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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
1 22-31 Species denotes 2019-nCoV Tax:2697049
7 346-353 Species denotes patient Tax:9606
8 557-564 Species denotes patient Tax:9606
9 780-789 Species denotes 2019-nCoV Tax:2697049
10 896-903 Species denotes patient Tax:9606
11 751-778 Disease denotes novel coronavirus infection MESH:C000657245
13 1470-1478 Species denotes patients Tax:9606
17 1586-1594 Species denotes MERS-CoV Tax:1335626
18 1812-1818 Species denotes people Tax:9606
19 1677-1695 Disease denotes infectious disease MESH:D003141
35 2156-2167 Species denotes coronavirus Tax:11118
36 2179-2187 Species denotes SARS-CoV Tax:694009
37 2274-2283 Species denotes 2019-nCoV Tax:2697049
38 2368-2381 Species denotes Coronaviridae Tax:11118
39 2388-2401 Species denotes coronaviruses Tax:11118
40 2541-2549 Species denotes SARS-CoV Tax:694009
41 2553-2561 Species denotes MERS-CoV Tax:1335626
42 2628-2639 Species denotes coronavirus Tax:11118
43 2729-2734 Species denotes human Tax:9606
44 2811-2816 Species denotes human Tax:9606
45 2975-2984 Species denotes 2019-nCoV Tax:2697049
46 2045-2054 Disease denotes pneumonia MESH:D011014
47 2418-2446 Disease denotes upper respiratory infections MESH:D012141
48 2479-2498 Disease denotes respiratory disease MESH:D012140
49 3190-3194 Disease denotes died MESH:D003643
53 3261-3269 Species denotes MERS-CoV Tax:1335626
54 3452-3459 Species denotes honesty Tax:153659
55 3652-3660 Species denotes MERS-CoV Tax:1335626
57 3772-3776 Species denotes nCoV Tax:2697049
63 3987-3995 Species denotes MERS-CoV Tax:1335626
64 4064-4070 Species denotes people Tax:9606
65 3820-3824 Disease denotes SARS MESH:D045169
66 4055-4063 Disease denotes infected MESH:D007239
67 4216-4226 Disease denotes infections MESH:D007239
70 4241-4249 Species denotes MERS-CoV Tax:1335626
71 4343-4351 Species denotes Patients Tax:9606
74 5017-5026 Species denotes 2019-nCoV Tax:2697049
75 5114-5120 Species denotes people Tax:9606

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T86 217-228 UBERON:0001004;NCBITaxon:11886 denotes respiratory
T85 229-236 NCBITaxon:10239 denotes viruses
T84 757-768 NCBITaxon:11118 denotes coronavirus
T83 780-789 SP_7 denotes 2019-nCoV
T82 1413-1417 UBERON:0002398 denotes hand
T81 1586-1594 SP_9 denotes MERS-CoV
T80 1812-1818 NCBITaxon:9606 denotes people
T79 2145-2152 NCBITaxon:species denotes species
T78 2156-2167 NCBITaxon:11118 denotes coronavirus
T77 2179-2187 SP_10 denotes SARS-CoV
T76 2220-2225 NCBITaxon:10239 denotes virus
T75 2274-2283 SP_7 denotes 2019-nCoV
T74 2292-2297 NCBITaxon:10239 denotes virus
T73 2318-2333 SO:0001199 denotes single stranded
T72 2334-2337 BV_22 denotes RNA
T71 2338-2343 BV_22;NCBITaxon:10239 denotes virus
T70 2368-2381 NCBITaxon:11118 denotes Coronaviridae
T69 2388-2401 NCBITaxon:11118 denotes coronaviruses
T68 2424-2435 UBERON:0001004 denotes respiratory
T67 2479-2490 UBERON:0001004 denotes respiratory
T66 2541-2549 SP_10 denotes SARS-CoV
T65 2553-2561 SP_9 denotes MERS-CoV
T64 2628-2639 NCBITaxon:11118 denotes coronavirus
T63 2705-2712 NCBITaxon:species denotes species
T2 22-31 SP_7 denotes 2019-nCoV
T62 2729-2734 SP_6;NCBITaxon:9606 denotes human
T61 2745-2752 NCBITaxon:33208 denotes animals
T60 2811-2816 SP_6;NCBITaxon:9606 denotes human
T59 2821-2828 NCBITaxon:33208 denotes animals
T58 2922-2929 NCBITaxon:species denotes species
T57 2956-2962 NCBITaxon:33208 denotes animal
T56 2975-2984 SP_7 denotes 2019-nCoV
T55 3190-3194 GO:0016265 denotes died
T54 3261-3269 SP_9 denotes MERS-CoV
T53 3292-3300 GO:0007612 denotes learning
T52 3652-3660 SP_9 denotes MERS-CoV
T51 3820-3824 SP_10 denotes SARS
T50 3987-3995 SP_9 denotes MERS-CoV
T49 4064-4070 NCBITaxon:9606 denotes people
T48 4241-4249 SP_9 denotes MERS-CoV
T47 4296-4306 GO:0010467 denotes expression
T46 4352-4355 GO:0016265 denotes die
T45 4367-4370 GO:0016265 denotes die
T44 4417-4425 GO:0007613 denotes memories
T43 4708-4719 GO:0065007 denotes controlling
T42 4989-4993 CHEBI:32588;CHEBI:32588 denotes KCDC
T41 5017-5026 SP_7 denotes 2019-nCoV
T40 5114-5120 NCBITaxon:9606 denotes people

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 1413-1417 Body_part denotes hand http://purl.org/sig/ont/fma/fma9712
T2 2334-2337 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 1413-1417 Body_part denotes hand http://purl.obolibrary.org/obo/UBERON_0002398

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 769-778 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T2 1677-1695 Disease denotes infectious disease http://purl.obolibrary.org/obo/MONDO_0005550
T3 1967-1973 Disease denotes plague http://purl.obolibrary.org/obo/MONDO_0019095
T4 2045-2054 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T5 2179-2187 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T6 2418-2446 Disease denotes upper respiratory infections http://purl.obolibrary.org/obo/MONDO_0024355
T7 2479-2498 Disease denotes respiratory disease http://purl.obolibrary.org/obo/MONDO_0005087
T8 2541-2549 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T9 3820-3824 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T10 4216-4226 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 59-62 http://purl.obolibrary.org/obo/CLO_0051582 denotes Has
T2 96-97 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T3 229-236 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T4 266-267 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T5 555-556 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T6 827-828 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T7 1411-1412 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T8 1557-1558 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T9 1660-1661 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T10 1880-1881 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T11 2139-2140 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T12 2220-2225 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T13 2284-2286 http://purl.obolibrary.org/obo/CLO_0001302 denotes 34
T14 2292-2297 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T15 2301-2302 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T16 2338-2343 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T17 2577-2580 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T18 2729-2734 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T19 2745-2752 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animals
T20 2811-2816 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T21 2821-2828 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animals
T22 2956-2962 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animal
T23 3047-3048 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T24 3105-3106 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T25 3186-3189 http://purl.obolibrary.org/obo/CLO_0054061 denotes 132
T26 3219-3220 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T27 3301-3302 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T28 3354-3355 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T29 3437-3443 http://purl.obolibrary.org/obo/CLO_0001658 denotes active
T30 3940-3941 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T31 4071-4074 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T32 4278-4279 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T33 4610-4616 http://purl.obolibrary.org/obo/CLO_0001658 denotes active
T34 4951-4964 http://purl.obolibrary.org/obo/OBI_0000245 denotes organizations
T35 5050-5051 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T36 5191-5194 http://purl.obolibrary.org/obo/CLO_0051582 denotes has

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 3292-3300 http://purl.obolibrary.org/obo/GO_0007612 denotes learning

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T1 0-73 Sentence denotes The Fight against the 2019-nCoV Outbreak: an Arduous March Has Just Begun
T2 75-126 Sentence denotes Have you ever put on a level-D protective clothing?
T3 127-280 Sentence denotes Various papers and textbooks plainly describe wearing level-D protective clothing against respiratory viruses, but in practice this is not a simple task.
T4 281-323 Sentence denotes It takes at least five minutes to wear it.
T5 324-405 Sentence denotes If you try to see the patient after wearing, it is very difficult to communicate.
T6 406-462 Sentence denotes With the N95 respirator, basic conversation is not easy.
T7 463-513 Sentence denotes Physical examination is also difficult to conduct.
T8 514-626 Sentence denotes For example, can you properly auscultate a patient while wearing such heavy personal protective equipment (PPE)?
T9 627-732 Sentence denotes Moreover, if you are wearing this heavy PPE in the summer, the heat and stuffiness are really unbearable.
T10 733-913 Sentence denotes When suspected of novel coronavirus infection (2019-nCoV), another ordeal is encountered when a telephone call is made with the community health center to discuss patient transfer.
T11 914-1008 Sentence denotes At first it is not connected well because telephone call to public health center is congested.
T12 1009-1072 Sentence denotes Even with the connection, the voice over there is hard to hear.
T13 1073-1141 Sentence denotes And because of wearing gloves, the phone keyboard touch is not good.
T14 1142-1260 Sentence denotes Sometimes the decision of the public health center is inconsistent with ours, resulting in disagreements or conflicts.
T15 1261-1358 Sentence denotes Doffing (taking off) the level-D protective clothing is more difficult than donning (putting on).
T16 1359-1426 Sentence denotes Each time you take off one PPE, you will need to do a hand hygiene.
T17 1427-1464 Sentence denotes So doffing takes at least 10 minutes.
T18 1465-1548 Sentence denotes Some patients show an aggressive attitude, making the medical personnel frustrated.
T19 1549-1574 Sentence denotes This is a real situation.
T20 1575-1654 Sentence denotes During the MERS-CoV disaster in 2015, we already experienced to know this fact.
T21 1655-1753 Sentence denotes When a newly emerging infectious disease outbreak occurs, the situation does not proceed normally.
T22 1754-1840 Sentence denotes Standard guidelines are established and enforced, but the people never act rationally.
T23 1841-1902 Sentence denotes This dealing with epidemic is actually a series of hardships.
T24 1903-1944 Sentence denotes Now, let's go over the current situation.
T25 1945-2011 Sentence denotes Eventually, the third plague in the 21st century struck the world.
T26 2012-2188 Sentence denotes In December 2019, an outbreak of pneumonia of unknown origin began in Wuhan, China.12 The causative pathogen was identified as a new species of coronavirus similar to SARS-CoV.
T27 2189-2382 Sentence denotes It was originally called Wuhan virus at the beginning, but is later officially named 2019-nCoV.34 This virus is a positive sense single stranded RNA virus belonging to the family Coronaviridae.
T28 2383-2562 Sentence denotes Most coronaviruses cause only mild upper respiratory infections, but sometimes they cause fatal respiratory disease and outbreaks, as experienced in cases of SARS-CoV or MERS-CoV.
T29 2563-2753 Sentence denotes This disaster has been warned until recently that new mutants of coronavirus can occur anytime.56 The emergence of these mutants is caused by species jumping between human and other animals.
T30 2754-2850 Sentence denotes Therefore, it is likely to occur in an environment where human and animals are in close contact.
T31 2851-2970 Sentence denotes The current outbreak is also suspected of being caused by mutants from species spillover in Wuhan's wild animal market.
T32 2971-3081 Sentence denotes The 2019-nCoV is rapidly spreading throughout China and around the world in a relatively short period of time.
T33 3082-3240 Sentence denotes As of 29 January 2020, a total of 6,140 cases were confirmed in 19 countries, including Korea, of which 132 died (in China only) and had a mortality of 2.1%.7
T34 3241-3333 Sentence denotes As much as the 2015 MERS-CoV outbreak, we are also learning a lot lesson from this disaster.
T35 3334-3444 Sentence denotes Because epidemic is a national disaster, not only medical institutions but also governments have to be active.
T36 3445-3534 Sentence denotes Hence, honesty and transparency are, above all, the virtues that governments should have.
T37 3535-3747 Sentence denotes Our country is excellent at coping with this disaster, thanks to the experiences that we have gained during the 2015 MERS-CoV outbreak.8 Our defense system is at least more thorough and faster than it used to be.
T38 3748-3806 Sentence denotes What do you expect this nCoV outbreak to be in the future?
T39 3807-3901 Sentence denotes Based on the SARS epidemic precedence, the outbreak is expected to last at least three months.
T40 3902-3996 Sentence denotes And this outbreak is expected to have a greater amount of transmission than the 2015 MERS-CoV.
T41 3997-4135 Sentence denotes Recently, the possibility of transmission by asymptomatic infected people has also been raised carefully although its evidence is unclear.
T42 4136-4230 Sentence denotes Therefore, we should also prepare for the spread to communities by asymptomatic infections.910
T43 4231-4463 Sentence denotes After the MERS-CoV outbreak in 2015, there was a self-tormenting expression in the medical profession society: ‘Patients die, hospitals die, and civil servants are praised.’ But the bad memories of the past should never be repeated.
T44 4464-4577 Sentence denotes In fact, at present, cooperation between community health centers and private hospitals is not always harmonious.
T45 4578-4669 Sentence denotes The government needs to be more active, not just to leave everything to the medical staffs.
T46 4670-4788 Sentence denotes After all, the responsibility for the controlling nationwide epidemics lies with health authorities of the government.
T47 4789-4994 Sentence denotes The Korea Center for Disease Control and Prevention (KCDC) must be the control tower of the present disaster in Korea and all other central or local governmental organizations must cooperate with the KCDC.
T48 4995-5073 Sentence denotes Toward the end of the 2019-nCoV outbreak we must go on a march of arduousness.
T49 5074-5166 Sentence denotes Health workers, the government, and the people will need to unite to overcome this disaster.
T50 5168-5179 Sentence denotes Disclosure:
T51 5180-5242 Sentence denotes The author has no potential conflicts of interest to disclose.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 2045-2054 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T2 2424-2446 Phenotype denotes respiratory infections http://purl.obolibrary.org/obo/HP_0011947