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PMC:7004396 / 11336-15616 JSONTXT

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LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T244 69-78 SP_7 denotes 2019-nCoV
T243 217-225 GO:0007612 denotes learning
T242 232-241 SP_7 denotes 2019-nCoV
T241 318-329 UBERON:0001004 denotes respiratory
T240 361-365 SP_9 denotes MERS
T239 371-375 SP_10 denotes SARS
T238 414-423 SP_7 denotes 2019-nCoV
T237 501-510 SP_7 denotes 2019-nCoV
T236 869-880 NCBITaxon:11118 denotes coronavirus
T235 881-890 SP_7 denotes 2019-nCoV
T234 1036-1045 SP_7 denotes 2019-nCoV
T233 1213-1236 UBERON:0001558 denotes lower respiratory tract
T232 1299-1308 SP_7 denotes 2019-nCoV
T231 1350-1373 UBERON:0001558 denotes lower respiratory tract
T230 1389-1394 UBERON:0002048 denotes cough
T229 1411-1417 UBERON:0002048 denotes breath
T228 1426-1432 NCBITaxon:1 denotes person
T227 1535-1544 SP_7 denotes 2019-nCoV
T226 1622-1645 UBERON:0001558 denotes lower respiratory tract
T225 1661-1666 UBERON:0002048 denotes cough
T224 1683-1689 UBERON:0002048 denotes breath
T223 1698-1704 NCBITaxon:1 denotes person
T222 1828-1851 UBERON:0001558 denotes lower respiratory tract
T221 1867-1872 UBERON:0002048 denotes cough
T220 1930-1936 NCBITaxon:1 denotes person
T219 2219-2230 UBERON:0001004;NCBITaxon:12814 denotes respiratory
T218 2231-2240 NCBITaxon:12814 denotes syncytial
T217 2241-2246 NCBITaxon:10239 denotes virus
T216 2523-2530 NCBITaxon:9606 denotes persons
T215 2781-2784 UBERON:0000970 denotes eye
T214 2816-2820 UBERON:0001456 denotes face
T213 3041-3050 SP_7 denotes 2019-nCoV
T212 3158-3167 SP_7 denotes 2019-nCoV
T211 3232-3255 UBERON:0001558 denotes lower respiratory tract
T210 3304-3309 UBERON:0001988 denotes stool
T209 3313-3318 UBERON:0001088 denotes urine
T208 3468-3475 NCBITaxon:1 denotes persons
T207 3491-3500 SP_7 denotes 2019-nCoV
T206 3665-3676 NCBITaxon:11118 denotes coronavirus
T205 3677-3686 SP_7 denotes 2019-ncov
T204 3965-3976 UBERON:0001004 denotes respiratory
T203 4000-4009 SP_7 denotes 2019-nCoV
T202 4074-4079 UBERON:0002398 denotes hands
T201 4095-4100 UBERON:0002048 denotes cough
T200 4246-4257 NCBITaxon:11118 denotes coronavirus
T199 4258-4267 SP_7 denotes 2019-ncov

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T6 1213-1236 Body_part denotes lower respiratory tract http://purl.org/sig/ont/fma/fma45662
T7 1350-1373 Body_part denotes lower respiratory tract http://purl.org/sig/ont/fma/fma45662
T8 1622-1645 Body_part denotes lower respiratory tract http://purl.org/sig/ont/fma/fma45662
T9 1828-1851 Body_part denotes lower respiratory tract http://purl.org/sig/ont/fma/fma45662
T10 2781-2784 Body_part denotes eye http://purl.org/sig/ont/fma/fma54448
T11 2816-2820 Body_part denotes face http://purl.org/sig/ont/fma/fma24728
T12 3232-3255 Body_part denotes lower respiratory tract http://purl.org/sig/ont/fma/fma45662
T13 3304-3309 Body_part denotes stool http://purl.org/sig/ont/fma/fma64183
T14 3313-3318 Body_part denotes urine http://purl.org/sig/ont/fma/fma12274

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T2 1213-1236 Body_part denotes lower respiratory tract http://purl.obolibrary.org/obo/UBERON_0001558
T3 1219-1236 Body_part denotes respiratory tract http://purl.obolibrary.org/obo/UBERON_0000065
T4 1350-1373 Body_part denotes lower respiratory tract http://purl.obolibrary.org/obo/UBERON_0001558
T5 1356-1373 Body_part denotes respiratory tract http://purl.obolibrary.org/obo/UBERON_0000065
T6 1622-1645 Body_part denotes lower respiratory tract http://purl.obolibrary.org/obo/UBERON_0001558
T7 1628-1645 Body_part denotes respiratory tract http://purl.obolibrary.org/obo/UBERON_0000065
T8 1828-1851 Body_part denotes lower respiratory tract http://purl.obolibrary.org/obo/UBERON_0001558
T9 1834-1851 Body_part denotes respiratory tract http://purl.obolibrary.org/obo/UBERON_0000065
T10 2781-2784 Body_part denotes eye http://purl.obolibrary.org/obo/UBERON_0000970
T11 2816-2820 Body_part denotes face http://purl.obolibrary.org/obo/UBERON_0001456
T12 3232-3255 Body_part denotes lower respiratory tract http://purl.obolibrary.org/obo/UBERON_0001558
T13 3238-3255 Body_part denotes respiratory tract http://purl.obolibrary.org/obo/UBERON_0000065
T14 3304-3309 Body_part denotes stool http://purl.obolibrary.org/obo/UBERON_0001988
T15 3313-3318 Body_part denotes urine http://purl.obolibrary.org/obo/UBERON_0001088
T16 4074-4079 Body_part denotes hands http://purl.obolibrary.org/obo/UBERON_0002398

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T19 13-22 Disease denotes Infection http://purl.obolibrary.org/obo/MONDO_0005550
T20 350-359 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T21 371-375 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T22 414-433 Disease denotes 2019-nCoV infection http://purl.obolibrary.org/obo/MONDO_0100096
T23 424-433 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T24 1036-1055 Disease denotes 2019-nCoV infection http://purl.obolibrary.org/obo/MONDO_0100096
T25 1046-1055 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T26 1535-1554 Disease denotes 2019-nCoV infection http://purl.obolibrary.org/obo/MONDO_0100096
T27 1545-1554 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T28 2205-2214 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T29 2621-2630 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T30 2894-2903 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T31 3069-3078 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T32 3158-3177 Disease denotes 2019-nCoV infection http://purl.obolibrary.org/obo/MONDO_0100096
T33 3168-3177 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T34 3491-3510 Disease denotes 2019-nCoV infection http://purl.obolibrary.org/obo/MONDO_0100096
T35 3501-3510 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T36 3619-3628 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T98 187-190 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T99 208-216 http://purl.obolibrary.org/obo/CLO_0001658 denotes actively
T100 251-254 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T101 541-544 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T102 667-670 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T103 678-679 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T104 751-759 http://purl.obolibrary.org/obo/CLO_0001658 denotes Activity
T105 1143-1144 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T106 1213-1236 http://purl.obolibrary.org/obo/UBERON_0001558 denotes lower respiratory tract
T107 1279-1286 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T108 1350-1373 http://purl.obolibrary.org/obo/UBERON_0001558 denotes lower respiratory tract
T109 1469-1472 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T110 1499-1500 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T111 1622-1645 http://purl.obolibrary.org/obo/UBERON_0001558 denotes lower respiratory tract
T112 1710-1711 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T113 1828-1851 http://purl.obolibrary.org/obo/UBERON_0001558 denotes lower respiratory tract
T114 1942-1943 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T115 2054-2060 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T116 2241-2246 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T117 2273-2276 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T118 2298-2299 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T119 2385-2386 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T120 2449-2450 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T121 2503-2505 http://purl.obolibrary.org/obo/CLO_0003401 denotes ft
T122 2564-2565 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T123 2781-2784 http://www.ebi.ac.uk/efo/EFO_0000827 denotes eye
T124 2814-2815 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T125 2816-2820 http://purl.obolibrary.org/obo/UBERON_0001456 denotes face
T126 3031-3032 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T127 3058-3064 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T128 3179-3182 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T129 3209-3216 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T130 3232-3255 http://purl.obolibrary.org/obo/UBERON_0001558 denotes lower respiratory tract
T131 3404-3405 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T132 3827-3830 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T133 4213-4216 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T4 689-695 Chemical denotes Action http://purl.obolibrary.org/obo/CHEBI_5133

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T6 217-225 http://purl.obolibrary.org/obo/GO_0007612 denotes learning

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T81 0-39 Sentence denotes Clinical and Infection Control Guidance
T82 40-177 Sentence denotes Additional information about 2019-nCoV is needed to better understand transmission, disease severity, and risk to the general population.
T83 178-376 Sentence denotes Although CDC and partners are actively learning about 2019-nCoV, initial CDC guidance is based on guidance for management and prevention of respiratory illnesses including influenza, MERS, and SARS.
T84 377-457 Sentence denotes No vaccine or specific treatment for 2019-nCoV infection is currently available.
T85 458-525 Sentence denotes At present, medical care for patients with 2019-nCoV is supportive.
T86 526-918 Sentence denotes On January 31, CDC published its third Health Advisory with interim guidance for clinicians and public health practitioners.††† In addition, CDC issued a Clinical Action Alert through its Clinician Outreach and Communication Activity network on January 31.§§§ Interim guidance for health care professionals is available at https://www.cdc.gov/coronavirus/2019-nCoV/hcp/clinical-criteria.html.
T87 919-1118 Sentence denotes Health care providers should identify patients who might have been exposed and who have signs or symptoms related to 2019-nCoV infection, isolate these patients, and inform public health departments.
T88 1119-1245 Sentence denotes This includes obtaining a detailed travel history for patients being evaluated with fever and lower respiratory tract illness.
T89 1246-2014 Sentence denotes Criteria to guide evaluation and testing of PUIs for 2019-nCoV include 1) fever or signs or symptoms of lower respiratory tract illness (e.g., cough or shortness of breath) in any person, including health care workers, who has had close contact¶¶¶ with a patient with laboratory-confirmed 2019-nCoV infection within 14 days of symptom onset; 2) fever and signs or symptoms of lower respiratory tract illness (e.g., cough or shortness of breath) in any person with a history of travel from Hubei Province, China, within 14 days of symptom onset; or 3) fever and signs or symptoms of lower respiratory tract illness (e.g., cough or shortness of breath) requiring hospitalization in any person with a history of travel from mainland China within 14 days of symptom onset.
T90 2015-2128 Sentence denotes Additional nonhospitalized PUIs may be tested based on consultation with state and local public health officials.
T91 2129-2272 Sentence denotes Clinicians should evaluate PUIs for other possible causes of illness (e.g., influenza and respiratory syncytial virus) as clinically indicated.
T92 2273-2345 Sentence denotes CDC currently recommends a cautious approach to the examination of PUIs.
T93 2346-2531 Sentence denotes These patients should be asked to wear a surgical mask as soon as they are identified, and directed to a separate area, if possible, separated by at least 6 ft (2 m) from other persons.
T94 2532-2660 Sentence denotes Patients should be evaluated in a private room with the door closed, ideally an airborne infection isolation room, if available.
T95 2661-2829 Sentence denotes Health care personnel entering the room should use standard precautions, contact precautions, airborne precautions, and eye protection (e.g., goggles or a face shield).
T96 2830-2950 Sentence denotes Clinicians should immediately notify the health care facility’s infection control personnel and local health department.
T97 2951-3079 Sentence denotes The health department will determine whether the patient needs to be considered a PUI for 2019-nCoV and be tested for infection.
T98 3080-3348 Sentence denotes If directed by the health department, to increase the likelihood of detecting 2019-nCoV infection, CDC recommends collecting and testing both upper and lower respiratory tract specimens.**** Additional specimen types (e.g., stool or urine) may be collected and stored.
T99 3349-3463 Sentence denotes Specimens should be collected as soon as possible once a PUI is identified regardless of time since symptom onset.
T100 3464-3720 Sentence denotes For persons who might have 2019-nCoV infection and their close contacts, information and guidance on how to reduce the risk for transmitting and acquiring infection is available at https://www.cdc.gov/coronavirus/2019-ncov/hcp/guidance-prevent-spread.html.
T101 3721-3813 Sentence denotes Close contacts should immediately call their health care providers if they develop symptoms.
T102 3814-4010 Sentence denotes In addition, CDC is working closely with state and local health partners to develop and disseminate information to the public on general prevention of respiratory illness, including the 2019-nCoV.
T103 4011-4136 Sentence denotes This includes everyday preventive actions such as washing your hands, covering your cough, and staying home when you are ill.
T104 4137-4280 Sentence denotes Additional information and resources for this outbreak are available on the CDC website (https://www.cdc.gov/coronavirus/2019-ncov/index.html).

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T8 318-339 Phenotype denotes respiratory illnesses http://purl.obolibrary.org/obo/HP_0002086
T9 1203-1208 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T10 1320-1325 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T11 1389-1394 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T12 1398-1417 Phenotype denotes shortness of breath http://purl.obolibrary.org/obo/HP_0002098
T13 1591-1596 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T14 1661-1666 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T15 1670-1689 Phenotype denotes shortness of breath http://purl.obolibrary.org/obo/HP_0002098
T16 1797-1802 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T17 1867-1872 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T18 1876-1895 Phenotype denotes shortness of breath http://purl.obolibrary.org/obo/HP_0002098
T19 3965-3984 Phenotype denotes respiratory illness http://purl.obolibrary.org/obo/HP_0002086
T20 4095-4100 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
137 13-22 Disease denotes Infection MESH:D007239
146 69-78 Species denotes 2019-nCoV Tax:2697049
147 232-241 Species denotes 2019-nCoV Tax:2697049
148 487-495 Species denotes patients Tax:9606
149 501-510 Species denotes 2019-nCoV Tax:2697049
150 318-339 Disease denotes respiratory illnesses MESH:D012140
151 361-365 Disease denotes MERS MESH:D018352
152 371-375 Disease denotes SARS MESH:D045169
153 414-433 Disease denotes 2019-nCoV infection MESH:C000657245
177 869-890 Species denotes coronavirus/2019-nCoV Tax:2697049
178 957-965 Species denotes patients Tax:9606
179 1071-1079 Species denotes patients Tax:9606
180 1173-1181 Species denotes patients Tax:9606
181 1299-1308 Species denotes 2019-nCoV Tax:2697049
182 1501-1508 Species denotes patient Tax:9606
183 2219-2246 Species denotes respiratory syncytial virus Tax:12814
184 1036-1055 Disease denotes 2019-nCoV infection MESH:C000657245
185 1203-1208 Disease denotes fever MESH:D005334
186 1219-1244 Disease denotes respiratory tract illness MESH:D012140
187 1320-1325 Disease denotes fever MESH:D005334
188 1356-1381 Disease denotes respiratory tract illness MESH:D012140
189 1389-1394 Disease denotes cough MESH:D003371
190 1398-1417 Disease denotes shortness of breath MESH:D004417
191 1535-1554 Disease denotes 2019-nCoV infection MESH:C000657245
192 1591-1596 Disease denotes fever MESH:D005334
193 1628-1653 Disease denotes respiratory tract illness MESH:D012140
194 1661-1666 Disease denotes cough MESH:D003371
195 1670-1689 Disease denotes shortness of breath MESH:D004417
196 1797-1802 Disease denotes fever MESH:D005334
197 1834-1859 Disease denotes respiratory tract illness MESH:D012140
198 1867-1872 Disease denotes cough MESH:D003371
199 1876-1895 Disease denotes shortness of breath MESH:D004417
204 2352-2360 Species denotes patients Tax:9606
205 2523-2530 Species denotes persons Tax:9606
206 2532-2540 Species denotes Patients Tax:9606
207 2621-2630 Disease denotes infection MESH:D007239
214 3000-3007 Species denotes patient Tax:9606
215 3041-3050 Species denotes 2019-nCoV Tax:2697049
216 3238-3249 Species denotes respiratory Tax:12814
217 2894-2903 Disease denotes infection MESH:D007239
218 3069-3078 Disease denotes infection MESH:D007239
219 3158-3177 Disease denotes 2019-nCoV infection MESH:C000657245
228 3468-3475 Species denotes persons Tax:9606
229 3665-3686 Species denotes coronavirus/2019-ncov Tax:2697049
230 4000-4009 Species denotes 2019-nCoV Tax:2697049
231 4246-4267 Species denotes coronavirus/2019-ncov Tax:2697049
232 3491-3510 Disease denotes 2019-nCoV infection MESH:C000657245
233 3619-3628 Disease denotes infection MESH:D007239
234 3965-3984 Disease denotes respiratory illness MESH:D012140
235 4095-4100 Disease denotes cough MESH:D003371