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PMC:6995816 / 75-5166 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
7 271-278 Species denotes patient Tax:9606
8 482-489 Species denotes patient Tax:9606
9 705-714 Species denotes 2019-nCoV Tax:2697049
10 821-828 Species denotes patient Tax:9606
11 676-703 Disease denotes novel coronavirus infection MESH:C000657245
13 1395-1403 Species denotes patients Tax:9606
17 1511-1519 Species denotes MERS-CoV Tax:1335626
18 1737-1743 Species denotes people Tax:9606
19 1602-1620 Disease denotes infectious disease MESH:D003141
35 2081-2092 Species denotes coronavirus Tax:11118
36 2104-2112 Species denotes SARS-CoV Tax:694009
37 2199-2208 Species denotes 2019-nCoV Tax:2697049
38 2293-2306 Species denotes Coronaviridae Tax:11118
39 2313-2326 Species denotes coronaviruses Tax:11118
40 2466-2474 Species denotes SARS-CoV Tax:694009
41 2478-2486 Species denotes MERS-CoV Tax:1335626
42 2553-2564 Species denotes coronavirus Tax:11118
43 2654-2659 Species denotes human Tax:9606
44 2736-2741 Species denotes human Tax:9606
45 2900-2909 Species denotes 2019-nCoV Tax:2697049
46 1970-1979 Disease denotes pneumonia MESH:D011014
47 2343-2371 Disease denotes upper respiratory infections MESH:D012141
48 2404-2423 Disease denotes respiratory disease MESH:D012140
49 3115-3119 Disease denotes died MESH:D003643
53 3186-3194 Species denotes MERS-CoV Tax:1335626
54 3377-3384 Species denotes honesty Tax:153659
55 3577-3585 Species denotes MERS-CoV Tax:1335626
57 3697-3701 Species denotes nCoV Tax:2697049
63 3912-3920 Species denotes MERS-CoV Tax:1335626
64 3989-3995 Species denotes people Tax:9606
65 3745-3749 Disease denotes SARS MESH:D045169
66 3980-3988 Disease denotes infected MESH:D007239
67 4141-4151 Disease denotes infections MESH:D007239
70 4166-4174 Species denotes MERS-CoV Tax:1335626
71 4268-4276 Species denotes Patients Tax:9606
74 4942-4951 Species denotes 2019-nCoV Tax:2697049
75 5039-5045 Species denotes people Tax:9606

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T86 142-153 UBERON:0001004;NCBITaxon:11886 denotes respiratory
T85 154-161 NCBITaxon:10239 denotes viruses
T84 682-693 NCBITaxon:11118 denotes coronavirus
T83 705-714 SP_7 denotes 2019-nCoV
T82 1338-1342 UBERON:0002398 denotes hand
T81 1511-1519 SP_9 denotes MERS-CoV
T80 1737-1743 NCBITaxon:9606 denotes people
T79 2070-2077 NCBITaxon:species denotes species
T78 2081-2092 NCBITaxon:11118 denotes coronavirus
T77 2104-2112 SP_10 denotes SARS-CoV
T76 2145-2150 NCBITaxon:10239 denotes virus
T75 2199-2208 SP_7 denotes 2019-nCoV
T74 2217-2222 NCBITaxon:10239 denotes virus
T73 2243-2258 SO:0001199 denotes single stranded
T72 2259-2262 BV_22 denotes RNA
T71 2263-2268 BV_22;NCBITaxon:10239 denotes virus
T70 2293-2306 NCBITaxon:11118 denotes Coronaviridae
T69 2313-2326 NCBITaxon:11118 denotes coronaviruses
T68 2349-2360 UBERON:0001004 denotes respiratory
T67 2404-2415 UBERON:0001004 denotes respiratory
T66 2466-2474 SP_10 denotes SARS-CoV
T65 2478-2486 SP_9 denotes MERS-CoV
T64 2553-2564 NCBITaxon:11118 denotes coronavirus
T63 2630-2637 NCBITaxon:species denotes species
T62 2654-2659 SP_6;NCBITaxon:9606 denotes human
T61 2670-2677 NCBITaxon:33208 denotes animals
T60 2736-2741 SP_6;NCBITaxon:9606 denotes human
T59 2746-2753 NCBITaxon:33208 denotes animals
T58 2847-2854 NCBITaxon:species denotes species
T57 2881-2887 NCBITaxon:33208 denotes animal
T56 2900-2909 SP_7 denotes 2019-nCoV
T55 3115-3119 GO:0016265 denotes died
T54 3186-3194 SP_9 denotes MERS-CoV
T53 3217-3225 GO:0007612 denotes learning
T52 3577-3585 SP_9 denotes MERS-CoV
T51 3745-3749 SP_10 denotes SARS
T50 3912-3920 SP_9 denotes MERS-CoV
T49 3989-3995 NCBITaxon:9606 denotes people
T48 4166-4174 SP_9 denotes MERS-CoV
T47 4221-4231 GO:0010467 denotes expression
T46 4277-4280 GO:0016265 denotes die
T45 4292-4295 GO:0016265 denotes die
T44 4342-4350 GO:0007613 denotes memories
T43 4633-4644 GO:0065007 denotes controlling
T42 4914-4918 CHEBI:32588;CHEBI:32588 denotes KCDC
T41 4942-4951 SP_7 denotes 2019-nCoV
T40 5039-5045 NCBITaxon:9606 denotes people

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 1338-1342 Body_part denotes hand http://purl.org/sig/ont/fma/fma9712
T2 2259-2262 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 1338-1342 Body_part denotes hand http://purl.obolibrary.org/obo/UBERON_0002398

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 694-703 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T2 1602-1620 Disease denotes infectious disease http://purl.obolibrary.org/obo/MONDO_0005550
T3 1892-1898 Disease denotes plague http://purl.obolibrary.org/obo/MONDO_0019095
T4 1970-1979 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T5 2104-2112 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T6 2343-2371 Disease denotes upper respiratory infections http://purl.obolibrary.org/obo/MONDO_0024355
T7 2404-2423 Disease denotes respiratory disease http://purl.obolibrary.org/obo/MONDO_0005087
T8 2466-2474 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T9 3745-3749 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T10 4141-4151 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T2 21-22 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T3 154-161 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T4 191-192 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T5 480-481 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T6 752-753 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T7 1336-1337 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T8 1482-1483 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T9 1585-1586 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T10 1805-1806 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T11 2064-2065 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T12 2145-2150 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T13 2209-2211 http://purl.obolibrary.org/obo/CLO_0001302 denotes 34
T14 2217-2222 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T15 2226-2227 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T16 2263-2268 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T17 2502-2505 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T18 2654-2659 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T19 2670-2677 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animals
T20 2736-2741 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T21 2746-2753 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animals
T22 2881-2887 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animal
T23 2972-2973 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T24 3030-3031 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T25 3111-3114 http://purl.obolibrary.org/obo/CLO_0054061 denotes 132
T26 3144-3145 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T27 3226-3227 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T28 3279-3280 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T29 3362-3368 http://purl.obolibrary.org/obo/CLO_0001658 denotes active
T30 3865-3866 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T31 3996-3999 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T32 4203-4204 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T33 4535-4541 http://purl.obolibrary.org/obo/CLO_0001658 denotes active
T34 4876-4889 http://purl.obolibrary.org/obo/OBI_0000245 denotes organizations
T35 4975-4976 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 3217-3225 http://purl.obolibrary.org/obo/GO_0007612 denotes learning

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T2 0-51 Sentence denotes Have you ever put on a level-D protective clothing?
T3 52-205 Sentence denotes Various papers and textbooks plainly describe wearing level-D protective clothing against respiratory viruses, but in practice this is not a simple task.
T4 206-248 Sentence denotes It takes at least five minutes to wear it.
T5 249-330 Sentence denotes If you try to see the patient after wearing, it is very difficult to communicate.
T6 331-387 Sentence denotes With the N95 respirator, basic conversation is not easy.
T7 388-438 Sentence denotes Physical examination is also difficult to conduct.
T8 439-551 Sentence denotes For example, can you properly auscultate a patient while wearing such heavy personal protective equipment (PPE)?
T9 552-657 Sentence denotes Moreover, if you are wearing this heavy PPE in the summer, the heat and stuffiness are really unbearable.
T10 658-838 Sentence denotes When suspected of novel coronavirus infection (2019-nCoV), another ordeal is encountered when a telephone call is made with the community health center to discuss patient transfer.
T11 839-933 Sentence denotes At first it is not connected well because telephone call to public health center is congested.
T12 934-997 Sentence denotes Even with the connection, the voice over there is hard to hear.
T13 998-1066 Sentence denotes And because of wearing gloves, the phone keyboard touch is not good.
T14 1067-1185 Sentence denotes Sometimes the decision of the public health center is inconsistent with ours, resulting in disagreements or conflicts.
T15 1186-1283 Sentence denotes Doffing (taking off) the level-D protective clothing is more difficult than donning (putting on).
T16 1284-1351 Sentence denotes Each time you take off one PPE, you will need to do a hand hygiene.
T17 1352-1389 Sentence denotes So doffing takes at least 10 minutes.
T18 1390-1473 Sentence denotes Some patients show an aggressive attitude, making the medical personnel frustrated.
T19 1474-1499 Sentence denotes This is a real situation.
T20 1500-1579 Sentence denotes During the MERS-CoV disaster in 2015, we already experienced to know this fact.
T21 1580-1678 Sentence denotes When a newly emerging infectious disease outbreak occurs, the situation does not proceed normally.
T22 1679-1765 Sentence denotes Standard guidelines are established and enforced, but the people never act rationally.
T23 1766-1827 Sentence denotes This dealing with epidemic is actually a series of hardships.
T24 1828-1869 Sentence denotes Now, let's go over the current situation.
T25 1870-1936 Sentence denotes Eventually, the third plague in the 21st century struck the world.
T26 1937-2113 Sentence denotes In December 2019, an outbreak of pneumonia of unknown origin began in Wuhan, China.12 The causative pathogen was identified as a new species of coronavirus similar to SARS-CoV.
T27 2114-2307 Sentence denotes It was originally called Wuhan virus at the beginning, but is later officially named 2019-nCoV.34 This virus is a positive sense single stranded RNA virus belonging to the family Coronaviridae.
T28 2308-2487 Sentence denotes Most coronaviruses cause only mild upper respiratory infections, but sometimes they cause fatal respiratory disease and outbreaks, as experienced in cases of SARS-CoV or MERS-CoV.
T29 2488-2678 Sentence denotes This disaster has been warned until recently that new mutants of coronavirus can occur anytime.56 The emergence of these mutants is caused by species jumping between human and other animals.
T30 2679-2775 Sentence denotes Therefore, it is likely to occur in an environment where human and animals are in close contact.
T31 2776-2895 Sentence denotes The current outbreak is also suspected of being caused by mutants from species spillover in Wuhan's wild animal market.
T32 2896-3006 Sentence denotes The 2019-nCoV is rapidly spreading throughout China and around the world in a relatively short period of time.
T33 3007-3165 Sentence denotes As of 29 January 2020, a total of 6,140 cases were confirmed in 19 countries, including Korea, of which 132 died (in China only) and had a mortality of 2.1%.7
T34 3166-3258 Sentence denotes As much as the 2015 MERS-CoV outbreak, we are also learning a lot lesson from this disaster.
T35 3259-3369 Sentence denotes Because epidemic is a national disaster, not only medical institutions but also governments have to be active.
T36 3370-3459 Sentence denotes Hence, honesty and transparency are, above all, the virtues that governments should have.
T37 3460-3672 Sentence denotes Our country is excellent at coping with this disaster, thanks to the experiences that we have gained during the 2015 MERS-CoV outbreak.8 Our defense system is at least more thorough and faster than it used to be.
T38 3673-3731 Sentence denotes What do you expect this nCoV outbreak to be in the future?
T39 3732-3826 Sentence denotes Based on the SARS epidemic precedence, the outbreak is expected to last at least three months.
T40 3827-3921 Sentence denotes And this outbreak is expected to have a greater amount of transmission than the 2015 MERS-CoV.
T41 3922-4060 Sentence denotes Recently, the possibility of transmission by asymptomatic infected people has also been raised carefully although its evidence is unclear.
T42 4061-4155 Sentence denotes Therefore, we should also prepare for the spread to communities by asymptomatic infections.910
T43 4156-4388 Sentence denotes After the MERS-CoV outbreak in 2015, there was a self-tormenting expression in the medical profession society: ‘Patients die, hospitals die, and civil servants are praised.’ But the bad memories of the past should never be repeated.
T44 4389-4502 Sentence denotes In fact, at present, cooperation between community health centers and private hospitals is not always harmonious.
T45 4503-4594 Sentence denotes The government needs to be more active, not just to leave everything to the medical staffs.
T46 4595-4713 Sentence denotes After all, the responsibility for the controlling nationwide epidemics lies with health authorities of the government.
T47 4714-4919 Sentence denotes The Korea Center for Disease Control and Prevention (KCDC) must be the control tower of the present disaster in Korea and all other central or local governmental organizations must cooperate with the KCDC.
T48 4920-4998 Sentence denotes Toward the end of the 2019-nCoV outbreak we must go on a march of arduousness.
T49 4999-5091 Sentence denotes Health workers, the government, and the people will need to unite to overcome this disaster.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 1970-1979 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T2 2349-2371 Phenotype denotes respiratory infections http://purl.obolibrary.org/obo/HP_0011947