PMC:7003341 / 38472-39783
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T123 | 192-207 | Body_part | denotes | alveolar cavity | http://purl.org/sig/ont/fma/fma57490 |
| T124 | 233-242 | Body_part | denotes | capillary | http://purl.org/sig/ont/fma/fma63194 |
| T125 | 261-269 | Body_part | denotes | alveolar | http://purl.org/sig/ont/fma/fma264783 |
| T126 | 604-611 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T127 | 666-671 | Body_part | denotes | liver | http://purl.org/sig/ont/fma/fma7197 |
| T128 | 692-699 | Body_part | denotes | alanine | http://purl.org/sig/ont/fma/fma82749 |
| T129 | 834-841 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T130 | 863-880 | Body_part | denotes | white blood cells | http://purl.org/sig/ont/fma/fma62852 |
| T131 | 875-880 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T132 | 907-918 | Body_part | denotes | lymphocytes | http://purl.org/sig/ont/fma/fma62863 |
| T133 | 957-972 | Body_part | denotes | red blood cells | http://purl.org/sig/ont/fma/fma62845 |
| T134 | 967-972 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T135 | 1000-1010 | Body_part | denotes | hemoglobin | http://purl.org/sig/ont/fma/fma62293 |
| T136 | 1169-1186 | Body_part | denotes | right middle lobe | http://purl.org/sig/ont/fma/fma7383 |
| T137 | 1219-1235 | Body_part | denotes | right lower lobe | http://purl.org/sig/ont/fma/fma7337 |
| T138 | 1267-1282 | Body_part | denotes | left lower lobe | http://purl.org/sig/ont/fma/fma7371 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T86 | 233-242 | Body_part | denotes | capillary | http://purl.obolibrary.org/obo/UBERON_0001982 |
| T87 | 261-274 | Body_part | denotes | alveolar wall | http://purl.obolibrary.org/obo/UBERON_0004894 |
| T88 | 666-671 | Body_part | denotes | liver | http://purl.obolibrary.org/obo/UBERON_0002107 |
| T89 | 869-874 | Body_part | denotes | blood | http://purl.obolibrary.org/obo/UBERON_0000178 |
| T90 | 961-966 | Body_part | denotes | blood | http://purl.obolibrary.org/obo/UBERON_0000178 |
| T91 | 1182-1186 | Body_part | denotes | lobe | http://purl.obolibrary.org/obo/UBERON_3010752 |
| T92 | 1231-1235 | Body_part | denotes | lobe | http://purl.obolibrary.org/obo/UBERON_3010752 |
| T93 | 1278-1282 | Body_part | denotes | lobe | http://purl.obolibrary.org/obo/UBERON_3010752 |
LitCovid_AGAC
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| p1124s2 | 588-597 | NegReg | denotes | decreased |
| p1124s14 | 625-634 | NegReg | denotes | decreased |
| p1124s15 | 635-642 | Protein | denotes | albumin |
| p1124s30 | 682-691 | PosReg | denotes | increased |
| p1124s40 | 727-736 | PosReg | denotes | increased |
| p1124s51 | 775-784 | PosReg | denotes | increased |
| p1124s52 | 785-798 | MPA | denotes | procalcitonin |
| p1124s62 | 813-822 | PosReg | denotes | increased |
| p1124s63 | 823-841 | MPA | denotes | C-reaction protein |
| p1124s74 | 853-862 | NegReg | denotes | decreased |
| p1124s75 | 863-880 | CPA | denotes | white blood cells |
| p1124s88 | 897-906 | NegReg | denotes | decreased |
| p1124s89 | 907-918 | CPA | denotes | lymphocytes |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T245 | 201-207 | http://purl.obolibrary.org/obo/UBERON_0002553 | denotes | cavity |
| T246 | 428-429 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T247 | 492-493 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T248 | 507-511 | http://purl.obolibrary.org/obo/UBERON_0003101 | denotes | male |
| T249 | 507-511 | http://www.ebi.ac.uk/efo/EFO_0000970 | denotes | male |
| T250 | 565-569 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | test |
| T251 | 666-671 | http://purl.obolibrary.org/obo/UBERON_0002107 | denotes | liver |
| T252 | 666-671 | http://www.ebi.ac.uk/efo/EFO_0000887 | denotes | liver |
| T253 | 869-880 | http://www.ebi.ac.uk/efo/EFO_0000296 | denotes | blood cells |
| T254 | 957-972 | http://purl.obolibrary.org/obo/CL_0000232 | denotes | red blood cells |
| T255 | 1076-1077 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T256 | 1098-1099 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | b |
| T257 | 1188-1197 | http://purl.obolibrary.org/obo/UBERON_0001353 | denotes | posterior |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T37 | 507-511 | Chemical | denotes | male | http://purl.obolibrary.org/obo/CHEBI_30780 |
| T38 | 604-611 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T39 | 692-699 | Chemical | denotes | alanine | http://purl.obolibrary.org/obo/CHEBI_16449 |
| T40 | 737-746 | Chemical | denotes | aspartate | http://purl.obolibrary.org/obo/CHEBI_132943|http://purl.obolibrary.org/obo/CHEBI_29995|http://purl.obolibrary.org/obo/CHEBI_72314 |
| T43 | 834-841 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T44 | 1000-1010 | Chemical | denotes | hemoglobin | http://purl.obolibrary.org/obo/CHEBI_35143 |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T91 | 517-522 | Phenotype | denotes | fever | http://purl.obolibrary.org/obo/HP_0001945 |
| T92 | 571-586 | Phenotype | denotes | hypoproteinemia | http://purl.obolibrary.org/obo/HP_0003075 |
| T93 | 657-680 | Phenotype | denotes | abnormal liver function | http://purl.obolibrary.org/obo/HP_0002910 |
| T94 | 990-1010 | Phenotype | denotes | decreased hemoglobin | http://purl.obolibrary.org/obo/HP_0001903 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T311 | 0-24 | Sentence | denotes | (4) Consolidation stage. |
| T312 | 25-113 | Sentence | denotes | This stage refers to the period around 7–14 days after clinical manifestations appeared. |
| T313 | 114-275 | Sentence | denotes | The main pathological features in this stage are the fibrous exudation of the alveolar cavity and the disappearance of capillary congestion in the alveolar wall. |
| T314 | 276-408 | Sentence | denotes | CT imaging showed the multiple patchy consolidations in slighter density and smaller range than that of the previous stage. (Fig. 9: |
| T315 | 409-449 | Sentence | denotes | 26 cases, 31.2% in a total of 83 cases). |
| T316 | 450-491 | Sentence | denotes | Fig. 9 CT imaging of consolidation stage. |
| T317 | 492-553 | Sentence | denotes | A 65 years old male with fever (maximum temperature of 39 ℃). |
| T318 | 554-1054 | Sentence | denotes | Laboratory test: hypoproteinemia (decreased total protein (62.20 g/L), decreased albumin (35.70 g/L)), abnormal liver function (increased alanine aminotransferase (79 U/L), increased aspartate aminotransferase (72 U/L)), increased procalcitonin (0.10 ng/ml), increased C-reaction protein (53 mg/L), decreased white blood cells (3.72 × 109/L), decreased lymphocytes (0.9 × 109/ L), mildanemia (decreased red blood cells (4.10 × 1012/L), decreased hemoglobin (131.10 g/L), decreased hematocrit (39.0%). |
| T319 | 1055-1311 | Sentence | denotes | Imaging examination: a (thin layer CT) and b (high-resolution CT) showedmultiple patchyand large consolidation in right middle lobe, posterior and basal segment of right lower lobe and outer and basal segment of left lower lobe, with air-bronchogram inside |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 552 | 692-716 | Gene | denotes | alanine aminotransferase | Gene:2875 |
| 553 | 737-763 | Gene | denotes | aspartate aminotransferase | Gene:26503 |
| 554 | 635-642 | Gene | denotes | albumin | Gene:213 |
| 555 | 517-522 | Disease | denotes | fever | MESH:D005334 |