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PMC:7001239 / 10676-13242 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
161 864-872 Disease denotes infected MESH:D007239
169 1600-1609 Species denotes 2019-nCoV Tax:2697049
170 1775-1780 Species denotes human Tax:9606
171 1960-1965 Species denotes human Tax:9606
172 1969-1974 Species denotes human Tax:9606
173 1995-2004 Species denotes 2019-nCoV Tax:2697049
174 2165-2178 Species denotes coronaviruses Tax:11118
175 1701-1709 Disease denotes zoonotic MESH:D015047

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T95 497-502 http://purl.obolibrary.org/obo/CLO_0009985 denotes focus
T96 651-653 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T97 1291-1293 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T98 1364-1367 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T99 1435-1436 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T100 1765-1771 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animal
T101 1775-1780 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T102 1906-1907 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T103 1960-1965 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T104 1969-1974 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T105 2020-2025 http://purl.obolibrary.org/obo/CLO_0009985 denotes focus
T106 2345-2346 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T107 2457-2458 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T80 0-25 Sentence denotes Strengths and limitations
T81 26-248 Sentence denotes The scarcity of available data, especially on case counts by date of disease onset as well as contact tracing, greatly limits the precision of our estimates and does not yet allow for reliable forecasts of epidemic spread.
T82 249-412 Sentence denotes Case counts provided by local authorities in the early stage of an emerging epidemic are notoriously unreliable as reporting rates are unstable and vary with time.
T83 413-561 Sentence denotes This is due to many factors such as the initial lack of proper diagnosis tools, the focus on the more severe cases or the overcrowding of hospitals.
T84 562-768 Sentence denotes We avoided this surveillance bias by relying on an indirect estimate of epidemic size on 18 January, based on cases identified in foreign countries before quarantine measures were implemented on 23 January.
T85 769-952 Sentence denotes This estimated range of epidemic size relies itself on several assumptions, including that all infected individuals who travelled from Wuhan to other countries have been detected [6].
T86 953-1088 Sentence denotes This caveat may lead to an underestimation of transmissibility, especially considering the recent reports about asymptomatic cases [4].
T87 1089-1302 Sentence denotes Conversely, our results do not depend on any assumption about the existence of asymptomatic transmission, and only reflect the possible combinations of transmission events that lead to the situation on 18 January.
T88 1303-1392 Sentence denotes Our analysis, while limited because of the scarcity of data, has two important strengths.
T89 1393-1839 Sentence denotes Firstly, it is based on the simulation of a wide range of possibilities regarding epidemic parameters and allows for the full propagation on the final estimates of the many remaining uncertainties regarding 2019-nCoV and the situation in Wuhan: on the actual size of the epidemic, on the size of the initial zoonotic event at the wet market, on the date(s) of the initial animal-to-human transmission event(s) and on the generation time interval.
T90 1840-2005 Sentence denotes As it accounts for all these uncertainties, our analysis provides a summary of the current state of knowledge about the human-to-human transmissibility of 2019-nCoV.
T91 2006-2185 Sentence denotes Secondly, its focus on the possibility of superspreading events by using negative-binomial offspring distributions appears relevant in the context of emerging coronaviruses [7,8].
T92 2186-2385 Sentence denotes While our estimate of k remains imprecise, the simulations suggest that very low values of k < 0.1 are less likely than higher values < 0.1 that correspond to a more homogeneous transmission pattern.
T93 2386-2566 Sentence denotes However, values of k in the range of 0.1–0.2 are still compatible with a small risk of occurrence of large superspreading events, especially impactful in hospital settings [15,16].

2_test

Id Subject Object Predicate Lexical cue
32019669-31986261-29338358 1085-1086 31986261 denotes 4
32019669-16292310-29338359 2180-2181 16292310 denotes 7
32019669-25932579-29338360 2182-2183 25932579 denotes 8
32019669-26539018-29338361 2559-2561 26539018 denotes 15
32019669-23782161-29338362 2562-2564 23782161 denotes 16

MyTest

Id Subject Object Predicate Lexical cue
32019669-31986261-29338358 1085-1086 31986261 denotes 4
32019669-16292310-29338359 2180-2181 16292310 denotes 7
32019669-25932579-29338360 2182-2183 25932579 denotes 8
32019669-26539018-29338361 2559-2561 26539018 denotes 15
32019669-23782161-29338362 2562-2564 23782161 denotes 16