes 2019-nCoV infection MESH:C000657245
192 12773-12778 Disease denotes fever MESH:D005334
193 12810-12835 Disease denotes respiratory tract illness MESH:D012140
194 12843-12848 Disease denotes cough MESH:D003371
195 12852-12871 Disease denotes shortness of breath MESH:D004417
196 12979-12984 Disease denotes fever MESH:D005334
197 13016-13041 Disease denotes respiratory tract illness MESH:D012140
198 13049-13054 Disease denotes cough MESH:D003371
199 13058-13077 Disease denotes shortness of breath MESH:D004417
204 13534-13542 Species denotes patients Tax:9606
205 13705-13712 Species denotes persons Tax:9606
206 13714-13722 Species denotes Patients Tax:9606
207 13803-13812 Disease denotes infection MESH:D007239
214 14182-14189 Species denotes patient Tax:9606
215 14223-14232 Species denotes 2019-nCoV Tax:2697049
216 14420-14431 Species denotes respiratory Tax:12814
217 14076-14085 Disease denotes infection MESH:D007239
218 14251-14260 Disease denotes infection MESH:D007239
219 14340-14359 Disease denotes 2019-nCoV infection MESH:C000657245
228 14650-14657 Species denotes persons Tax:9606
229 14847-14868 Species denotes coronavirus/2019-ncov Tax:2697049
230 15182-15191 Species denotes 2019-nCoV Tax:2697049
231 15428-15449 Species denotes coronavirus/2019-ncov Tax:2697049
232 14673-14692 Disease denotes 2019-nCoV infection MESH:C000657245
233 14801-14810 Disease denotes infection MESH:D007239
234 15147-15166 Disease denotes respiratory illness MESH:D012140
235 15277-15282 Disease denotes cough MESH:D003371
240 15479-15488 Species denotes 2019-nCoV Tax:2697049
241 15832-15841 Species denotes 2019-nCoV Tax:2697049
242 16020-16029 Species denotes 2019-nCoV Tax:2697049
243 16339-16348 Species denotes 2019-nCoV Tax:2697049
247 16669-16678 Species denotes 2019-nCoV Tax:2697049
248 16903-16912 Species denotes 2019-nCoV Tax:2697049
249 17035-17042 Species denotes persons Tax:9606
261 17261-17270 Species denotes 2019-nCoV Tax:2697049
262 17447-17474 Species denotes respiratory syncytial virus Tax:12814
263 17554-17561 Species denotes persons Tax:9606
264 17731-17738 Species denotes persons Tax:9606
265 17872-17880 Species denotes patients Tax:9606
266 17486-17497 Species denotes respiratory Tax:12814
267 17321-17326 Disease denotes fever MESH:D005334
268 17328-17333 Disease denotes cough MESH:D003371
269 17338-17349 Disease denotes sore throat MESH:D010608
270 17409-17430 Disease denotes respiratory illnesses MESH:D012140
271 17820-17839 Disease denotes 2019-nCoV infection MESH:C000657245
275 18220-18237 Species denotes novel coronavirus Tax:2697049
276 18239-18248 Species denotes 2019-nCoV Tax:2697049
277 18188-18207 Disease denotes respiratory illness MESH:D012140
280 18421-18430 Species denotes 2019-nCoV Tax:2697049
281 18431-18439 Species denotes patients Tax:9606
284 18727-18736 Species denotes 2019-nCoV Tax:2697049
285 18917-18928 Species denotes coronavirus Tax:11118

2_test

Id Subject Object Predicate Lexical cue
32027631-25254666-70153122 16031-16032 25254666 denotes 4
32027631-23260039-70153123 16033-16034 23260039 denotes 5
32027631-31441906-70153124 17703-17705 31441906 denotes 10